Wall clock time and date at job start Mon Mar 30 2020 01:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47431 * 2 1 4 4 C 1.53005 * 109.46931 * 120.00147 * 2 1 3 5 5 C 1.52999 * 109.47157 * 65.45478 * 4 2 1 6 6 H 1.09003 * 109.47264 * 306.06728 * 5 4 2 7 7 C 1.52998 * 109.46963 * 186.06468 * 5 4 2 8 8 C 1.52998 * 109.46811 * 66.06705 * 5 4 2 9 9 C 1.50708 * 109.46960 * 184.99829 * 8 5 4 10 10 O 1.20825 * 119.99629 * 0.02562 * 9 8 5 11 11 O 1.34227 * 120.00254 * 179.97438 * 9 8 5 12 12 C 1.45200 * 116.99992 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.46818 * 330.00183 * 12 11 9 14 14 C 1.50699 * 109.47082 * 210.00455 * 12 11 9 15 15 H 1.08007 * 119.99778 * 0.02562 * 14 12 11 16 16 C 1.37874 * 120.00197 * 179.97438 * 14 12 11 17 17 N 1.31509 * 119.99726 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 120.00152 * 179.97438 * 16 14 12 19 19 H 1.48509 * 109.46656 * 60.00550 * 18 16 14 20 20 H 1.48504 * 109.47039 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47391 * 300.00621 * 18 16 14 22 22 C 1.52998 * 109.46976 * 90.00444 * 12 11 9 23 23 C 1.52996 * 117.49949 * 8.74669 * 22 12 11 24 24 C 1.53002 * 117.49959 * 300.08470 * 22 12 11 25 25 H 1.09004 * 109.47235 * 294.51139 * 1 2 3 26 26 H 1.08998 * 109.47199 * 54.50799 * 1 2 3 27 27 H 1.08994 * 109.47655 * 174.50639 * 1 2 3 28 28 H 1.08996 * 109.47358 * 240.00013 * 2 1 3 29 29 H 1.08997 * 109.47485 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47442 * 300.00409 * 3 2 1 31 31 H 1.09009 * 109.46714 * 59.99873 * 3 2 1 32 32 H 1.09003 * 109.47082 * 305.44978 * 4 2 1 33 33 H 1.09002 * 109.46543 * 185.45759 * 4 2 1 34 34 H 1.09002 * 109.46731 * 54.27458 * 7 5 4 35 35 H 1.09003 * 109.46620 * 174.26813 * 7 5 4 36 36 H 1.08992 * 109.47259 * 294.27309 * 7 5 4 37 37 H 1.08998 * 109.47380 * 304.99750 * 8 5 4 38 38 H 1.08998 * 109.47211 * 65.00295 * 8 5 4 39 39 H 0.97002 * 119.99812 * 179.97438 * 17 16 14 40 40 H 1.09002 * 115.54779 * 154.41745 * 22 12 11 41 41 H 1.09000 * 117.50014 * 359.97438 * 23 22 12 42 42 H 1.09000 * 117.49697 * 145.02490 * 23 22 12 43 43 H 1.08997 * 117.49918 * 214.98292 * 24 22 12 44 44 H 1.08999 * 117.49518 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6450 -2.1979 1.1826 6 1 0.5696 -2.2796 1.0241 7 6 2.0207 -2.8862 2.4964 8 6 2.3838 -2.8716 0.0245 9 6 1.9038 -4.2930 -0.1186 10 8 1.0572 -4.7228 0.6288 11 8 2.4159 -5.0811 -1.0768 12 6 1.9061 -6.4384 -1.1563 13 1 1.6046 -6.7719 -0.1634 14 6 2.9832 -7.3493 -1.6866 15 1 3.9540 -6.9482 -1.9383 16 6 2.7298 -8.6947 -1.8495 17 7 1.5479 -9.1830 -1.5425 18 14 4.0647 -9.8237 -2.5074 19 1 5.2371 -9.7871 -1.5966 20 1 3.5434 -11.2118 -2.5886 21 1 4.4748 -9.3694 -3.8605 22 6 0.6988 -6.4755 -2.0954 23 6 0.3920 -5.2120 -2.9018 24 6 -0.5081 -5.6094 -1.7291 25 1 -0.3634 0.4264 0.9351 26 1 -0.3633 0.5966 -0.8367 27 1 -0.3634 -1.0229 -0.0984 28 1 1.8933 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.5991 -0.2669 2.1366 33 1 3.1256 -0.6374 1.2994 34 1 1.5755 -2.3440 3.3307 35 1 1.6487 -3.9108 2.4890 36 1 3.1051 -2.8940 2.6053 37 1 2.1862 -2.3267 -0.8986 38 1 3.4550 -2.8685 0.2260 39 1 1.3695 -10.1295 -1.6575 40 1 0.5029 -7.4363 -2.5714 41 1 1.0499 -4.3542 -2.7630 42 1 -0.0063 -5.3416 -3.9081 43 1 -1.4980 -6.0002 -1.9644 44 1 -0.4421 -5.0135 -0.8188 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345547212.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:22 Heat of formation + Delta-G solvation = -97.081461 kcal Electronic energy + Delta-G solvation = -21581.981061 eV Core-core repulsion = 18499.182046 eV Total energy + Delta-G solvation = -3082.799015 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.91427 -37.83626 -36.33469 -34.68406 -33.43383 -32.79625 -28.73374 -27.33344 -27.24717 -26.54638 -23.36313 -21.56165 -21.34864 -20.53171 -19.29301 -18.83949 -17.03634 -16.59147 -16.09469 -15.51398 -14.86996 -14.71815 -14.36855 -14.20994 -13.85345 -13.40015 -12.88410 -12.62431 -12.58837 -12.33818 -12.12838 -11.83144 -11.61725 -11.44492 -11.31671 -11.23771 -11.09227 -11.00983 -10.93369 -10.54285 -10.53815 -10.33563 -10.30298 -10.24450 -10.05209 -9.49993 -9.46081 -9.05673 -8.51095 -8.42337 -6.17748 -4.24831 3.04528 3.26811 3.30547 3.32614 3.71808 4.34325 4.64302 4.78224 4.85967 4.95180 4.98920 5.14757 5.27445 5.36680 5.51268 5.54041 5.55970 5.70193 5.76291 5.79497 5.82015 5.87659 5.89635 5.91821 5.99840 6.07573 6.10161 6.14282 6.17606 6.23007 6.35786 6.46722 6.52259 6.57754 6.71730 6.96410 7.02827 7.22526 7.58810 7.62961 7.88537 8.14648 8.66532 8.91206 9.39756 10.89372 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.027436 B = 0.004512 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.313091 B = 6203.840347 C = 6468.749941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.103 4.103 3 C -0.146 4.146 4 C -0.108 4.108 5 C -0.080 4.080 6 H 0.082 0.918 7 C -0.155 4.155 8 C -0.115 4.115 9 C 0.450 3.550 10 O -0.515 6.515 11 O -0.355 6.355 12 C 0.248 3.752 13 H 0.052 0.948 14 C -0.519 4.519 15 H 0.069 0.931 16 C 0.064 3.936 17 N -0.886 5.886 18 Si 0.909 3.091 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.116 4.116 23 C -0.194 4.194 24 C -0.210 4.210 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.049 0.951 35 H 0.077 0.923 36 H 0.048 0.952 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.266 0.734 40 H 0.128 0.872 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.026 16.248 2.974 16.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.122 4.122 3 C -0.204 4.204 4 C -0.146 4.146 5 C -0.098 4.098 6 H 0.100 0.900 7 C -0.212 4.212 8 C -0.153 4.153 9 C 0.294 3.706 10 O -0.405 6.405 11 O -0.271 6.271 12 C 0.196 3.804 13 H 0.069 0.931 14 C -0.557 4.557 15 H 0.087 0.913 16 C -0.138 4.138 17 N -0.523 5.523 18 Si 0.736 3.264 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.134 4.134 23 C -0.231 4.231 24 C -0.247 4.247 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.067 0.933 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.076 0.924 40 H 0.146 0.854 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.379 15.889 3.174 16.207 hybrid contribution 0.445 -0.748 -0.419 0.966 sum 0.066 15.141 2.755 15.390 Atomic orbital electron populations 1.21894 0.95279 1.02147 1.01389 1.21220 0.96056 0.95971 0.98924 1.21840 1.00839 0.96200 1.01479 1.21724 1.00879 0.94346 0.97643 1.20999 1.00952 0.93592 0.94292 0.90018 1.21971 1.00780 1.02540 0.95886 1.21524 1.02266 0.90483 1.01025 1.23424 0.79685 0.88909 0.78600 1.90539 1.31142 1.75557 1.43283 1.86494 1.62487 1.28005 1.50112 1.20092 0.91258 0.72862 0.96231 0.93075 1.20925 0.98181 0.91639 1.44923 0.91304 1.24896 0.96129 0.97647 0.95160 1.69972 1.20986 1.14215 1.47116 0.86379 0.81346 0.79130 0.79557 1.19978 1.21057 1.19928 1.23018 0.94601 0.95123 1.00684 1.22791 1.03946 1.01313 0.95097 1.23148 0.95607 1.06640 0.99294 0.92871 0.92982 0.92150 0.90823 0.92787 0.92893 0.92927 0.91696 0.91859 0.93140 0.90442 0.93318 0.88455 0.88518 0.92381 0.85382 0.89835 0.90514 0.90644 0.88744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.83 37.16 0.33 -1.13 16 2 C -0.10 -0.98 2.81 -90.62 -0.25 -1.24 16 3 C -0.15 -1.19 9.19 37.16 0.34 -0.85 16 4 C -0.11 -1.08 4.13 -26.73 -0.11 -1.19 16 5 C -0.08 -1.02 1.92 -90.62 -0.17 -1.19 16 6 H 0.08 1.15 6.25 -51.93 -0.32 0.82 16 7 C -0.15 -2.08 8.86 37.16 0.33 -1.75 16 8 C -0.12 -1.66 5.17 -27.88 -0.14 -1.80 16 9 C 0.45 9.00 6.65 36.01 0.24 9.24 16 10 O -0.51 -11.37 11.03 -18.75 -0.21 -11.58 16 11 O -0.35 -8.25 8.38 -39.25 -0.33 -8.57 16 12 C 0.25 6.55 2.41 -27.88 -0.07 6.49 16 13 H 0.05 1.51 7.16 -51.93 -0.37 1.14 16 14 C -0.52 -14.43 8.90 -34.44 -0.31 -14.74 16 15 H 0.07 1.89 7.81 -52.48 -0.41 1.48 16 16 C 0.06 1.76 5.20 -17.82 -0.09 1.66 16 17 N -0.89 -24.99 11.59 55.43 0.64 -24.35 16 18 Si 0.91 20.96 29.54 -169.99 -5.02 15.94 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 C -0.12 -2.87 5.27 -90.62 -0.48 -3.35 16 23 C -0.19 -4.11 9.80 -26.69 -0.26 -4.37 16 24 C -0.21 -4.60 9.85 -26.69 -0.26 -4.86 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.66 6.72 -51.93 -0.35 0.32 16 28 H 0.07 0.74 6.28 -51.93 -0.33 0.41 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 1.28 6.09 -51.93 -0.32 0.97 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.10 1.25 6.29 -51.93 -0.33 0.93 16 38 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.13 3.47 6.46 -51.93 -0.34 3.14 16 41 H 0.08 1.72 6.91 -51.93 -0.36 1.36 16 42 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 43 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 44 H 0.09 2.12 5.37 -51.93 -0.28 1.84 16 LS Contribution 342.18 15.07 5.16 5.16 Total: -1.00 -29.01 342.18 -8.27 -37.29 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -7.60 Total: 5.21 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -0.91 Total: -19.09 kcal Atomic # 7 Polarization: -24.99 SS G_CDS: 0.64 Total: -24.35 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.54 Total: -20.16 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.01 -8.27 -37.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345547212.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.795 kcal (2) G-P(sol) polarization free energy of solvation -29.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds