Wall clock time and date at job start Mon Mar 30 2020 01:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53002 * 109.46862 * 119.99452 * 2 1 3 5 5 C 1.53004 * 109.47123 * 64.99607 * 4 2 1 6 6 H 1.08999 * 109.47217 * 305.00475 * 5 4 2 7 7 C 1.53008 * 109.46816 * 65.00194 * 5 4 2 8 8 C 1.52996 * 109.47336 * 184.99877 * 5 4 2 9 9 C 1.50697 * 109.47491 * 175.00150 * 8 5 4 10 10 O 1.20833 * 119.99747 * 0.02562 * 9 8 5 11 11 O 1.34230 * 120.00262 * 179.72204 * 9 8 5 12 12 C 1.45202 * 116.99836 * 180.27336 * 11 9 8 13 13 H 1.09000 * 109.47281 * 330.00745 * 12 11 9 14 14 C 1.50695 * 109.47280 * 210.00118 * 12 11 9 15 15 H 1.08003 * 120.00156 * 0.02562 * 14 12 11 16 16 C 1.37871 * 120.00318 * 179.97438 * 14 12 11 17 17 N 1.31520 * 120.00405 * 179.97438 * 16 14 12 18 18 Si 1.86799 * 119.99860 * 0.02562 * 16 14 12 19 19 H 1.48505 * 109.47238 * 89.99641 * 18 16 14 20 20 H 1.48501 * 109.47116 * 209.99332 * 18 16 14 21 21 H 1.48495 * 109.47085 * 329.99389 * 18 16 14 22 22 C 1.53000 * 109.46662 * 90.00373 * 12 11 9 23 23 C 1.52999 * 117.50283 * 8.75014 * 22 12 11 24 24 C 1.52996 * 117.50308 * 300.08505 * 22 12 11 25 25 H 1.08992 * 109.47316 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46915 * 300.00850 * 1 2 3 27 27 H 1.08997 * 109.46459 * 60.00489 * 1 2 3 28 28 H 1.08990 * 109.47319 * 239.99088 * 2 1 3 29 29 H 1.08997 * 109.47217 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.46471 * 299.99773 * 3 2 1 31 31 H 1.08998 * 109.47447 * 59.98934 * 3 2 1 32 32 H 1.09005 * 109.47088 * 305.00387 * 4 2 1 33 33 H 1.08996 * 109.47299 * 184.99987 * 4 2 1 34 34 H 1.09001 * 109.46930 * 299.99894 * 7 5 4 35 35 H 1.09000 * 109.46973 * 59.99593 * 7 5 4 36 36 H 1.08995 * 109.47053 * 180.02562 * 7 5 4 37 37 H 1.09004 * 109.47066 * 55.00351 * 8 5 4 38 38 H 1.09000 * 109.47234 * 295.00860 * 8 5 4 39 39 H 0.96997 * 120.00036 * 180.02562 * 17 16 14 40 40 H 1.09008 * 115.54924 * 154.41019 * 22 12 11 41 41 H 1.09007 * 117.49732 * 359.97438 * 23 22 12 42 42 H 1.08999 * 117.50660 * 145.01676 * 23 22 12 43 43 H 1.08997 * 117.50332 * 214.98063 * 24 22 12 44 44 H 1.09004 * 117.49568 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6351 -2.1954 1.1882 6 1 0.5562 -2.2706 1.0529 7 6 2.3448 -2.8708 0.0130 8 6 2.0351 -2.8887 2.4921 9 6 1.5282 -4.3078 2.4827 10 8 0.9107 -4.7223 1.5304 11 8 1.7679 -5.1131 3.5294 12 6 1.2549 -6.4691 3.4489 13 1 0.3489 -6.4795 2.8430 14 6 0.9383 -6.9696 4.8346 15 1 1.1055 -6.3322 5.6903 16 6 0.4343 -8.2408 5.0100 17 7 0.1584 -8.6778 6.2195 18 14 0.1444 -9.3431 3.5301 19 1 1.3701 -10.1354 3.2553 20 1 -0.9867 -10.2630 3.8120 21 1 -0.1805 -8.5073 2.3465 22 6 2.3077 -7.3753 2.8075 23 6 3.7012 -6.7868 2.5780 24 6 2.7676 -7.0304 1.3896 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8898 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9562 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.6053 -0.2616 2.1370 33 1 3.1263 -0.6443 1.2953 34 1 2.0598 -2.3769 -0.9160 35 1 3.4237 -2.7956 0.1483 36 1 2.0560 -3.9209 -0.0309 37 1 1.6007 -2.3533 3.3364 38 1 3.1213 -2.8914 2.5838 39 1 -0.1958 -9.5723 6.3429 40 1 2.2447 -8.4306 3.0735 41 1 3.8679 -5.7538 2.8836 42 1 4.5549 -7.4548 2.6925 43 1 3.0074 -7.8586 0.7228 44 1 2.3198 -6.1581 0.9136 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345547211.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:18 Heat of formation + Delta-G solvation = -105.547968 kcal Electronic energy + Delta-G solvation = -21508.563699 eV Core-core repulsion = 18425.397548 eV Total energy + Delta-G solvation = -3083.166151 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.69575 -39.11558 -38.01657 -36.60709 -34.91537 -34.47486 -30.93963 -29.08681 -27.96276 -27.48885 -24.97888 -23.47942 -23.11343 -21.75941 -20.81323 -20.27936 -19.05407 -18.37732 -17.82871 -17.39011 -16.76236 -15.98025 -15.69926 -15.41988 -15.11617 -14.79182 -14.61399 -14.44840 -13.87331 -13.64734 -13.50719 -13.35082 -13.08408 -12.98379 -12.74750 -12.57984 -12.40990 -12.32598 -12.19882 -12.12201 -11.92601 -11.82878 -11.60508 -11.44028 -11.26940 -11.17409 -11.13653 -10.90978 -10.76591 -10.64520 -8.45392 -6.53096 1.20801 1.28966 1.36370 1.41028 2.01171 2.19392 2.82663 2.98133 3.71615 3.77769 3.88581 3.94000 4.01279 4.11233 4.12535 4.19965 4.32036 4.46962 4.58525 4.65003 4.68378 4.70790 4.74324 4.82981 4.84152 4.88120 4.99391 5.01375 5.06167 5.09240 5.11488 5.17386 5.20737 5.23419 5.34488 5.36307 5.40007 5.49401 5.59904 5.64770 5.75833 6.18667 6.50618 6.97111 7.13389 8.70392 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.031854 B = 0.004379 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.791101 B = 6392.973224 C = 6616.371626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.098 4.098 3 C -0.144 4.144 4 C -0.103 4.103 5 C -0.076 4.076 6 H 0.065 0.935 7 C -0.152 4.152 8 C -0.107 4.107 9 C 0.444 3.556 10 O -0.535 6.535 11 O -0.355 6.355 12 C 0.233 3.767 13 H 0.028 0.972 14 C -0.533 4.533 15 H 0.046 0.954 16 C 0.032 3.968 17 N -0.930 5.930 18 Si 0.937 3.063 19 H -0.254 1.254 20 H -0.283 1.283 21 H -0.256 1.256 22 C -0.201 4.201 23 C -0.151 4.151 24 C -0.187 4.187 25 H 0.045 0.955 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.043 0.957 37 H 0.115 0.885 38 H 0.123 0.877 39 H 0.274 0.726 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.110 0.890 43 H 0.106 0.894 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.530 16.069 -13.739 22.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.116 4.116 3 C -0.202 4.202 4 C -0.140 4.140 5 C -0.095 4.095 6 H 0.083 0.917 7 C -0.209 4.209 8 C -0.144 4.144 9 C 0.290 3.710 10 O -0.426 6.426 11 O -0.271 6.271 12 C 0.179 3.821 13 H 0.046 0.954 14 C -0.571 4.571 15 H 0.064 0.936 16 C -0.168 4.168 17 N -0.569 5.569 18 Si 0.761 3.239 19 H -0.179 1.179 20 H -0.209 1.209 21 H -0.180 1.180 22 C -0.219 4.219 23 C -0.188 4.188 24 C -0.224 4.224 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.134 0.866 38 H 0.141 0.859 39 H 0.084 0.916 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.128 0.872 43 H 0.124 0.876 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.280 15.768 -13.876 21.923 hybrid contribution -0.637 -1.132 0.011 1.299 sum 5.643 14.637 -13.865 20.936 Atomic orbital electron populations 1.21917 0.95851 1.01296 1.01861 1.21146 0.95510 0.96615 0.98325 1.21815 1.01210 0.95214 1.01918 1.21659 1.01755 0.92158 0.98475 1.21001 1.00754 0.95292 0.92439 0.91707 1.21972 1.00310 1.00606 0.98032 1.21670 1.04502 0.86303 1.01923 1.24632 0.76425 0.90186 0.79776 1.90533 1.39479 1.77110 1.35449 1.86516 1.71508 1.25432 1.43674 1.19936 0.91457 0.75261 0.95452 0.95394 1.20927 1.44007 1.00491 0.91647 0.93556 1.25518 0.93946 0.98556 0.98760 1.69964 1.44519 1.19330 1.23054 0.86022 0.78478 0.79234 0.80117 1.17907 1.20920 1.17970 1.23153 0.99196 0.99929 0.99617 1.22888 0.92459 1.02440 1.01035 1.23297 1.04056 1.04234 0.90779 0.93636 0.92600 0.92404 0.91056 0.92163 0.92500 0.92578 0.91199 0.90439 0.91656 0.91875 0.93751 0.86642 0.85946 0.91618 0.88671 0.88555 0.87216 0.87573 0.88460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 8.96 71.98 0.64 -1.88 16 2 C -0.10 -1.47 2.78 -10.79 -0.03 -1.50 16 3 C -0.14 -1.78 9.19 71.98 0.66 -1.12 16 4 C -0.10 -1.64 4.15 30.60 0.13 -1.51 16 5 C -0.08 -1.67 1.90 -10.79 -0.02 -1.70 16 6 H 0.06 1.67 6.16 -2.39 -0.01 1.66 16 7 C -0.15 -3.43 8.70 71.98 0.63 -2.80 16 8 C -0.11 -2.66 5.29 29.85 0.16 -2.50 16 9 C 0.44 16.52 6.63 71.23 0.47 16.99 16 10 O -0.53 -22.04 11.02 21.94 0.24 -21.80 16 11 O -0.36 -15.95 8.38 -51.41 -0.43 -16.38 16 12 C 0.23 11.86 2.00 29.85 0.06 11.92 16 13 H 0.03 1.54 6.21 -2.39 -0.01 1.52 16 14 C -0.53 -31.69 9.48 25.60 0.24 -31.45 16 15 H 0.05 3.03 8.06 -2.91 -0.02 3.01 16 16 C 0.03 1.87 5.44 84.65 0.46 2.33 16 17 N -0.93 -57.54 13.96 21.45 0.30 -57.24 16 18 Si 0.94 45.14 24.48 68.60 1.68 46.82 16 19 H -0.25 -11.34 6.73 99.48 0.67 -10.67 16 20 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 21 H -0.26 -12.19 6.53 99.48 0.65 -11.54 16 22 C -0.20 -8.96 4.45 -10.80 -0.05 -9.01 16 23 C -0.15 -5.46 9.80 30.62 0.30 -5.16 16 24 C -0.19 -6.87 9.85 30.62 0.30 -6.56 16 25 H 0.04 0.89 6.46 -2.39 -0.02 0.88 16 26 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.07 1.11 6.34 -2.39 -0.02 1.09 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.06 1.30 6.46 -2.39 -0.02 1.28 16 35 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.04 1.28 5.96 -2.39 -0.01 1.27 16 37 H 0.12 2.56 8.14 -2.38 -0.02 2.54 16 38 H 0.12 2.50 8.14 -2.39 -0.02 2.49 16 39 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 40 H 0.10 4.45 4.40 -2.38 -0.01 4.43 16 41 H 0.10 3.38 6.91 -2.38 -0.02 3.37 16 42 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 43 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 44 H 0.10 3.71 5.37 -2.38 -0.01 3.70 16 Total: -1.00 -68.07 335.14 6.61 -61.46 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 0.87 Total: 21.08 kcal Atomic # 6 Polarization: -37.90 SS G_CDS: 3.95 Total: -33.94 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: 0.30 Total: -57.24 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -0.19 Total: -38.18 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.68 Total: 46.82 kcal Total: -68.07 6.61 -61.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345547211.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.089 kcal (2) G-P(sol) polarization free energy of solvation -68.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds