Wall clock time and date at job start Mon Mar 30 2020 01:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53002 * 109.46862 * 119.99452 * 2 1 3 5 5 C 1.53004 * 109.47123 * 64.99607 * 4 2 1 6 6 H 1.08999 * 109.47217 * 305.00475 * 5 4 2 7 7 C 1.53008 * 109.46816 * 65.00194 * 5 4 2 8 8 C 1.52996 * 109.47336 * 184.99877 * 5 4 2 9 9 C 1.50697 * 109.47491 * 175.00150 * 8 5 4 10 10 O 1.20833 * 119.99747 * 0.02562 * 9 8 5 11 11 O 1.34230 * 120.00262 * 179.72204 * 9 8 5 12 12 C 1.45202 * 116.99836 * 180.27336 * 11 9 8 13 13 H 1.09000 * 109.47281 * 330.00745 * 12 11 9 14 14 C 1.50695 * 109.47280 * 210.00118 * 12 11 9 15 15 H 1.08003 * 120.00156 * 0.02562 * 14 12 11 16 16 C 1.37871 * 120.00318 * 179.97438 * 14 12 11 17 17 N 1.31520 * 120.00405 * 179.97438 * 16 14 12 18 18 Si 1.86799 * 119.99860 * 0.02562 * 16 14 12 19 19 H 1.48505 * 109.47238 * 89.99641 * 18 16 14 20 20 H 1.48501 * 109.47116 * 209.99332 * 18 16 14 21 21 H 1.48495 * 109.47085 * 329.99389 * 18 16 14 22 22 C 1.53000 * 109.46662 * 90.00373 * 12 11 9 23 23 C 1.52999 * 117.50283 * 8.75014 * 22 12 11 24 24 C 1.52996 * 117.50308 * 300.08505 * 22 12 11 25 25 H 1.08992 * 109.47316 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46915 * 300.00850 * 1 2 3 27 27 H 1.08997 * 109.46459 * 60.00489 * 1 2 3 28 28 H 1.08990 * 109.47319 * 239.99088 * 2 1 3 29 29 H 1.08997 * 109.47217 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.46471 * 299.99773 * 3 2 1 31 31 H 1.08998 * 109.47447 * 59.98934 * 3 2 1 32 32 H 1.09005 * 109.47088 * 305.00387 * 4 2 1 33 33 H 1.08996 * 109.47299 * 184.99987 * 4 2 1 34 34 H 1.09001 * 109.46930 * 299.99894 * 7 5 4 35 35 H 1.09000 * 109.46973 * 59.99593 * 7 5 4 36 36 H 1.08995 * 109.47053 * 180.02562 * 7 5 4 37 37 H 1.09004 * 109.47066 * 55.00351 * 8 5 4 38 38 H 1.09000 * 109.47234 * 295.00860 * 8 5 4 39 39 H 0.96997 * 120.00036 * 180.02562 * 17 16 14 40 40 H 1.09008 * 115.54924 * 154.41019 * 22 12 11 41 41 H 1.09007 * 117.49732 * 359.97438 * 23 22 12 42 42 H 1.08999 * 117.50660 * 145.01676 * 23 22 12 43 43 H 1.08997 * 117.50332 * 214.98063 * 24 22 12 44 44 H 1.09004 * 117.49568 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6351 -2.1954 1.1882 6 1 0.5562 -2.2706 1.0529 7 6 2.3448 -2.8708 0.0130 8 6 2.0351 -2.8887 2.4921 9 6 1.5282 -4.3078 2.4827 10 8 0.9107 -4.7223 1.5304 11 8 1.7679 -5.1131 3.5294 12 6 1.2549 -6.4691 3.4489 13 1 0.3489 -6.4795 2.8430 14 6 0.9383 -6.9696 4.8346 15 1 1.1055 -6.3322 5.6903 16 6 0.4343 -8.2408 5.0100 17 7 0.1584 -8.6778 6.2195 18 14 0.1444 -9.3431 3.5301 19 1 1.3701 -10.1354 3.2553 20 1 -0.9867 -10.2630 3.8120 21 1 -0.1805 -8.5073 2.3465 22 6 2.3077 -7.3753 2.8075 23 6 3.7012 -6.7868 2.5780 24 6 2.7676 -7.0304 1.3896 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8898 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9562 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.6053 -0.2616 2.1370 33 1 3.1263 -0.6443 1.2953 34 1 2.0598 -2.3769 -0.9160 35 1 3.4237 -2.7956 0.1483 36 1 2.0560 -3.9209 -0.0309 37 1 1.6007 -2.3533 3.3364 38 1 3.1213 -2.8914 2.5838 39 1 -0.1958 -9.5723 6.3429 40 1 2.2447 -8.4306 3.0735 41 1 3.8679 -5.7538 2.8836 42 1 4.5549 -7.4548 2.6925 43 1 3.0074 -7.8586 0.7228 44 1 2.3198 -6.1581 0.9136 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345547211.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:19 Heat of formation + Delta-G solvation = -89.422692 kcal Electronic energy + Delta-G solvation = -21507.864454 eV Core-core repulsion = 18425.397548 eV Total energy + Delta-G solvation = -3082.466906 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.13172 -37.97939 -36.65676 -34.98015 -33.54096 -32.74437 -29.11476 -27.79361 -27.30001 -26.67347 -23.03548 -22.05570 -21.67381 -20.43927 -19.48153 -19.23129 -17.19680 -16.66148 -16.13015 -15.91352 -15.35141 -15.04067 -14.25591 -14.15620 -13.78540 -13.62976 -13.30031 -12.87636 -12.72604 -12.42658 -12.21255 -11.99685 -11.83693 -11.70746 -11.41130 -11.38215 -11.31818 -11.03404 -10.92358 -10.75068 -10.67836 -10.44060 -10.37745 -10.20874 -9.92095 -9.71125 -9.57612 -9.28314 -8.80263 -8.67636 -6.23167 -4.25329 2.85564 3.17706 3.30271 3.37118 3.51056 4.26993 4.52784 4.61394 4.72693 4.76976 4.98751 5.05077 5.09244 5.29139 5.44505 5.49689 5.50311 5.52844 5.57172 5.64262 5.68368 5.69278 5.72844 5.77976 5.78569 5.83605 5.96331 5.98130 6.10008 6.13053 6.19236 6.21690 6.33489 6.44746 6.50376 6.53495 6.74624 6.79493 6.87725 7.36238 7.53408 8.24556 8.62119 8.84583 9.34046 10.88633 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.031854 B = 0.004379 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.791101 B = 6392.973224 C = 6616.371626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.099 4.099 3 C -0.147 4.147 4 C -0.110 4.110 5 C -0.081 4.081 6 H 0.083 0.917 7 C -0.155 4.155 8 C -0.114 4.114 9 C 0.451 3.549 10 O -0.516 6.516 11 O -0.341 6.341 12 C 0.225 3.775 13 H 0.051 0.949 14 C -0.520 4.520 15 H 0.087 0.913 16 C 0.080 3.920 17 N -0.888 5.888 18 Si 0.873 3.127 19 H -0.274 1.274 20 H -0.288 1.288 21 H -0.256 1.256 22 C -0.163 4.163 23 C -0.170 4.170 24 C -0.207 4.207 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.269 0.731 40 H 0.107 0.893 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.919 15.076 -11.731 19.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 C -0.204 4.204 4 C -0.147 4.147 5 C -0.099 4.099 6 H 0.101 0.899 7 C -0.212 4.212 8 C -0.152 4.152 9 C 0.295 3.705 10 O -0.407 6.407 11 O -0.256 6.256 12 C 0.171 3.829 13 H 0.069 0.931 14 C -0.557 4.557 15 H 0.105 0.895 16 C -0.123 4.123 17 N -0.524 5.524 18 Si 0.701 3.299 19 H -0.201 1.201 20 H -0.215 1.215 21 H -0.180 1.180 22 C -0.182 4.182 23 C -0.207 4.207 24 C -0.244 4.244 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.093 0.907 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.079 0.921 40 H 0.125 0.875 41 H 0.111 0.889 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.657 14.753 -11.858 19.493 hybrid contribution -0.110 -0.941 -0.649 1.148 sum 4.548 13.812 -12.508 19.181 Atomic orbital electron populations 1.21912 0.95324 1.02218 1.01395 1.21152 0.95963 0.95801 0.98769 1.21845 1.00804 0.96236 1.01544 1.21701 1.00864 0.94315 0.97846 1.21019 1.01798 0.93683 0.93448 0.89915 1.22020 0.99436 1.02494 0.97285 1.21463 1.03155 0.90160 1.00372 1.23540 0.76990 0.88923 0.81052 1.90540 1.38640 1.76493 1.34980 1.86526 1.71202 1.26186 1.41698 1.20426 0.91064 0.73229 0.98161 0.93099 1.20728 1.43639 1.00570 0.90769 0.89462 1.24722 0.94490 0.97153 0.95928 1.69842 1.43332 1.18484 1.20791 0.87051 0.77760 0.81162 0.83929 1.20053 1.21512 1.18039 1.23417 0.97275 1.00985 0.96504 1.22748 0.93514 1.01963 1.02494 1.23269 1.05391 1.03851 0.91844 0.92054 0.92776 0.93093 0.90884 0.92836 0.92961 0.92790 0.91794 0.91830 0.92771 0.93325 0.90706 0.88197 0.88378 0.92081 0.87540 0.88925 0.89724 0.90062 0.87911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.96 37.16 0.33 -1.02 16 2 C -0.10 -0.86 2.78 -90.62 -0.25 -1.11 16 3 C -0.15 -1.11 9.19 37.16 0.34 -0.76 16 4 C -0.11 -1.02 4.15 -26.73 -0.11 -1.13 16 5 C -0.08 -0.96 1.90 -90.62 -0.17 -1.13 16 6 H 0.08 1.09 6.16 -51.93 -0.32 0.77 16 7 C -0.16 -1.89 8.70 37.16 0.32 -1.57 16 8 C -0.11 -1.52 5.29 -27.89 -0.15 -1.67 16 9 C 0.45 8.48 6.63 36.00 0.24 8.71 16 10 O -0.52 -10.61 11.02 -18.76 -0.21 -10.81 16 11 O -0.34 -7.58 8.38 -39.26 -0.33 -7.91 16 12 C 0.23 5.62 2.00 -27.89 -0.06 5.57 16 13 H 0.05 1.35 6.21 -51.93 -0.32 1.03 16 14 C -0.52 -14.85 9.48 -34.44 -0.33 -15.18 16 15 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 16 C 0.08 2.30 5.44 -17.82 -0.10 2.21 16 17 N -0.89 -26.67 13.96 55.43 0.77 -25.90 16 18 Si 0.87 21.60 24.48 -169.99 -4.16 17.44 16 19 H -0.27 -6.52 6.73 56.52 0.38 -6.14 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.26 -6.28 6.53 56.52 0.37 -5.91 16 22 C -0.16 -3.73 4.45 -90.62 -0.40 -4.14 16 23 C -0.17 -3.28 9.80 -26.69 -0.26 -3.54 16 24 C -0.21 -4.04 9.85 -26.69 -0.26 -4.31 16 25 H 0.06 0.62 6.46 -51.93 -0.34 0.28 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.66 6.34 -51.93 -0.33 0.33 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.59 6.46 -51.93 -0.34 0.25 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 1.12 5.96 -51.93 -0.31 0.81 16 37 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.11 2.55 4.40 -51.92 -0.23 2.33 16 41 H 0.09 1.73 6.91 -51.93 -0.36 1.37 16 42 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 43 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 44 H 0.10 2.04 5.37 -51.93 -0.28 1.77 16 LS Contribution 335.14 15.07 5.05 5.05 Total: -1.00 -30.40 335.14 -7.23 -37.63 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -7.50 Total: 3.58 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: -0.85 Total: -19.08 kcal Atomic # 7 Polarization: -26.67 SS G_CDS: 0.77 Total: -25.90 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -0.54 Total: -18.72 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.16 Total: 17.44 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.40 -7.23 -37.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345547211.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.791 kcal (2) G-P(sol) polarization free energy of solvation -30.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds