Wall clock time and date at job start Mon Mar 30 2020 00:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47487 * 2 1 4 4 C 1.53004 * 109.47133 * 239.99834 * 2 1 3 5 5 C 1.53001 * 109.47225 * 119.99905 * 2 1 3 6 6 C 1.53000 * 109.47000 * 60.00023 * 5 2 1 7 7 C 1.53001 * 109.47368 * 179.97438 * 6 5 2 8 8 C 1.50697 * 109.47051 * 179.97438 * 7 6 5 9 9 O 1.20826 * 120.00099 * 359.97438 * 8 7 6 10 10 O 1.34237 * 119.99854 * 180.02562 * 8 7 6 11 11 C 1.45200 * 116.99983 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.46801 * 330.00444 * 11 10 8 13 13 C 1.50696 * 109.46946 * 209.99989 * 11 10 8 14 14 H 1.07999 * 120.00202 * 0.02562 * 13 11 10 15 15 C 1.37884 * 119.99746 * 180.02562 * 13 11 10 16 16 N 1.31514 * 119.99573 * 0.27650 * 15 13 11 17 17 Si 1.86800 * 119.99781 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46758 * 89.99934 * 17 15 13 19 19 H 1.48499 * 109.47026 * 209.99782 * 17 15 13 20 20 H 1.48496 * 109.47474 * 329.99818 * 17 15 13 21 21 C 1.53008 * 109.46596 * 90.00143 * 11 10 8 22 22 C 1.52999 * 117.49893 * 8.74806 * 21 11 10 23 23 C 1.52998 * 117.49827 * 300.08660 * 21 11 10 24 24 H 1.09002 * 109.46729 * 300.00453 * 1 2 3 25 25 H 1.09000 * 109.47271 * 59.99604 * 1 2 3 26 26 H 1.08995 * 109.47268 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47529 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47189 * 300.00446 * 3 2 1 29 29 H 1.09000 * 109.47030 * 59.99422 * 3 2 1 30 30 H 1.08991 * 109.47326 * 300.00300 * 4 2 1 31 31 H 1.09000 * 109.46583 * 60.00141 * 4 2 1 32 32 H 1.08994 * 109.47233 * 179.97438 * 4 2 1 33 33 H 1.08996 * 109.47080 * 299.99916 * 5 2 1 34 34 H 1.09004 * 109.47178 * 179.97438 * 5 2 1 35 35 H 1.09002 * 109.46958 * 59.99772 * 6 5 2 36 36 H 1.09004 * 109.46970 * 299.99901 * 6 5 2 37 37 H 1.09000 * 109.46480 * 60.00129 * 7 6 5 38 38 H 1.08994 * 109.46956 * 300.00090 * 7 6 5 39 39 H 0.97001 * 120.00651 * 359.71956 * 16 15 13 40 40 H 1.08996 * 115.54647 * 154.41265 * 21 11 10 41 41 H 1.09005 * 117.49957 * 359.97438 * 22 21 11 42 42 H 1.09000 * 117.50113 * 145.01940 * 22 21 11 43 43 H 1.08999 * 117.49595 * 214.98168 * 23 21 11 44 44 H 1.09000 * 117.49853 * 359.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7212 1.2493 6 6 1.5300 -2.1637 1.2493 7 6 2.0405 -2.8852 2.4982 8 6 1.5376 -4.3058 2.4984 9 8 0.8419 -4.7006 1.5929 10 8 1.8618 -5.1324 3.5052 11 6 1.3416 -6.4864 3.4400 12 1 0.3886 -6.4844 2.9111 13 6 1.1401 -7.0149 4.8367 14 1 1.3786 -6.3950 5.6883 15 6 0.6511 -8.2900 5.0275 16 7 0.3658 -9.0467 3.9904 17 14 0.4020 -8.9453 6.7589 18 1 -0.9712 -8.6174 7.2194 19 1 0.5863 -10.4188 6.7617 20 1 1.3926 -8.3208 7.6720 21 6 2.3363 -7.3794 2.6953 22 6 3.7069 -6.7862 2.3631 23 6 2.6777 -7.0056 1.2515 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6766 1.9563 0.8899 30 1 1.6766 -1.7489 -1.2493 31 1 1.6766 -0.2074 -2.1392 32 1 3.1299 -0.7209 -1.2495 33 1 1.6767 -0.2074 2.1392 34 1 3.1300 -0.7216 1.2490 35 1 1.8933 -2.6775 0.3592 36 1 0.4399 -2.1637 1.2493 37 1 1.6775 -2.3715 3.3883 38 1 3.1304 -2.8852 2.4977 39 1 0.4955 -8.7065 3.0914 40 1 2.2936 -8.4397 2.9441 41 1 3.9000 -5.7597 2.6747 42 1 4.5660 -7.4564 2.3929 43 1 2.8600 -7.8200 0.5505 44 1 2.1934 -6.1237 0.8320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345978028.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:36 Heat of formation + Delta-G solvation = -99.392423 kcal Electronic energy + Delta-G solvation = -21194.908232 eV Core-core repulsion = 18112.009006 eV Total energy + Delta-G solvation = -3082.899226 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.94850 -38.28789 -36.75451 -34.86220 -33.10341 -32.99142 -28.16715 -27.45308 -27.40903 -26.78728 -23.52294 -22.55740 -21.61156 -20.25379 -19.08918 -18.74887 -17.51035 -16.78965 -16.26543 -15.47051 -15.13076 -14.55396 -14.37278 -14.20185 -13.87887 -13.78845 -13.09993 -12.80551 -12.51909 -12.41523 -12.13084 -11.85104 -11.84066 -11.74131 -11.64633 -11.53069 -11.00160 -10.94876 -10.79901 -10.69215 -10.61786 -10.53897 -10.42559 -10.17745 -9.78714 -9.75427 -9.68458 -9.16039 -8.46423 -8.41220 -6.50509 -4.26295 2.90842 3.37774 3.42168 3.54665 3.61081 4.43170 4.57743 4.66011 4.67164 4.72098 5.07233 5.08894 5.20443 5.28778 5.41098 5.43457 5.46923 5.61354 5.63660 5.65248 5.66302 5.72881 5.76713 5.79331 5.85046 5.87851 5.93065 5.96309 6.05703 6.13125 6.18127 6.30223 6.34232 6.41911 6.50147 6.66503 6.84629 6.95947 7.19733 7.48986 7.92995 8.25250 8.60310 8.74038 9.43845 10.86113 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.031239 B = 0.003880 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.090363 B = 7215.488943 C = 7593.999741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.070 4.070 3 C -0.140 4.140 4 C -0.146 4.146 5 C -0.109 4.109 6 C -0.111 4.111 7 C -0.117 4.117 8 C 0.448 3.552 9 O -0.519 6.519 10 O -0.347 6.347 11 C 0.239 3.761 12 H 0.041 0.959 13 C -0.598 4.598 14 H 0.064 0.936 15 C 0.025 3.975 16 N -0.907 5.907 17 Si 1.081 2.919 18 H -0.285 1.285 19 H -0.282 1.282 20 H -0.286 1.286 21 C -0.146 4.146 22 C -0.181 4.181 23 C -0.208 4.208 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.277 0.723 40 H 0.122 0.878 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.403 16.572 -6.490 18.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.070 4.070 3 C -0.198 4.198 4 C -0.203 4.203 5 C -0.146 4.146 6 C -0.148 4.148 7 C -0.155 4.155 8 C 0.292 3.708 9 O -0.409 6.409 10 O -0.263 6.263 11 C 0.186 3.814 12 H 0.059 0.941 13 C -0.636 4.636 14 H 0.082 0.918 15 C -0.180 4.180 16 N -0.543 5.543 17 Si 0.908 3.092 18 H -0.212 1.212 19 H -0.207 1.207 20 H -0.212 1.212 21 C -0.165 4.165 22 C -0.218 4.218 23 C -0.245 4.245 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.089 0.911 40 H 0.140 0.860 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.694 15.075 -5.880 16.597 hybrid contribution 0.560 1.194 -1.007 1.659 sum 4.254 16.269 -6.887 18.172 Atomic orbital electron populations 1.21953 0.94612 1.02368 1.01386 1.20532 0.95796 0.95157 0.95493 1.21870 1.00842 0.95532 1.01537 1.21951 1.00847 1.00842 0.96652 1.21654 1.00570 0.95044 0.97335 1.21546 1.01949 0.94443 0.96903 1.21384 1.02806 0.90080 1.01184 1.23559 0.77870 0.88940 0.80462 1.90568 1.36223 1.77574 1.36578 1.86519 1.68885 1.26021 1.44842 1.20169 0.91349 0.72428 0.97490 0.94131 1.21836 1.48519 1.02711 0.90521 0.91766 1.25898 0.93210 0.92773 1.06074 1.70761 1.44444 1.39181 0.99940 0.83379 0.76612 0.76138 0.73116 1.21197 1.20750 1.21178 1.23251 0.96638 1.02247 0.94374 1.22741 0.93308 1.01676 1.04097 1.23202 1.04853 1.03607 0.92802 0.92753 0.92990 0.91904 0.92770 0.92857 0.92752 0.91918 0.92997 0.92778 0.91797 0.91836 0.90842 0.90783 0.88392 0.88535 0.91106 0.86036 0.89536 0.90075 0.90194 0.88473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.12 37.16 0.30 -1.06 16 2 C -0.07 -0.63 0.80 -154.51 -0.12 -0.76 16 3 C -0.14 -1.10 8.47 37.16 0.31 -0.78 16 4 C -0.15 -1.35 8.12 37.16 0.30 -1.05 16 5 C -0.11 -1.06 4.27 -26.73 -0.11 -1.17 16 6 C -0.11 -1.39 3.80 -26.73 -0.10 -1.49 16 7 C -0.12 -1.65 5.81 -27.88 -0.16 -1.81 16 8 C 0.45 9.04 6.90 36.00 0.25 9.29 16 9 O -0.52 -11.67 13.03 -18.75 -0.24 -11.91 16 10 O -0.35 -8.15 8.38 -39.28 -0.33 -8.48 16 11 C 0.24 6.34 2.12 -27.88 -0.06 6.28 16 12 H 0.04 1.19 7.03 -51.93 -0.36 0.83 16 13 C -0.60 -17.00 8.90 -34.44 -0.31 -17.31 16 14 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 15 C 0.03 0.70 5.20 -17.82 -0.09 0.61 16 16 N -0.91 -26.82 12.84 55.43 0.71 -26.11 16 17 Si 1.08 24.72 29.90 -169.99 -5.08 19.64 16 18 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 21 C -0.15 -3.59 4.66 -90.62 -0.42 -4.01 16 22 C -0.18 -3.78 9.80 -26.69 -0.26 -4.04 16 23 C -0.21 -4.44 9.85 -26.69 -0.26 -4.70 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.66 6.43 -51.93 -0.33 0.33 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.65 6.43 -51.93 -0.33 0.32 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.98 6.39 -51.93 -0.33 0.65 16 36 H 0.07 1.00 6.39 -51.93 -0.33 0.67 16 37 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.28 8.20 5.71 -40.82 -0.23 7.97 16 40 H 0.12 3.24 6.15 -51.93 -0.32 2.92 16 41 H 0.09 1.76 6.91 -51.93 -0.36 1.40 16 42 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 43 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 44 H 0.10 2.14 5.37 -51.93 -0.28 1.86 16 LS Contribution 342.75 15.07 5.17 5.17 Total: -1.00 -30.72 342.75 -8.11 -38.83 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -7.59 Total: 4.87 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: -0.74 Total: -22.00 kcal Atomic # 7 Polarization: -26.82 SS G_CDS: 0.71 Total: -26.11 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.57 Total: -20.39 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -5.08 Total: 19.64 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.72 -8.11 -38.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345978028.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.564 kcal (2) G-P(sol) polarization free energy of solvation -30.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds