Wall clock time and date at job start Mon Mar 30 2020 01:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47431 * 2 1 4 4 C 1.53005 * 109.46931 * 120.00147 * 2 1 3 5 5 C 1.52999 * 109.47157 * 65.45478 * 4 2 1 6 6 H 1.09003 * 109.47264 * 306.06728 * 5 4 2 7 7 C 1.52998 * 109.46963 * 186.06468 * 5 4 2 8 8 C 1.52998 * 109.46811 * 66.06705 * 5 4 2 9 9 C 1.50708 * 109.46960 * 184.99829 * 8 5 4 10 10 O 1.20825 * 119.99629 * 0.02562 * 9 8 5 11 11 O 1.34227 * 120.00254 * 179.97438 * 9 8 5 12 12 C 1.45200 * 116.99992 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.46818 * 330.00183 * 12 11 9 14 14 C 1.50699 * 109.47082 * 210.00455 * 12 11 9 15 15 H 1.08007 * 119.99778 * 0.02562 * 14 12 11 16 16 C 1.37874 * 120.00197 * 179.97438 * 14 12 11 17 17 N 1.31509 * 119.99726 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 120.00152 * 179.97438 * 16 14 12 19 19 H 1.48509 * 109.46656 * 60.00550 * 18 16 14 20 20 H 1.48504 * 109.47039 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47391 * 300.00621 * 18 16 14 22 22 C 1.52998 * 109.46976 * 90.00444 * 12 11 9 23 23 C 1.52996 * 117.49949 * 8.74669 * 22 12 11 24 24 C 1.53002 * 117.49959 * 300.08470 * 22 12 11 25 25 H 1.09004 * 109.47235 * 294.51139 * 1 2 3 26 26 H 1.08998 * 109.47199 * 54.50799 * 1 2 3 27 27 H 1.08994 * 109.47655 * 174.50639 * 1 2 3 28 28 H 1.08996 * 109.47358 * 240.00013 * 2 1 3 29 29 H 1.08997 * 109.47485 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47442 * 300.00409 * 3 2 1 31 31 H 1.09009 * 109.46714 * 59.99873 * 3 2 1 32 32 H 1.09003 * 109.47082 * 305.44978 * 4 2 1 33 33 H 1.09002 * 109.46543 * 185.45759 * 4 2 1 34 34 H 1.09002 * 109.46731 * 54.27458 * 7 5 4 35 35 H 1.09003 * 109.46620 * 174.26813 * 7 5 4 36 36 H 1.08992 * 109.47259 * 294.27309 * 7 5 4 37 37 H 1.08998 * 109.47380 * 304.99750 * 8 5 4 38 38 H 1.08998 * 109.47211 * 65.00295 * 8 5 4 39 39 H 0.97002 * 119.99812 * 179.97438 * 17 16 14 40 40 H 1.09002 * 115.54779 * 154.41745 * 22 12 11 41 41 H 1.09000 * 117.50014 * 359.97438 * 23 22 12 42 42 H 1.09000 * 117.49697 * 145.02490 * 23 22 12 43 43 H 1.08997 * 117.49918 * 214.98292 * 24 22 12 44 44 H 1.08999 * 117.49518 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6450 -2.1979 1.1826 6 1 0.5696 -2.2796 1.0241 7 6 2.0207 -2.8862 2.4964 8 6 2.3838 -2.8716 0.0245 9 6 1.9038 -4.2930 -0.1186 10 8 1.0572 -4.7228 0.6288 11 8 2.4159 -5.0811 -1.0768 12 6 1.9061 -6.4384 -1.1563 13 1 1.6046 -6.7719 -0.1634 14 6 2.9832 -7.3493 -1.6866 15 1 3.9540 -6.9482 -1.9383 16 6 2.7298 -8.6947 -1.8495 17 7 1.5479 -9.1830 -1.5425 18 14 4.0647 -9.8237 -2.5074 19 1 5.2371 -9.7871 -1.5966 20 1 3.5434 -11.2118 -2.5886 21 1 4.4748 -9.3694 -3.8605 22 6 0.6988 -6.4755 -2.0954 23 6 0.3920 -5.2120 -2.9018 24 6 -0.5081 -5.6094 -1.7291 25 1 -0.3634 0.4264 0.9351 26 1 -0.3633 0.5966 -0.8367 27 1 -0.3634 -1.0229 -0.0984 28 1 1.8933 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.5991 -0.2669 2.1366 33 1 3.1256 -0.6374 1.2994 34 1 1.5755 -2.3440 3.3307 35 1 1.6487 -3.9108 2.4890 36 1 3.1051 -2.8940 2.6053 37 1 2.1862 -2.3267 -0.8986 38 1 3.4550 -2.8685 0.2260 39 1 1.3695 -10.1295 -1.6575 40 1 0.5029 -7.4363 -2.5714 41 1 1.0499 -4.3542 -2.7630 42 1 -0.0063 -5.3416 -3.9081 43 1 -1.4980 -6.0002 -1.9644 44 1 -0.4421 -5.0135 -0.8188 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345547212.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:21 Heat of formation + Delta-G solvation = -110.481455 kcal Electronic energy + Delta-G solvation = -21582.562128 eV Core-core repulsion = 18499.182046 eV Total energy + Delta-G solvation = -3083.380083 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.56850 -39.04283 -37.86763 -36.45835 -34.87120 -34.43565 -30.39027 -28.93690 -27.95958 -27.43223 -25.36262 -23.23748 -22.84378 -21.60915 -20.84291 -20.14906 -18.86388 -18.35872 -17.71633 -17.22554 -16.45644 -15.94102 -15.71151 -15.41578 -15.07586 -14.67299 -14.35179 -14.01162 -13.79188 -13.57145 -13.28479 -13.18666 -12.99926 -12.88527 -12.77654 -12.70586 -12.39542 -12.30892 -12.21141 -12.18629 -11.98558 -11.91969 -11.44309 -11.33757 -11.26653 -11.20948 -11.11400 -10.85786 -10.45989 -10.41670 -8.26197 -6.42728 1.41146 1.43950 1.45595 1.52910 2.09793 2.44554 3.01621 3.15476 3.71915 3.84713 3.93021 4.07189 4.15494 4.20936 4.26982 4.29345 4.32044 4.48645 4.63996 4.70008 4.71253 4.75633 4.85792 4.88815 4.92109 4.98922 4.99321 5.05908 5.12736 5.17347 5.22006 5.25879 5.29298 5.30644 5.43167 5.49190 5.54846 5.57396 5.59883 5.60737 5.95877 6.18157 6.63149 7.07260 7.29296 8.80870 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.027436 B = 0.004512 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.313091 B = 6203.840347 C = 6468.749941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.104 4.104 3 C -0.143 4.143 4 C -0.099 4.099 5 C -0.075 4.075 6 H 0.066 0.934 7 C -0.154 4.154 8 C -0.106 4.106 9 C 0.442 3.558 10 O -0.540 6.540 11 O -0.363 6.363 12 C 0.256 3.744 13 H 0.004 0.996 14 C -0.546 4.546 15 H 0.066 0.934 16 C 0.019 3.981 17 N -0.913 5.913 18 Si 0.978 3.022 19 H -0.268 1.268 20 H -0.279 1.279 21 H -0.264 1.264 22 C -0.148 4.148 23 C -0.166 4.166 24 C -0.200 4.200 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.041 0.959 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.038 0.962 36 H 0.059 0.941 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.269 0.731 40 H 0.102 0.898 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.091 0.909 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.946 18.187 2.240 18.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.122 4.122 3 C -0.201 4.201 4 C -0.137 4.137 5 C -0.093 4.093 6 H 0.084 0.916 7 C -0.211 4.211 8 C -0.143 4.143 9 C 0.287 3.713 10 O -0.431 6.431 11 O -0.280 6.280 12 C 0.202 3.798 13 H 0.022 0.978 14 C -0.584 4.584 15 H 0.084 0.916 16 C -0.181 4.181 17 N -0.551 5.551 18 Si 0.801 3.199 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.189 1.189 22 C -0.167 4.167 23 C -0.202 4.202 24 C -0.236 4.236 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.078 0.922 40 H 0.120 0.880 41 H 0.109 0.891 42 H 0.120 0.880 43 H 0.110 0.890 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.589 17.855 2.446 18.031 hybrid contribution 0.091 -1.317 -0.111 1.325 sum 0.680 16.537 2.335 16.715 Atomic orbital electron populations 1.21897 0.95710 1.01143 1.02008 1.21225 0.95698 0.96912 0.98378 1.21806 1.01222 0.95047 1.01974 1.21663 1.01780 0.91801 0.98424 1.20983 0.99847 0.95433 0.93066 0.91581 1.21938 1.01450 1.00520 0.97168 1.21715 1.03358 0.86401 1.02838 1.24603 0.79073 0.90382 0.77250 1.90535 1.32340 1.76371 1.43850 1.86481 1.63026 1.26894 1.51590 1.19644 0.91744 0.74402 0.93978 0.97832 1.21235 0.98569 0.92783 1.45765 0.91570 1.25790 0.98394 0.98958 0.94980 1.70105 1.22852 1.14577 1.47566 0.85318 0.78397 0.77002 0.79204 1.19335 1.20374 1.18872 1.22723 0.95702 0.95597 1.02652 1.22868 1.02556 0.99007 0.95803 1.23125 0.95546 1.05348 0.99623 0.92309 0.92355 0.93955 0.91226 0.92155 0.92529 0.92379 0.90682 0.90519 0.91375 0.94327 0.92242 0.86327 0.86545 0.92219 0.88014 0.89051 0.88030 0.89046 0.89538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 8.83 71.98 0.64 -2.02 16 2 C -0.10 -1.70 2.81 -10.79 -0.03 -1.73 16 3 C -0.14 -1.89 9.19 71.98 0.66 -1.23 16 4 C -0.10 -1.70 4.13 30.60 0.13 -1.58 16 5 C -0.07 -1.81 1.92 -10.79 -0.02 -1.83 16 6 H 0.07 1.83 6.25 -2.39 -0.01 1.81 16 7 C -0.15 -4.03 8.86 71.98 0.64 -3.39 16 8 C -0.11 -2.90 5.17 29.85 0.15 -2.75 16 9 C 0.44 17.91 6.65 71.24 0.47 18.38 16 10 O -0.54 -24.85 11.03 21.97 0.24 -24.61 16 11 O -0.36 -17.21 8.38 -51.38 -0.43 -17.64 16 12 C 0.26 14.05 2.41 29.85 0.07 14.12 16 13 H 0.00 0.25 7.16 -2.39 -0.02 0.23 16 14 C -0.55 -31.24 8.90 25.60 0.23 -31.01 16 15 H 0.07 3.70 7.81 -2.91 -0.02 3.68 16 16 C 0.02 1.05 5.20 84.65 0.44 1.49 16 17 N -0.91 -53.10 11.59 21.45 0.25 -52.85 16 18 Si 0.98 43.20 29.54 68.60 2.03 45.23 16 19 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 20 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 21 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 22 C -0.15 -7.53 5.27 -10.79 -0.06 -7.59 16 23 C -0.17 -6.82 9.80 30.62 0.30 -6.52 16 24 C -0.20 -8.76 9.85 30.62 0.30 -8.46 16 25 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.04 0.89 6.72 -2.39 -0.02 0.88 16 28 H 0.07 1.20 6.28 -2.39 -0.01 1.19 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.04 1.31 6.09 -2.39 -0.01 1.30 16 36 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.12 2.78 6.29 -2.39 -0.02 2.77 16 38 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 39 H 0.27 14.69 8.31 -92.71 -0.77 13.91 16 40 H 0.10 5.71 6.46 -2.39 -0.02 5.70 16 41 H 0.09 3.61 6.91 -2.39 -0.02 3.60 16 42 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 43 H 0.09 3.67 8.14 -2.39 -0.02 3.65 16 44 H 0.09 3.95 5.37 -2.39 -0.01 3.93 16 Total: -1.00 -65.30 342.18 6.97 -58.33 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: 0.96 Total: 25.66 kcal Atomic # 6 Polarization: -38.04 SS G_CDS: 3.92 Total: -34.12 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: 0.25 Total: -52.85 kcal Atomic # 8 Polarization: -42.06 SS G_CDS: -0.19 Total: -42.25 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -65.30 6.97 -58.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345547212.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.152 kcal (2) G-P(sol) polarization free energy of solvation -65.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds