Wall clock time and date at job start Mon Mar 30 2020 01:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47067 * 2 1 4 4 C 1.52996 * 109.47387 * 120.00674 * 2 1 3 5 5 C 1.52995 * 109.47392 * 65.85150 * 4 2 1 6 6 H 1.08999 * 109.47467 * 305.59863 * 5 4 2 7 7 C 1.53008 * 109.46886 * 65.59364 * 5 4 2 8 8 C 1.53004 * 109.47306 * 185.59137 * 5 4 2 9 9 C 1.50693 * 109.46995 * 175.00411 * 8 5 4 10 10 O 1.20830 * 120.00390 * 359.97438 * 9 8 5 11 11 O 1.34234 * 120.00021 * 179.97438 * 9 8 5 12 12 C 1.45196 * 117.00509 * 179.97438 * 11 9 8 13 13 H 1.09007 * 109.46907 * 30.00433 * 12 11 9 14 14 C 1.50691 * 109.47374 * 150.00090 * 12 11 9 15 15 H 1.08005 * 119.99915 * 0.02562 * 14 12 11 16 16 C 1.37880 * 120.00476 * 180.02562 * 14 12 11 17 17 N 1.31509 * 119.99375 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 120.00310 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47259 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46632 * 120.00062 * 18 16 14 21 21 H 1.48503 * 109.47563 * 240.00077 * 18 16 14 22 22 C 1.52998 * 109.47140 * 270.00436 * 12 11 9 23 23 C 1.53007 * 117.49623 * 128.74679 * 22 12 11 24 24 C 1.53001 * 117.49936 * 60.08547 * 22 12 11 25 25 H 1.09003 * 109.46651 * 299.99603 * 1 2 3 26 26 H 1.09002 * 109.47381 * 59.99756 * 1 2 3 27 27 H 1.08994 * 109.47022 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46651 * 240.00397 * 2 1 3 29 29 H 1.08995 * 109.47862 * 295.09484 * 3 2 1 30 30 H 1.09004 * 109.47445 * 55.09373 * 3 2 1 31 31 H 1.09004 * 109.47315 * 175.09324 * 3 2 1 32 32 H 1.09004 * 109.46583 * 305.85449 * 4 2 1 33 33 H 1.09004 * 109.47214 * 185.85767 * 4 2 1 34 34 H 1.08998 * 109.47017 * 294.74499 * 7 5 4 35 35 H 1.09000 * 109.47070 * 54.74208 * 7 5 4 36 36 H 1.08995 * 109.46832 * 174.74049 * 7 5 4 37 37 H 1.08999 * 109.46842 * 295.00419 * 8 5 4 38 38 H 1.08995 * 109.46977 * 55.00200 * 8 5 4 39 39 H 0.97006 * 119.99878 * 179.97438 * 17 16 14 40 40 H 1.08997 * 115.55229 * 274.41050 * 22 12 11 41 41 H 1.08996 * 117.50217 * 359.97438 * 23 22 12 42 42 H 1.08998 * 117.49722 * 145.02383 * 23 22 12 43 43 H 1.08999 * 117.49755 * 214.97484 * 24 22 12 44 44 H 1.08997 * 117.49656 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 1.6538 -2.2000 1.1776 6 1 0.5782 -2.2876 1.0239 7 6 2.3911 -2.8640 0.0130 8 6 2.0399 -2.8919 2.4865 9 6 1.5500 -4.3168 2.4650 10 8 0.9529 -4.7359 1.5018 11 8 1.7771 -5.1206 3.5158 12 6 1.2762 -6.4804 3.4261 13 1 1.2697 -6.7972 2.3831 14 6 2.1668 -7.3975 4.2239 15 1 3.0235 -6.9982 4.7466 16 6 1.8882 -8.7464 4.2868 17 7 0.8453 -9.2327 3.6499 18 14 2.9926 -9.8833 5.2751 19 1 4.0897 -9.0949 5.8917 20 1 2.1969 -10.5419 6.3421 21 1 3.5690 -10.9169 4.3780 22 6 -0.1468 -6.5377 3.9854 23 6 -1.2223 -7.1907 3.1147 24 6 -1.2088 -5.6718 3.3048 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.7502 1.9304 -0.9306 30 1 1.6067 1.9811 0.8428 31 1 3.1265 1.4438 0.0879 32 1 1.5936 -0.2717 2.1360 33 1 3.1250 -0.6314 1.3031 34 1 2.0465 -2.4342 -0.9275 35 1 3.4629 -2.6957 0.1182 36 1 2.1893 -3.9351 0.0186 37 1 3.1243 -2.8821 2.5965 38 1 1.5850 -2.3639 3.3245 39 1 0.6495 -10.1817 3.6938 40 1 -0.2228 -6.6721 5.0644 41 1 -0.9162 -7.5790 2.1434 42 1 -2.0060 -7.7541 3.6210 43 1 -1.9836 -5.2368 3.9360 44 1 -0.8936 -5.0609 2.4589 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345547273.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:23 Heat of formation + Delta-G solvation = -111.526247 kcal Electronic energy + Delta-G solvation = -21313.978706 eV Core-core repulsion = 18230.553318 eV Total energy + Delta-G solvation = -3083.425388 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.44173 -38.95663 -37.89948 -36.63645 -34.70803 -34.45276 -30.29247 -28.83735 -27.94992 -27.48637 -25.29129 -23.15355 -22.96119 -21.45607 -20.84133 -20.28485 -18.89817 -18.26516 -17.43183 -17.03300 -16.46954 -16.11598 -15.81843 -15.46506 -14.85585 -14.67960 -14.51763 -14.23219 -13.71380 -13.52941 -13.34601 -13.05460 -12.95227 -12.93403 -12.79631 -12.57903 -12.29448 -12.25968 -12.17438 -12.14937 -11.86060 -11.75410 -11.54448 -11.33858 -11.25147 -11.16866 -10.97353 -10.86016 -10.58560 -10.41529 -8.21693 -6.38454 1.41702 1.42041 1.47808 1.55403 2.10518 2.45060 3.05666 3.23728 3.74936 3.88030 3.95709 4.09947 4.16845 4.21913 4.30664 4.36003 4.45503 4.51629 4.63727 4.69680 4.73434 4.77759 4.80600 4.85301 4.89705 5.00894 5.07170 5.09436 5.11174 5.16793 5.21684 5.27389 5.35059 5.35989 5.41150 5.48028 5.51422 5.59707 5.61378 5.65713 5.89928 6.22870 6.66246 7.10554 7.32822 8.84677 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.031711 B = 0.004118 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.755569 B = 6797.592408 C = 7289.726715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.099 4.099 3 C -0.144 4.144 4 C -0.102 4.102 5 C -0.075 4.075 6 H 0.066 0.934 7 C -0.152 4.152 8 C -0.105 4.105 9 C 0.443 3.557 10 O -0.541 6.541 11 O -0.368 6.368 12 C 0.254 3.746 13 H 0.006 0.994 14 C -0.556 4.556 15 H 0.062 0.938 16 C 0.024 3.976 17 N -0.895 5.895 18 Si 0.974 3.026 19 H -0.266 1.266 20 H -0.274 1.274 21 H -0.277 1.277 22 C -0.131 4.131 23 C -0.123 4.123 24 C -0.198 4.198 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.044 0.956 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.036 0.964 37 H 0.116 0.884 38 H 0.121 0.879 39 H 0.266 0.734 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.064 17.633 -3.985 18.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 C -0.201 4.201 4 C -0.139 4.139 5 C -0.093 4.093 6 H 0.085 0.915 7 C -0.209 4.209 8 C -0.142 4.142 9 C 0.289 3.711 10 O -0.433 6.433 11 O -0.285 6.285 12 C 0.201 3.799 13 H 0.023 0.977 14 C -0.594 4.594 15 H 0.080 0.920 16 C -0.178 4.178 17 N -0.531 5.531 18 Si 0.798 3.202 19 H -0.190 1.190 20 H -0.199 1.199 21 H -0.203 1.203 22 C -0.151 4.151 23 C -0.161 4.161 24 C -0.235 4.235 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.134 0.866 38 H 0.139 0.861 39 H 0.075 0.925 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.106 0.894 43 H 0.121 0.879 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.781 17.302 -4.287 17.843 hybrid contribution 0.187 -1.345 0.238 1.379 sum 0.968 15.957 -4.048 16.491 Atomic orbital electron populations 1.21908 0.95657 1.01286 1.01962 1.21144 0.95683 0.96648 0.98232 1.21812 1.01179 0.95126 1.01963 1.21666 1.01716 0.91937 0.98617 1.20985 1.00708 0.95331 0.92290 0.91518 1.21952 1.00206 1.00300 0.98417 1.21633 1.04389 0.86331 1.01880 1.24579 0.76074 0.90434 0.80040 1.90528 1.40257 1.77153 1.35341 1.86478 1.72461 1.26380 1.43135 1.19773 0.90336 0.74290 0.95475 0.97658 1.21234 1.12272 0.92547 1.33298 0.91958 1.25728 0.96820 0.98858 0.96390 1.70171 1.27236 1.14087 1.41629 0.85267 0.78599 0.78072 0.78231 1.19035 1.19921 1.20308 1.22403 0.91410 1.04094 0.97148 1.22267 1.00289 0.93321 1.00193 1.23272 1.02509 0.94158 1.03572 0.92291 0.92437 0.93723 0.91426 0.92521 0.92366 0.92255 0.90785 0.90639 0.91775 0.91990 0.94528 0.86596 0.86111 0.92452 0.90370 0.91816 0.89386 0.87915 0.89455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 8.97 71.98 0.65 -1.96 16 2 C -0.10 -1.61 2.80 -10.80 -0.03 -1.64 16 3 C -0.14 -1.88 9.19 71.98 0.66 -1.22 16 4 C -0.10 -1.76 4.13 30.59 0.13 -1.63 16 5 C -0.07 -1.80 1.92 -10.79 -0.02 -1.82 16 6 H 0.07 1.83 6.17 -2.39 -0.01 1.82 16 7 C -0.15 -4.00 8.63 71.98 0.62 -3.38 16 8 C -0.11 -2.86 5.29 29.85 0.16 -2.70 16 9 C 0.44 18.06 6.86 71.23 0.49 18.54 16 10 O -0.54 -24.77 11.04 21.95 0.24 -24.52 16 11 O -0.37 -17.74 9.84 -51.45 -0.51 -18.24 16 12 C 0.25 13.93 2.25 29.84 0.07 14.00 16 13 H 0.01 0.35 6.91 -2.38 -0.02 0.33 16 14 C -0.56 -31.86 8.87 25.60 0.23 -31.63 16 15 H 0.06 3.54 7.81 -2.91 -0.02 3.52 16 16 C 0.02 1.32 5.30 84.66 0.45 1.77 16 17 N -0.90 -50.79 11.43 21.45 0.25 -50.55 16 18 Si 0.97 43.26 29.54 68.60 2.03 45.28 16 19 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 20 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 22 C -0.13 -6.62 4.47 -10.79 -0.05 -6.67 16 23 C -0.12 -5.84 9.04 30.62 0.28 -5.56 16 24 C -0.20 -8.53 9.80 30.62 0.30 -8.23 16 25 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.04 0.91 6.48 -2.39 -0.02 0.90 16 28 H 0.07 1.18 6.45 -2.39 -0.02 1.16 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.06 1.51 6.71 -2.39 -0.02 1.49 16 35 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.04 1.25 5.88 -2.39 -0.01 1.24 16 37 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 38 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 39 H 0.27 14.22 8.31 -92.70 -0.77 13.45 16 40 H 0.08 4.04 8.11 -2.39 -0.02 4.02 16 41 H 0.06 3.30 8.05 -2.39 -0.02 3.29 16 42 H 0.09 3.84 8.14 -2.39 -0.02 3.82 16 43 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 44 H 0.09 3.91 5.37 -2.39 -0.01 3.90 16 Total: -1.00 -64.54 344.67 6.88 -57.66 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 0.95 Total: 22.49 kcal Atomic # 6 Polarization: -36.04 SS G_CDS: 3.92 Total: -32.12 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: 0.25 Total: -50.55 kcal Atomic # 8 Polarization: -42.50 SS G_CDS: -0.26 Total: -42.77 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -64.54 6.88 -57.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345547273.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.865 kcal (2) G-P(sol) polarization free energy of solvation -64.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds