Wall clock time and date at job start Mon Mar 30 2020 01:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46788 * 2 1 4 4 C 1.53005 * 109.47228 * 119.99458 * 2 1 3 5 5 C 1.52999 * 109.47264 * 174.99861 * 4 2 1 6 6 H 1.09002 * 109.46716 * 55.00469 * 5 4 2 7 7 C 1.52997 * 109.47317 * 295.00560 * 5 4 2 8 8 C 1.52992 * 109.46961 * 175.00098 * 5 4 2 9 9 C 1.50707 * 109.46966 * 185.00310 * 8 5 4 10 10 O 1.20818 * 119.99756 * 0.02562 * 9 8 5 11 11 O 1.34232 * 119.99708 * 180.02562 * 9 8 5 12 12 C 1.45200 * 116.99602 * 179.97438 * 11 9 8 13 13 H 1.09004 * 109.47185 * 30.00408 * 12 11 9 14 14 C 1.50707 * 109.47187 * 149.99636 * 12 11 9 15 15 H 1.07999 * 119.99539 * 0.02562 * 14 12 11 16 16 C 1.37879 * 120.00005 * 179.97438 * 14 12 11 17 17 N 1.31511 * 119.99898 * 0.02562 * 16 14 12 18 18 Si 1.86795 * 119.99593 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47640 * 60.00099 * 18 16 14 20 20 H 1.48500 * 109.47118 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47105 * 299.99850 * 18 16 14 22 22 C 1.52995 * 109.47383 * 269.99817 * 12 11 9 23 23 C 1.53002 * 117.49817 * 128.74510 * 22 12 11 24 24 C 1.53002 * 117.49609 * 60.08770 * 22 12 11 25 25 H 1.08996 * 109.47233 * 299.99692 * 1 2 3 26 26 H 1.09001 * 109.47288 * 60.00615 * 1 2 3 27 27 H 1.09002 * 109.46686 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47389 * 239.99635 * 2 1 3 29 29 H 1.08996 * 109.46982 * 60.00155 * 3 2 1 30 30 H 1.08997 * 109.46685 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46704 * 299.99742 * 3 2 1 32 32 H 1.09006 * 109.46782 * 54.99894 * 4 2 1 33 33 H 1.08997 * 109.47391 * 295.00889 * 4 2 1 34 34 H 1.09002 * 109.47153 * 299.99641 * 7 5 4 35 35 H 1.09001 * 109.46832 * 179.97438 * 7 5 4 36 36 H 1.09004 * 109.47261 * 59.99813 * 7 5 4 37 37 H 1.08996 * 109.47729 * 305.00119 * 8 5 4 38 38 H 1.09001 * 109.47563 * 65.00698 * 8 5 4 39 39 H 0.96999 * 119.99743 * 179.97438 * 17 16 14 40 40 H 1.08996 * 115.55017 * 274.41899 * 22 12 11 41 41 H 1.08998 * 117.49851 * 0.02562 * 23 22 12 42 42 H 1.09005 * 117.49630 * 145.02220 * 23 22 12 43 43 H 1.09005 * 117.49694 * 214.98185 * 24 22 12 44 44 H 1.08997 * 117.50265 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 3.5649 -0.8310 1.1881 6 1 3.9954 0.1612 1.0528 7 6 3.9650 -1.7251 0.0128 8 6 4.0851 -1.4392 2.4919 9 6 5.5922 -1.4343 2.4823 10 8 6.1887 -0.9895 1.5305 11 8 6.2716 -1.9241 3.5313 12 6 7.7210 -1.8878 3.4529 13 1 8.0308 -1.0372 2.8457 14 6 8.2958 -1.7510 4.8393 15 1 7.6376 -1.6972 5.6938 16 6 9.6620 -1.6956 5.0168 17 7 10.4635 -1.7616 3.9762 18 14 10.3743 -1.5268 6.7353 19 1 9.9519 -2.6854 7.5624 20 1 11.8567 -1.4895 6.6552 21 1 9.8808 -0.2704 7.3545 22 6 8.2299 -3.1821 2.8152 23 6 9.2014 -3.0561 1.6399 24 6 7.7579 -3.5033 1.3957 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6054 -1.7197 1.2953 33 1 1.7516 -0.1583 2.1370 34 1 3.5345 -2.7173 0.1481 35 1 5.0514 -1.8029 -0.0311 36 1 3.5943 -1.2917 -0.9162 37 1 3.7254 -0.8512 3.3362 38 1 3.7258 -2.4642 2.5836 39 1 11.4246 -1.7222 4.1011 40 1 8.3733 -4.0184 3.4993 41 1 9.4782 -2.0511 1.3212 42 1 9.9837 -3.8099 1.5506 43 1 7.5912 -4.5511 1.1458 44 1 7.0845 -2.7929 0.9163 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345547209.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:16 Heat of formation + Delta-G solvation = -111.382656 kcal Electronic energy + Delta-G solvation = -21334.452171 eV Core-core repulsion = 18251.033009 eV Total energy + Delta-G solvation = -3083.419162 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.44449 -38.94960 -37.90614 -36.63994 -34.70542 -34.44601 -30.27598 -28.84641 -27.95571 -27.47859 -25.28990 -23.10956 -22.99945 -21.46586 -20.84242 -20.26452 -18.90385 -18.26987 -17.26149 -17.19671 -16.58015 -15.98751 -15.71901 -15.52544 -15.00591 -14.61052 -14.48664 -14.23864 -13.71123 -13.53700 -13.26529 -13.12148 -12.98067 -12.91038 -12.74430 -12.57821 -12.31698 -12.24749 -12.17928 -12.13131 -11.85442 -11.78685 -11.56462 -11.30471 -11.20550 -11.16481 -11.01117 -10.84063 -10.58527 -10.42197 -8.21249 -6.38353 1.41952 1.44829 1.47879 1.52673 2.10398 2.45328 3.05980 3.24119 3.74992 3.88663 3.95523 4.10215 4.16868 4.21785 4.30958 4.36467 4.45696 4.52138 4.63740 4.69974 4.73889 4.77947 4.81535 4.84879 4.89230 5.00979 5.07010 5.09795 5.11463 5.18113 5.21423 5.27539 5.35081 5.35786 5.42102 5.48149 5.52497 5.59771 5.61131 5.67357 5.90044 6.22899 6.65893 7.10554 7.32858 8.84699 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.029940 B = 0.004139 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.975216 B = 6763.960418 C = 7268.171352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 C -0.152 4.152 4 C -0.102 4.102 5 C -0.076 4.076 6 H 0.063 0.937 7 C -0.152 4.152 8 C -0.105 4.105 9 C 0.443 3.557 10 O -0.541 6.541 11 O -0.368 6.368 12 C 0.255 3.745 13 H 0.005 0.995 14 C -0.559 4.559 15 H 0.063 0.937 16 C 0.025 3.975 17 N -0.895 5.895 18 Si 0.974 3.026 19 H -0.267 1.267 20 H -0.279 1.279 21 H -0.271 1.271 22 C -0.131 4.131 23 C -0.124 4.124 24 C -0.198 4.198 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.043 0.957 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.040 0.960 36 H 0.065 0.935 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.267 0.733 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.087 0.913 43 H 0.102 0.898 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.981 0.402 -6.101 18.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 C -0.209 4.209 4 C -0.140 4.140 5 C -0.094 4.094 6 H 0.081 0.919 7 C -0.209 4.209 8 C -0.142 4.142 9 C 0.289 3.711 10 O -0.433 6.433 11 O -0.285 6.285 12 C 0.202 3.798 13 H 0.023 0.977 14 C -0.596 4.596 15 H 0.081 0.919 16 C -0.177 4.177 17 N -0.531 5.531 18 Si 0.798 3.202 19 H -0.192 1.192 20 H -0.204 1.204 21 H -0.196 1.196 22 C -0.150 4.150 23 C -0.161 4.161 24 C -0.235 4.235 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.135 0.865 38 H 0.138 0.862 39 H 0.076 0.924 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.106 0.894 43 H 0.120 0.880 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.568 0.523 -6.421 17.776 hybrid contribution 1.189 0.249 0.667 1.386 sum -15.379 0.771 -5.754 16.438 Atomic orbital electron populations 1.21809 0.94212 1.02089 1.01957 1.21155 0.96289 0.95930 0.98304 1.21914 1.00569 0.96506 1.01907 1.21655 0.92184 1.01598 0.98514 1.20983 0.96662 0.99295 0.92482 0.91888 1.21964 1.01223 0.99557 0.98150 1.21638 0.84794 1.05992 1.01790 1.24580 0.93369 0.73248 0.79936 1.90523 1.72200 1.44861 1.35700 1.86479 1.24652 1.73948 1.43375 1.19764 0.71366 0.92237 0.96458 0.97689 1.21187 0.92412 1.54072 0.91946 0.91922 1.25725 0.96540 0.93815 1.01662 1.70157 1.03962 1.47867 1.31113 0.85377 0.77022 0.79050 0.78772 1.19155 1.20374 1.19604 1.22392 1.04180 0.99164 0.89300 1.22263 0.91599 1.00439 1.01784 1.23284 0.98470 1.01707 1.00012 0.92464 0.92493 0.92168 0.91198 0.92465 0.93808 0.92382 0.90448 0.91033 0.91928 0.94098 0.91654 0.86545 0.86206 0.92431 0.90428 0.91831 0.89418 0.87979 0.89298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.19 71.98 0.66 -1.22 16 2 C -0.10 -1.61 2.78 -10.79 -0.03 -1.64 16 3 C -0.15 -2.70 8.95 71.98 0.64 -2.06 16 4 C -0.10 -1.77 4.15 30.60 0.13 -1.64 16 5 C -0.08 -1.83 1.90 -10.80 -0.02 -1.85 16 6 H 0.06 1.78 6.16 -2.39 -0.01 1.76 16 7 C -0.15 -3.85 8.70 71.98 0.63 -3.23 16 8 C -0.10 -2.86 5.29 29.85 0.16 -2.70 16 9 C 0.44 18.05 6.90 71.24 0.49 18.55 16 10 O -0.54 -24.76 11.02 21.99 0.24 -24.51 16 11 O -0.37 -17.74 9.85 -51.43 -0.51 -18.24 16 12 C 0.25 13.97 2.25 29.85 0.07 14.03 16 13 H 0.01 0.33 6.91 -2.39 -0.02 0.31 16 14 C -0.56 -32.03 8.88 25.60 0.23 -31.81 16 15 H 0.06 3.54 7.81 -2.91 -0.02 3.52 16 16 C 0.02 1.36 5.30 84.66 0.45 1.81 16 17 N -0.90 -50.85 11.43 21.45 0.25 -50.60 16 18 Si 0.97 43.23 29.54 68.60 2.03 45.25 16 19 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 20 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 22 C -0.13 -6.61 4.47 -10.79 -0.05 -6.66 16 23 C -0.12 -5.84 9.04 30.62 0.28 -5.57 16 24 C -0.20 -8.49 9.80 30.62 0.30 -8.19 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.07 1.20 6.34 -2.39 -0.02 1.18 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.04 0.93 6.46 -2.39 -0.02 0.91 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.06 1.37 8.14 -2.39 -0.02 1.36 16 35 H 0.04 1.33 5.96 -2.39 -0.01 1.32 16 36 H 0.06 1.46 6.46 -2.38 -0.02 1.45 16 37 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 38 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 39 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 40 H 0.08 4.02 8.11 -2.39 -0.02 4.00 16 41 H 0.06 3.30 8.05 -2.39 -0.02 3.28 16 42 H 0.09 3.83 8.14 -2.38 -0.02 3.81 16 43 H 0.10 3.73 8.14 -2.38 -0.02 3.71 16 44 H 0.09 3.96 5.37 -2.39 -0.01 3.94 16 Total: -1.00 -64.45 344.41 6.89 -57.56 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 0.95 Total: 22.72 kcal Atomic # 6 Polarization: -36.10 SS G_CDS: 3.93 Total: -32.17 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: 0.25 Total: -50.60 kcal Atomic # 8 Polarization: -42.49 SS G_CDS: -0.26 Total: -42.76 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -64.45 6.89 -57.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345547209.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.819 kcal (2) G-P(sol) polarization free energy of solvation -64.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds