Wall clock time and date at job start Mon Mar 30 2020 01:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46788 * 2 1 4 4 C 1.53005 * 109.47228 * 119.99458 * 2 1 3 5 5 C 1.52999 * 109.47264 * 174.99861 * 4 2 1 6 6 H 1.09002 * 109.46716 * 55.00469 * 5 4 2 7 7 C 1.52997 * 109.47317 * 295.00560 * 5 4 2 8 8 C 1.52992 * 109.46961 * 175.00098 * 5 4 2 9 9 C 1.50707 * 109.46966 * 185.00310 * 8 5 4 10 10 O 1.20818 * 119.99756 * 0.02562 * 9 8 5 11 11 O 1.34232 * 119.99708 * 180.02562 * 9 8 5 12 12 C 1.45200 * 116.99602 * 179.97438 * 11 9 8 13 13 H 1.09004 * 109.47185 * 30.00408 * 12 11 9 14 14 C 1.50707 * 109.47187 * 149.99636 * 12 11 9 15 15 H 1.07999 * 119.99539 * 0.02562 * 14 12 11 16 16 C 1.37879 * 120.00005 * 179.97438 * 14 12 11 17 17 N 1.31511 * 119.99898 * 0.02562 * 16 14 12 18 18 Si 1.86795 * 119.99593 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47640 * 60.00099 * 18 16 14 20 20 H 1.48500 * 109.47118 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47105 * 299.99850 * 18 16 14 22 22 C 1.52995 * 109.47383 * 269.99817 * 12 11 9 23 23 C 1.53002 * 117.49817 * 128.74510 * 22 12 11 24 24 C 1.53002 * 117.49609 * 60.08770 * 22 12 11 25 25 H 1.08996 * 109.47233 * 299.99692 * 1 2 3 26 26 H 1.09001 * 109.47288 * 60.00615 * 1 2 3 27 27 H 1.09002 * 109.46686 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47389 * 239.99635 * 2 1 3 29 29 H 1.08996 * 109.46982 * 60.00155 * 3 2 1 30 30 H 1.08997 * 109.46685 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46704 * 299.99742 * 3 2 1 32 32 H 1.09006 * 109.46782 * 54.99894 * 4 2 1 33 33 H 1.08997 * 109.47391 * 295.00889 * 4 2 1 34 34 H 1.09002 * 109.47153 * 299.99641 * 7 5 4 35 35 H 1.09001 * 109.46832 * 179.97438 * 7 5 4 36 36 H 1.09004 * 109.47261 * 59.99813 * 7 5 4 37 37 H 1.08996 * 109.47729 * 305.00119 * 8 5 4 38 38 H 1.09001 * 109.47563 * 65.00698 * 8 5 4 39 39 H 0.96999 * 119.99743 * 179.97438 * 17 16 14 40 40 H 1.08996 * 115.55017 * 274.41899 * 22 12 11 41 41 H 1.08998 * 117.49851 * 0.02562 * 23 22 12 42 42 H 1.09005 * 117.49630 * 145.02220 * 23 22 12 43 43 H 1.09005 * 117.49694 * 214.98185 * 24 22 12 44 44 H 1.08997 * 117.50265 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 3.5649 -0.8310 1.1881 6 1 3.9954 0.1612 1.0528 7 6 3.9650 -1.7251 0.0128 8 6 4.0851 -1.4392 2.4919 9 6 5.5922 -1.4343 2.4823 10 8 6.1887 -0.9895 1.5305 11 8 6.2716 -1.9241 3.5313 12 6 7.7210 -1.8878 3.4529 13 1 8.0308 -1.0372 2.8457 14 6 8.2958 -1.7510 4.8393 15 1 7.6376 -1.6972 5.6938 16 6 9.6620 -1.6956 5.0168 17 7 10.4635 -1.7616 3.9762 18 14 10.3743 -1.5268 6.7353 19 1 9.9519 -2.6854 7.5624 20 1 11.8567 -1.4895 6.6552 21 1 9.8808 -0.2704 7.3545 22 6 8.2299 -3.1821 2.8152 23 6 9.2014 -3.0561 1.6399 24 6 7.7579 -3.5033 1.3957 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6054 -1.7197 1.2953 33 1 1.7516 -0.1583 2.1370 34 1 3.5345 -2.7173 0.1481 35 1 5.0514 -1.8029 -0.0311 36 1 3.5943 -1.2917 -0.9162 37 1 3.7254 -0.8512 3.3362 38 1 3.7258 -2.4642 2.5836 39 1 11.4246 -1.7222 4.1011 40 1 8.3733 -4.0184 3.4993 41 1 9.4782 -2.0511 1.3212 42 1 9.9837 -3.8099 1.5506 43 1 7.5912 -4.5511 1.1458 44 1 7.0845 -2.7929 0.9163 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345547209.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:16 Heat of formation + Delta-G solvation = -98.131686 kcal Electronic energy + Delta-G solvation = -21333.877566 eV Core-core repulsion = 18251.033009 eV Total energy + Delta-G solvation = -3082.844556 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.79044 -37.78251 -36.29471 -34.85177 -33.43053 -32.62153 -28.60866 -27.34418 -27.18975 -26.58901 -23.31046 -21.72983 -21.22800 -20.00873 -19.36509 -19.06719 -17.06485 -16.45801 -15.80154 -15.57779 -15.03027 -14.68011 -14.27282 -14.04746 -13.80054 -13.58325 -13.02893 -12.79115 -12.46447 -12.36072 -12.06739 -11.76286 -11.55299 -11.42836 -11.26789 -11.21006 -11.03536 -10.97128 -10.81253 -10.59441 -10.38888 -10.35950 -10.29404 -10.24623 -9.80731 -9.44953 -9.28788 -8.98490 -8.61839 -8.39965 -6.12808 -4.20632 3.08331 3.28054 3.31856 3.33709 3.71789 4.36302 4.68326 4.79023 4.83079 5.04807 5.10647 5.18392 5.20049 5.40753 5.50051 5.56113 5.57317 5.67927 5.75072 5.82569 5.84919 5.87546 5.90420 5.98327 6.04103 6.05648 6.17145 6.19445 6.22341 6.31680 6.43353 6.53072 6.54748 6.66434 6.76204 7.03187 7.19918 7.32240 7.45987 7.66852 7.90187 8.16979 8.70389 8.94783 9.43989 10.93862 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.029940 B = 0.004139 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.975216 B = 6763.960418 C = 7268.171352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 C -0.151 4.151 4 C -0.110 4.110 5 C -0.080 4.080 6 H 0.082 0.918 7 C -0.155 4.155 8 C -0.114 4.114 9 C 0.453 3.547 10 O -0.518 6.518 11 O -0.355 6.355 12 C 0.249 3.751 13 H 0.048 0.952 14 C -0.529 4.529 15 H 0.067 0.933 16 C 0.069 3.931 17 N -0.873 5.873 18 Si 0.907 3.093 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.275 1.275 22 C -0.114 4.114 23 C -0.124 4.124 24 C -0.229 4.229 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.047 0.953 35 H 0.076 0.924 36 H 0.052 0.948 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.264 0.736 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.235 1.152 -6.481 16.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.208 4.208 4 C -0.147 4.147 5 C -0.099 4.099 6 H 0.100 0.900 7 C -0.212 4.212 8 C -0.152 4.152 9 C 0.296 3.704 10 O -0.409 6.409 11 O -0.271 6.271 12 C 0.196 3.804 13 H 0.065 0.935 14 C -0.567 4.567 15 H 0.086 0.914 16 C -0.135 4.135 17 N -0.509 5.509 18 Si 0.734 3.266 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.133 4.133 23 C -0.161 4.161 24 C -0.266 4.266 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.074 0.926 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.799 1.270 -6.787 16.330 hybrid contribution 0.673 -0.038 0.859 1.092 sum -14.126 1.232 -5.928 15.369 Atomic orbital electron populations 1.21845 0.95595 1.01473 1.01488 1.21159 0.95199 0.96513 0.98847 1.21911 1.01742 0.95852 1.01321 1.21703 0.94816 1.00465 0.97735 1.21000 0.94627 1.00636 0.93617 0.89997 1.22015 1.03573 0.98432 0.97173 1.21442 0.89680 1.03987 1.00048 1.23374 0.91258 0.74489 0.81239 1.90528 1.71177 1.44081 1.35070 1.86486 1.26061 1.73022 1.41558 1.20159 0.69585 0.92992 0.97627 0.93475 1.20889 0.91602 1.52792 0.91369 0.91436 1.24878 0.96460 0.94624 0.97582 1.70038 1.03746 1.47987 1.29150 0.86428 0.77685 0.78851 0.83682 1.20036 1.21137 1.20073 1.22586 1.02264 1.00143 0.88290 1.22353 0.90256 1.01213 1.02257 1.23291 1.00154 1.00152 1.03031 0.92829 0.92992 0.92859 0.90858 0.92825 0.92004 0.93129 0.91889 0.91893 0.93421 0.90550 0.92887 0.88555 0.88570 0.92616 0.89471 0.89382 0.90885 0.91168 0.88708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.19 37.16 0.34 -0.82 16 2 C -0.10 -0.92 2.78 -90.61 -0.25 -1.17 16 3 C -0.15 -1.43 8.95 37.16 0.33 -1.10 16 4 C -0.11 -1.09 4.15 -26.73 -0.11 -1.21 16 5 C -0.08 -1.02 1.90 -90.63 -0.17 -1.20 16 6 H 0.08 1.15 6.16 -51.93 -0.32 0.83 16 7 C -0.15 -2.04 8.70 37.16 0.32 -1.72 16 8 C -0.11 -1.64 5.29 -27.88 -0.15 -1.78 16 9 C 0.45 9.11 6.90 36.01 0.25 9.36 16 10 O -0.52 -11.42 11.02 -18.74 -0.21 -11.63 16 11 O -0.36 -8.38 9.85 -39.26 -0.39 -8.77 16 12 C 0.25 6.58 2.25 -27.88 -0.06 6.51 16 13 H 0.05 1.38 6.91 -51.93 -0.36 1.02 16 14 C -0.53 -14.78 8.88 -34.44 -0.31 -15.08 16 15 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 16 C 0.07 1.87 5.30 -17.82 -0.09 1.78 16 17 N -0.87 -24.35 11.43 55.43 0.63 -23.72 16 18 Si 0.91 21.03 29.54 -169.99 -5.02 16.01 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 C -0.11 -2.81 4.47 -90.62 -0.41 -3.22 16 23 C -0.12 -2.88 9.04 -26.69 -0.24 -3.12 16 24 C -0.23 -4.96 9.80 -26.69 -0.26 -5.22 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.70 6.34 -51.93 -0.33 0.37 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.66 6.46 -51.93 -0.34 0.32 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 1.24 5.96 -51.93 -0.31 0.93 16 36 H 0.05 0.62 6.46 -51.93 -0.34 0.28 16 37 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.09 2.22 8.11 -51.93 -0.42 1.80 16 41 H 0.09 2.19 8.05 -51.93 -0.42 1.77 16 42 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 43 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.09 2.09 5.37 -51.93 -0.28 1.81 16 LS Contribution 344.41 15.07 5.19 5.19 Total: -1.00 -28.99 344.41 -8.32 -37.32 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -7.73 Total: 3.58 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -0.81 Total: -17.99 kcal Atomic # 7 Polarization: -24.35 SS G_CDS: 0.63 Total: -23.72 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.59 Total: -20.40 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.99 -8.32 -37.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345547209.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.815 kcal (2) G-P(sol) polarization free energy of solvation -28.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds