Wall clock time and date at job start Mon Mar 30 2020 01:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47067 * 2 1 4 4 C 1.52996 * 109.47387 * 120.00674 * 2 1 3 5 5 C 1.52995 * 109.47392 * 65.85150 * 4 2 1 6 6 H 1.08999 * 109.47467 * 305.59863 * 5 4 2 7 7 C 1.53008 * 109.46886 * 65.59364 * 5 4 2 8 8 C 1.53004 * 109.47306 * 185.59137 * 5 4 2 9 9 C 1.50693 * 109.46995 * 175.00411 * 8 5 4 10 10 O 1.20830 * 120.00390 * 359.97438 * 9 8 5 11 11 O 1.34234 * 120.00021 * 179.97438 * 9 8 5 12 12 C 1.45196 * 117.00509 * 179.97438 * 11 9 8 13 13 H 1.09007 * 109.46907 * 30.00433 * 12 11 9 14 14 C 1.50691 * 109.47374 * 150.00090 * 12 11 9 15 15 H 1.08005 * 119.99915 * 0.02562 * 14 12 11 16 16 C 1.37880 * 120.00476 * 180.02562 * 14 12 11 17 17 N 1.31509 * 119.99375 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 120.00310 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47259 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46632 * 120.00062 * 18 16 14 21 21 H 1.48503 * 109.47563 * 240.00077 * 18 16 14 22 22 C 1.52998 * 109.47140 * 270.00436 * 12 11 9 23 23 C 1.53007 * 117.49623 * 128.74679 * 22 12 11 24 24 C 1.53001 * 117.49936 * 60.08547 * 22 12 11 25 25 H 1.09003 * 109.46651 * 299.99603 * 1 2 3 26 26 H 1.09002 * 109.47381 * 59.99756 * 1 2 3 27 27 H 1.08994 * 109.47022 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46651 * 240.00397 * 2 1 3 29 29 H 1.08995 * 109.47862 * 295.09484 * 3 2 1 30 30 H 1.09004 * 109.47445 * 55.09373 * 3 2 1 31 31 H 1.09004 * 109.47315 * 175.09324 * 3 2 1 32 32 H 1.09004 * 109.46583 * 305.85449 * 4 2 1 33 33 H 1.09004 * 109.47214 * 185.85767 * 4 2 1 34 34 H 1.08998 * 109.47017 * 294.74499 * 7 5 4 35 35 H 1.09000 * 109.47070 * 54.74208 * 7 5 4 36 36 H 1.08995 * 109.46832 * 174.74049 * 7 5 4 37 37 H 1.08999 * 109.46842 * 295.00419 * 8 5 4 38 38 H 1.08995 * 109.46977 * 55.00200 * 8 5 4 39 39 H 0.97006 * 119.99878 * 179.97438 * 17 16 14 40 40 H 1.08997 * 115.55229 * 274.41050 * 22 12 11 41 41 H 1.08996 * 117.50217 * 359.97438 * 23 22 12 42 42 H 1.08998 * 117.49722 * 145.02383 * 23 22 12 43 43 H 1.08999 * 117.49755 * 214.97484 * 24 22 12 44 44 H 1.08997 * 117.49656 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 1.6538 -2.2000 1.1776 6 1 0.5782 -2.2876 1.0239 7 6 2.3911 -2.8640 0.0130 8 6 2.0399 -2.8919 2.4865 9 6 1.5500 -4.3168 2.4650 10 8 0.9529 -4.7359 1.5018 11 8 1.7771 -5.1206 3.5158 12 6 1.2762 -6.4804 3.4261 13 1 1.2697 -6.7972 2.3831 14 6 2.1668 -7.3975 4.2239 15 1 3.0235 -6.9982 4.7466 16 6 1.8882 -8.7464 4.2868 17 7 0.8453 -9.2327 3.6499 18 14 2.9926 -9.8833 5.2751 19 1 4.0897 -9.0949 5.8917 20 1 2.1969 -10.5419 6.3421 21 1 3.5690 -10.9169 4.3780 22 6 -0.1468 -6.5377 3.9854 23 6 -1.2223 -7.1907 3.1147 24 6 -1.2088 -5.6718 3.3048 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.7502 1.9304 -0.9306 30 1 1.6067 1.9811 0.8428 31 1 3.1265 1.4438 0.0879 32 1 1.5936 -0.2717 2.1360 33 1 3.1250 -0.6314 1.3031 34 1 2.0465 -2.4342 -0.9275 35 1 3.4629 -2.6957 0.1182 36 1 2.1893 -3.9351 0.0186 37 1 3.1243 -2.8821 2.5965 38 1 1.5850 -2.3639 3.3245 39 1 0.6495 -10.1817 3.6938 40 1 -0.2228 -6.6721 5.0644 41 1 -0.9162 -7.5790 2.1434 42 1 -2.0060 -7.7541 3.6210 43 1 -1.9836 -5.2368 3.9360 44 1 -0.8936 -5.0609 2.4589 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345547273.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:24 Heat of formation + Delta-G solvation = -98.255943 kcal Electronic energy + Delta-G solvation = -21313.403262 eV Core-core repulsion = 18230.553318 eV Total energy + Delta-G solvation = -3082.849945 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.78753 -37.78145 -36.29841 -34.84548 -33.43608 -32.62524 -28.62130 -27.33485 -27.18785 -26.58778 -23.31068 -21.74134 -21.21043 -20.00683 -19.38126 -19.06936 -17.06140 -16.43582 -15.94667 -15.38812 -15.04973 -14.60275 -14.51970 -13.89343 -13.80261 -13.63284 -12.99239 -12.70396 -12.59238 -12.36028 -12.04930 -11.76055 -11.53128 -11.46794 -11.23197 -11.20272 -11.04201 -10.94600 -10.90910 -10.54590 -10.39981 -10.35992 -10.29710 -10.23705 -9.79249 -9.52126 -9.23605 -8.98951 -8.61116 -8.40435 -6.13339 -4.20880 3.08135 3.24965 3.32221 3.36501 3.71841 4.36115 4.68508 4.78672 4.82746 5.05275 5.11064 5.17059 5.20039 5.40237 5.49589 5.56430 5.57848 5.67490 5.74817 5.82312 5.85172 5.88463 5.89735 5.98518 6.04024 6.05360 6.17626 6.19534 6.22189 6.31700 6.43239 6.53319 6.56774 6.64414 6.75768 7.03051 7.19363 7.31967 7.45670 7.67108 7.89854 8.16867 8.70398 8.95006 9.43852 10.93420 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.031711 B = 0.004118 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.755569 B = 6797.592408 C = 7289.726715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.099 4.099 3 C -0.147 4.147 4 C -0.110 4.110 5 C -0.080 4.080 6 H 0.081 0.919 7 C -0.154 4.154 8 C -0.114 4.114 9 C 0.453 3.547 10 O -0.518 6.518 11 O -0.355 6.355 12 C 0.248 3.752 13 H 0.048 0.952 14 C -0.527 4.527 15 H 0.068 0.932 16 C 0.068 3.932 17 N -0.873 5.873 18 Si 0.906 3.094 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.114 4.114 23 C -0.123 4.123 24 C -0.229 4.229 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.047 0.953 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.263 0.737 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.623 15.959 -4.776 16.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 C -0.204 4.204 4 C -0.147 4.147 5 C -0.099 4.099 6 H 0.100 0.900 7 C -0.211 4.211 8 C -0.152 4.152 9 C 0.296 3.704 10 O -0.408 6.408 11 O -0.271 6.271 12 C 0.196 3.804 13 H 0.065 0.935 14 C -0.565 4.565 15 H 0.087 0.913 16 C -0.136 4.136 17 N -0.509 5.509 18 Si 0.733 3.267 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.133 4.133 23 C -0.161 4.161 24 C -0.266 4.266 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.073 0.927 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.344 15.605 -5.066 16.411 hybrid contribution 0.335 -0.854 0.574 1.082 sum 0.679 14.751 -4.492 15.435 Atomic orbital electron populations 1.21908 0.95344 1.02221 1.01312 1.21147 0.95941 0.95758 0.98858 1.21847 1.00841 0.96279 1.01439 1.21714 1.00851 0.94420 0.97733 1.21003 1.01697 0.93528 0.93623 0.90026 1.21999 0.99090 1.02797 0.97242 1.21437 1.03265 0.90480 0.99990 1.23375 0.76733 0.88911 0.81338 1.90534 1.39172 1.76370 1.34770 1.86485 1.71927 1.27273 1.41434 1.20168 0.89247 0.72827 0.98180 0.93462 1.20964 1.11699 0.91354 1.32461 0.91332 1.24885 0.95469 0.97641 0.95610 1.70060 1.26111 1.13639 1.41095 0.86321 0.80401 0.80338 0.79662 1.19544 1.20840 1.20842 1.22590 0.91562 1.01460 0.97687 1.22354 1.00396 0.91783 1.01535 1.23285 1.03647 0.95348 1.04359 0.92840 0.93123 0.92036 0.90872 0.93008 0.92850 0.92817 0.91914 0.91862 0.92916 0.93419 0.90609 0.88539 0.88571 0.92737 0.89461 0.89377 0.90876 0.91159 0.88742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.97 37.16 0.33 -1.08 16 2 C -0.10 -0.91 2.80 -90.62 -0.25 -1.17 16 3 C -0.15 -1.16 9.19 37.16 0.34 -0.82 16 4 C -0.11 -1.09 4.13 -26.74 -0.11 -1.20 16 5 C -0.08 -1.02 1.92 -90.62 -0.17 -1.19 16 6 H 0.08 1.14 6.17 -51.93 -0.32 0.82 16 7 C -0.15 -2.06 8.63 37.16 0.32 -1.74 16 8 C -0.11 -1.64 5.29 -27.88 -0.15 -1.78 16 9 C 0.45 9.10 6.86 36.00 0.25 9.35 16 10 O -0.52 -11.41 11.04 -18.75 -0.21 -11.62 16 11 O -0.36 -8.37 9.84 -39.27 -0.39 -8.76 16 12 C 0.25 6.56 2.25 -27.89 -0.06 6.49 16 13 H 0.05 1.38 6.91 -51.93 -0.36 1.02 16 14 C -0.53 -14.71 8.87 -34.44 -0.31 -15.01 16 15 H 0.07 1.90 7.81 -52.48 -0.41 1.49 16 16 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 17 N -0.87 -24.32 11.43 55.43 0.63 -23.69 16 18 Si 0.91 21.01 29.54 -169.99 -5.02 15.99 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C -0.11 -2.82 4.47 -90.62 -0.41 -3.23 16 23 C -0.12 -2.88 9.04 -26.69 -0.24 -3.12 16 24 C -0.23 -4.99 9.80 -26.69 -0.26 -5.25 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.65 6.48 -51.93 -0.34 0.31 16 28 H 0.07 0.71 6.45 -51.93 -0.33 0.37 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.63 6.71 -51.93 -0.35 0.28 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.08 1.26 5.88 -51.93 -0.31 0.96 16 37 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 40 H 0.09 2.23 8.11 -51.93 -0.42 1.80 16 41 H 0.09 2.19 8.05 -51.93 -0.42 1.78 16 42 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 43 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 44 H 0.09 2.11 5.37 -51.93 -0.28 1.83 16 LS Contribution 344.67 15.07 5.19 5.19 Total: -1.00 -29.02 344.67 -8.34 -37.36 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -7.74 Total: 3.53 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: -0.81 Total: -18.01 kcal Atomic # 7 Polarization: -24.32 SS G_CDS: 0.63 Total: -23.69 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.59 Total: -20.38 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.02 -8.34 -37.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345547273.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.897 kcal (2) G-P(sol) polarization free energy of solvation -29.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds