Wall clock time and date at job start Mon Mar 30 2020 00:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46836 * 2 1 4 4 C 1.53000 * 109.46946 * 174.71915 * 3 2 1 5 5 H 1.09005 * 109.47163 * 304.12081 * 4 3 2 6 6 C 1.50704 * 109.47202 * 184.12393 * 4 3 2 7 7 O 1.20830 * 119.99879 * 0.02562 * 6 4 3 8 8 O 1.34218 * 120.00248 * 180.02562 * 6 4 3 9 9 C 1.45196 * 117.00385 * 179.97438 * 8 6 4 10 10 H 1.09008 * 109.47026 * 30.00307 * 9 8 6 11 11 C 1.50707 * 109.47353 * 149.99789 * 9 8 6 12 12 H 1.07997 * 119.99708 * 0.02562 * 11 9 8 13 13 C 1.37873 * 119.99972 * 180.02562 * 11 9 8 14 14 N 1.31523 * 120.00292 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 120.00141 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47189 * 90.00173 * 15 13 11 17 17 H 1.48496 * 109.47306 * 210.00186 * 15 13 11 18 18 H 1.48503 * 109.46715 * 330.00195 * 15 13 11 19 19 C 1.53000 * 109.47579 * 270.00091 * 9 8 6 20 20 C 1.52999 * 117.50072 * 128.74008 * 19 9 8 21 21 C 1.53004 * 117.49682 * 60.08316 * 19 9 8 22 22 C 1.52998 * 109.47089 * 64.12499 * 4 3 2 23 23 C 1.52996 * 109.47114 * 65.10935 * 22 4 3 24 24 C 1.53001 * 109.47105 * 185.10765 * 22 4 3 25 25 H 1.09001 * 109.47482 * 299.99928 * 1 2 3 26 26 H 1.08999 * 109.46867 * 60.00072 * 1 2 3 27 27 H 1.08998 * 109.46915 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47267 * 240.00280 * 2 1 3 29 29 H 1.08997 * 109.47275 * 119.99610 * 2 1 3 30 30 H 1.09002 * 109.47264 * 54.72155 * 3 2 1 31 31 H 1.09001 * 109.47244 * 294.71862 * 3 2 1 32 32 H 0.96995 * 119.99818 * 179.97438 * 14 13 11 33 33 H 1.08996 * 115.54830 * 274.41461 * 19 9 8 34 34 H 1.09004 * 117.49868 * 0.02562 * 20 19 9 35 35 H 1.09001 * 117.50185 * 145.02004 * 20 19 9 36 36 H 1.08995 * 117.49985 * 214.97906 * 21 19 9 37 37 H 1.09006 * 117.49360 * 359.97438 * 21 19 9 38 38 H 1.08995 * 109.46856 * 305.10488 * 22 4 3 39 39 H 1.09002 * 109.46668 * 180.02562 * 23 22 4 40 40 H 1.09001 * 109.47233 * 299.99381 * 23 22 4 41 41 H 1.08995 * 109.47624 * 60.00023 * 23 22 4 42 42 H 1.09009 * 109.47158 * 52.90451 * 24 22 4 43 43 H 1.09002 * 109.47078 * 172.90184 * 24 22 4 44 44 H 1.09000 * 109.47340 * 292.90871 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5642 1.4446 0.1328 5 1 3.8516 0.8950 1.0292 6 6 4.0577 2.8649 0.2346 7 8 3.2709 3.7815 0.2046 8 8 5.3711 3.1118 0.3587 9 6 5.7745 4.5036 0.4510 10 1 4.9795 5.0818 0.9221 11 6 7.0300 4.6090 1.2779 12 1 7.4799 3.7190 1.6922 13 6 7.6041 5.8417 1.5054 14 7 7.0558 6.9257 1.0013 15 14 9.1607 5.9724 2.5298 16 1 10.3471 5.8602 1.6439 17 1 9.1858 7.2832 3.2272 18 1 9.1865 4.8775 3.5328 19 6 6.0406 5.0517 -0.9525 20 6 5.3488 6.3591 -1.3433 21 6 4.8803 5.0340 -1.9496 22 6 4.1841 0.7763 -1.0960 23 6 3.8872 1.6181 -2.3386 24 6 5.6980 0.6637 -0.9061 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5137 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 1.6015 1.9830 0.8389 31 1 1.7559 1.9284 -0.9335 32 1 7.4595 7.7929 1.1617 33 1 7.0428 4.8762 -1.3434 34 1 4.7043 6.8291 -0.6004 35 1 5.8957 7.0438 -1.9916 36 1 5.1191 4.8474 -2.9965 37 1 3.9274 4.6315 -1.6057 38 1 3.7586 -0.2193 -1.2214 39 1 4.3285 1.1416 -3.2141 40 1 2.8086 1.6983 -2.4740 41 1 4.3127 2.6137 -2.2132 42 1 5.9096 0.1733 0.0442 43 1 6.1238 0.0772 -1.7203 44 1 6.1395 1.6603 -0.9067 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345533743.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:47 Heat of formation + Delta-G solvation = -109.092513 kcal Electronic energy + Delta-G solvation = -22242.086913 eV Core-core repulsion = 19158.767059 eV Total energy + Delta-G solvation = -3083.319854 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.67625 -38.78921 -37.58666 -36.66012 -34.76655 -34.51652 -30.51652 -29.77319 -28.06057 -26.09202 -24.95365 -23.14915 -22.86912 -22.33855 -21.17875 -20.09557 -18.66243 -18.21536 -17.71001 -16.84946 -16.35954 -16.14433 -15.88934 -15.31012 -14.90284 -14.60322 -14.42505 -14.25031 -13.85371 -13.55686 -13.36539 -13.09000 -12.94113 -12.82520 -12.79439 -12.61570 -12.36790 -12.24902 -12.17137 -12.00544 -11.79152 -11.71613 -11.63089 -11.40969 -11.30069 -11.20801 -10.98486 -10.84134 -10.56725 -10.38492 -8.20513 -6.37058 1.41679 1.42637 1.48750 1.53463 2.08944 2.44825 3.06829 3.23288 3.71258 3.80553 3.89974 4.11132 4.17167 4.21733 4.31649 4.35458 4.39990 4.45681 4.61235 4.67675 4.70341 4.80023 4.83499 4.89767 4.92025 5.02527 5.09244 5.11107 5.11868 5.16831 5.25583 5.28606 5.31106 5.39787 5.42962 5.44526 5.50874 5.58071 5.58788 5.72380 5.90877 6.23375 6.67487 7.11878 7.34227 8.85602 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.024443 B = 0.005470 C = 0.005237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.266993 B = 5117.672143 C = 5345.215050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.101 4.101 4 C -0.076 4.076 5 H 0.113 0.887 6 C 0.454 3.546 7 O -0.553 6.553 8 O -0.349 6.349 9 C 0.253 3.747 10 H 0.001 0.999 11 C -0.553 4.553 12 H 0.063 0.937 13 C 0.025 3.975 14 N -0.896 5.896 15 Si 0.971 3.029 16 H -0.270 1.270 17 H -0.280 1.280 18 H -0.268 1.268 19 C -0.125 4.125 20 C -0.128 4.128 21 C -0.194 4.194 22 C -0.075 4.075 23 C -0.161 4.161 24 C -0.157 4.157 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.266 0.734 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.116 0.884 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.034 0.966 42 H 0.058 0.942 43 H 0.069 0.931 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.280 -14.027 -5.210 16.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.138 4.138 4 C -0.095 4.095 5 H 0.131 0.869 6 C 0.299 3.701 7 O -0.445 6.445 8 O -0.265 6.265 9 C 0.199 3.801 10 H 0.018 0.982 11 C -0.590 4.590 12 H 0.081 0.919 13 C -0.177 4.177 14 N -0.532 5.532 15 Si 0.796 3.204 16 H -0.195 1.195 17 H -0.205 1.205 18 H -0.193 1.193 19 C -0.144 4.144 20 C -0.165 4.165 21 C -0.231 4.231 22 C -0.093 4.093 23 C -0.218 4.218 24 C -0.214 4.214 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.118 0.882 37 H 0.106 0.894 38 H 0.134 0.866 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.053 0.947 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.454 -13.520 -5.226 16.299 hybrid contribution 0.799 1.129 0.723 1.561 sum -6.655 -12.391 -4.503 14.768 Atomic orbital electron populations 1.21768 0.95273 1.02289 1.01622 1.21558 0.96291 0.94224 1.03354 1.21509 0.91054 0.98845 1.02413 1.21440 0.97446 0.87956 1.02686 0.86866 1.24431 0.81153 0.93565 0.70927 1.90538 1.57296 1.48625 1.48062 1.86557 1.25316 1.33282 1.81297 1.19754 0.93939 0.74419 0.91949 0.98160 1.21186 1.10169 0.94069 1.33624 0.91920 1.25697 1.00641 0.94716 0.96603 1.70170 1.40477 0.98500 1.44051 0.85360 0.78866 0.77578 0.78644 1.19532 1.20550 1.19270 1.22344 0.94887 1.01877 0.95274 1.22282 1.02551 0.90282 1.01394 1.23249 0.99162 1.02457 0.98217 1.21107 0.96112 1.00201 0.91873 1.22076 1.01926 0.99642 0.98191 1.22014 0.95038 1.02327 1.01987 0.93397 0.92891 0.91195 0.90036 0.91002 0.93063 0.91742 0.92528 0.90512 0.91975 0.89485 0.88168 0.89390 0.86596 0.90661 0.91796 0.94653 0.92307 0.91178 0.93467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.91 71.98 0.71 -1.71 16 2 C -0.12 -2.02 5.54 30.60 0.17 -1.85 16 3 C -0.10 -2.54 3.87 30.60 0.12 -2.42 16 4 C -0.08 -2.20 2.11 -11.54 -0.02 -2.22 16 5 H 0.11 2.95 8.14 -2.38 -0.02 2.93 16 6 C 0.45 18.74 4.95 71.24 0.35 19.10 16 7 O -0.55 -26.18 12.98 21.95 0.29 -25.89 16 8 O -0.35 -16.43 7.12 -51.30 -0.37 -16.79 16 9 C 0.25 13.74 2.25 29.85 0.07 13.81 16 10 H 0.00 0.04 6.91 -2.38 -0.02 0.02 16 11 C -0.55 -31.46 8.88 25.60 0.23 -31.24 16 12 H 0.06 3.52 7.81 -2.91 -0.02 3.50 16 13 C 0.03 1.40 5.30 84.65 0.45 1.85 16 14 N -0.90 -50.94 11.43 21.45 0.25 -50.69 16 15 Si 0.97 43.27 29.54 68.60 2.03 45.30 16 16 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 17 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 18 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 19 C -0.12 -6.25 4.47 -10.79 -0.05 -6.29 16 20 C -0.13 -6.08 9.04 30.62 0.28 -5.80 16 21 C -0.19 -8.33 8.34 30.62 0.26 -8.08 16 22 C -0.07 -1.79 2.55 -10.80 -0.03 -1.82 16 23 C -0.16 -4.14 8.63 71.98 0.62 -3.52 16 24 C -0.16 -4.20 8.60 71.98 0.62 -3.58 16 25 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.08 1.16 6.69 -2.39 -0.02 1.14 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.05 1.47 7.98 -2.39 -0.02 1.46 16 31 H 0.06 1.73 6.38 -2.39 -0.02 1.71 16 32 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 33 H 0.08 3.96 8.11 -2.39 -0.02 3.94 16 34 H 0.06 3.25 8.05 -2.38 -0.02 3.23 16 35 H 0.09 3.83 8.14 -2.39 -0.02 3.81 16 36 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 37 H 0.09 3.96 4.89 -2.38 -0.01 3.95 16 38 H 0.12 1.98 6.42 -2.39 -0.02 1.96 16 39 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.06 1.51 6.48 -2.39 -0.02 1.49 16 41 H 0.03 1.14 4.96 -2.39 -0.01 1.13 16 42 H 0.06 1.49 8.14 -2.38 -0.02 1.48 16 43 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.05 1.66 5.91 -2.39 -0.01 1.64 16 Total: -1.00 -64.77 337.18 6.92 -57.85 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: 0.96 Total: 23.99 kcal Atomic # 6 Polarization: -37.54 SS G_CDS: 3.77 Total: -33.77 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: 0.25 Total: -50.69 kcal Atomic # 8 Polarization: -42.60 SS G_CDS: -0.08 Total: -42.68 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -64.77 6.92 -57.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345533743.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.241 kcal (2) G-P(sol) polarization free energy of solvation -64.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds