Wall clock time and date at job start Mon Mar 30 2020 00:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47487 * 2 1 4 4 C 1.53004 * 109.47133 * 239.99834 * 2 1 3 5 5 C 1.53001 * 109.47225 * 119.99905 * 2 1 3 6 6 C 1.53000 * 109.47000 * 60.00023 * 5 2 1 7 7 C 1.53001 * 109.47368 * 179.97438 * 6 5 2 8 8 C 1.50697 * 109.47051 * 179.97438 * 7 6 5 9 9 O 1.20826 * 120.00099 * 359.97438 * 8 7 6 10 10 O 1.34237 * 119.99854 * 180.02562 * 8 7 6 11 11 C 1.45200 * 116.99983 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.46801 * 330.00444 * 11 10 8 13 13 C 1.50696 * 109.46946 * 209.99989 * 11 10 8 14 14 H 1.07999 * 120.00202 * 0.02562 * 13 11 10 15 15 C 1.37884 * 119.99746 * 180.02562 * 13 11 10 16 16 N 1.31514 * 119.99573 * 0.27650 * 15 13 11 17 17 Si 1.86800 * 119.99781 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46758 * 89.99934 * 17 15 13 19 19 H 1.48499 * 109.47026 * 209.99782 * 17 15 13 20 20 H 1.48496 * 109.47474 * 329.99818 * 17 15 13 21 21 C 1.53008 * 109.46596 * 90.00143 * 11 10 8 22 22 C 1.52999 * 117.49893 * 8.74806 * 21 11 10 23 23 C 1.52998 * 117.49827 * 300.08660 * 21 11 10 24 24 H 1.09002 * 109.46729 * 300.00453 * 1 2 3 25 25 H 1.09000 * 109.47271 * 59.99604 * 1 2 3 26 26 H 1.08995 * 109.47268 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47529 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47189 * 300.00446 * 3 2 1 29 29 H 1.09000 * 109.47030 * 59.99422 * 3 2 1 30 30 H 1.08991 * 109.47326 * 300.00300 * 4 2 1 31 31 H 1.09000 * 109.46583 * 60.00141 * 4 2 1 32 32 H 1.08994 * 109.47233 * 179.97438 * 4 2 1 33 33 H 1.08996 * 109.47080 * 299.99916 * 5 2 1 34 34 H 1.09004 * 109.47178 * 179.97438 * 5 2 1 35 35 H 1.09002 * 109.46958 * 59.99772 * 6 5 2 36 36 H 1.09004 * 109.46970 * 299.99901 * 6 5 2 37 37 H 1.09000 * 109.46480 * 60.00129 * 7 6 5 38 38 H 1.08994 * 109.46956 * 300.00090 * 7 6 5 39 39 H 0.97001 * 120.00651 * 359.71956 * 16 15 13 40 40 H 1.08996 * 115.54647 * 154.41265 * 21 11 10 41 41 H 1.09005 * 117.49957 * 359.97438 * 22 21 11 42 42 H 1.09000 * 117.50113 * 145.01940 * 22 21 11 43 43 H 1.08999 * 117.49595 * 214.98168 * 23 21 11 44 44 H 1.09000 * 117.49853 * 359.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7212 1.2493 6 6 1.5300 -2.1637 1.2493 7 6 2.0405 -2.8852 2.4982 8 6 1.5376 -4.3058 2.4984 9 8 0.8419 -4.7006 1.5929 10 8 1.8618 -5.1324 3.5052 11 6 1.3416 -6.4864 3.4400 12 1 0.3886 -6.4844 2.9111 13 6 1.1401 -7.0149 4.8367 14 1 1.3786 -6.3950 5.6883 15 6 0.6511 -8.2900 5.0275 16 7 0.3658 -9.0467 3.9904 17 14 0.4020 -8.9453 6.7589 18 1 -0.9712 -8.6174 7.2194 19 1 0.5863 -10.4188 6.7617 20 1 1.3926 -8.3208 7.6720 21 6 2.3363 -7.3794 2.6953 22 6 3.7069 -6.7862 2.3631 23 6 2.6777 -7.0056 1.2515 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6766 1.9563 0.8899 30 1 1.6766 -1.7489 -1.2493 31 1 1.6766 -0.2074 -2.1392 32 1 3.1299 -0.7209 -1.2495 33 1 1.6767 -0.2074 2.1392 34 1 3.1300 -0.7216 1.2490 35 1 1.8933 -2.6775 0.3592 36 1 0.4399 -2.1637 1.2493 37 1 1.6775 -2.3715 3.3883 38 1 3.1304 -2.8852 2.4977 39 1 0.4955 -8.7065 3.0914 40 1 2.2936 -8.4397 2.9441 41 1 3.9000 -5.7597 2.6747 42 1 4.5660 -7.4564 2.3929 43 1 2.8600 -7.8200 0.5505 44 1 2.1934 -6.1237 0.8320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345978028.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:36 Heat of formation + Delta-G solvation = -114.279963 kcal Electronic energy + Delta-G solvation = -21195.553804 eV Core-core repulsion = 18112.009006 eV Total energy + Delta-G solvation = -3083.544798 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.66336 -39.21663 -38.42871 -36.65964 -35.12736 -34.16633 -29.81725 -28.30363 -28.14683 -28.04338 -25.56355 -23.78023 -23.31646 -21.78143 -20.87476 -19.60732 -19.54036 -18.41918 -17.89862 -16.94422 -16.36691 -15.80820 -15.65263 -15.47433 -15.08896 -15.02680 -14.65970 -14.56999 -14.00388 -13.51844 -13.40812 -13.24322 -13.00382 -12.75225 -12.62752 -12.59098 -12.53082 -12.50255 -12.39889 -11.92029 -11.76900 -11.71119 -11.60577 -11.52907 -11.32742 -11.29065 -11.26587 -11.02271 -10.54560 -10.42857 -8.75886 -6.53255 1.28852 1.52840 1.61973 1.80659 1.97838 2.53823 2.90181 3.07347 3.71903 3.75004 3.87583 3.91082 3.99366 4.03959 4.09004 4.11507 4.23197 4.47493 4.59695 4.61003 4.63026 4.67794 4.79115 4.80666 4.82727 4.86203 4.95075 4.95796 5.01022 5.09506 5.11124 5.15771 5.18768 5.22353 5.24610 5.31056 5.46599 5.55192 5.57826 5.59828 5.87970 6.10527 6.37597 6.92175 7.27376 8.60928 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.031239 B = 0.003880 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.090363 B = 7215.488943 C = 7593.999741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.070 4.070 3 C -0.137 4.137 4 C -0.146 4.146 5 C -0.102 4.102 6 C -0.105 4.105 7 C -0.106 4.106 8 C 0.440 3.560 9 O -0.548 6.548 10 O -0.356 6.356 11 C 0.243 3.757 12 H -0.003 1.003 13 C -0.618 4.618 14 H 0.059 0.941 15 C -0.020 4.020 16 N -0.927 5.927 17 Si 1.128 2.872 18 H -0.272 1.272 19 H -0.278 1.278 20 H -0.267 1.267 21 C -0.178 4.178 22 C -0.154 4.154 23 C -0.194 4.194 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.043 0.957 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.044 0.956 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.119 0.881 38 H 0.124 0.876 39 H 0.265 0.735 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.107 0.893 43 H 0.099 0.901 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.010 18.281 -5.941 20.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.070 4.070 3 C -0.194 4.194 4 C -0.203 4.203 5 C -0.139 4.139 6 C -0.142 4.142 7 C -0.143 4.143 8 C 0.285 3.715 9 O -0.439 6.439 10 O -0.272 6.272 11 C 0.190 3.810 12 H 0.015 0.985 13 C -0.656 4.656 14 H 0.078 0.922 15 C -0.219 4.219 16 N -0.563 5.563 17 Si 0.947 3.053 18 H -0.198 1.198 19 H -0.203 1.203 20 H -0.191 1.191 21 C -0.197 4.197 22 C -0.191 4.191 23 C -0.231 4.231 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.137 0.863 38 H 0.142 0.858 39 H 0.076 0.924 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.125 0.875 43 H 0.118 0.882 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.310 16.820 -5.353 18.433 hybrid contribution 0.021 0.725 -1.263 1.457 sum 5.332 17.546 -6.616 19.495 Atomic orbital electron populations 1.21956 0.95133 1.01307 1.01980 1.20549 0.95393 0.96085 0.95009 1.21830 1.01237 0.94279 1.02063 1.21949 1.01247 0.99892 0.97207 1.21626 1.01320 0.92842 0.98145 1.21508 1.00972 0.96146 0.95588 1.21587 1.04283 0.85638 1.02837 1.24834 0.77117 0.90467 0.79067 1.90556 1.37524 1.78378 1.37447 1.86505 1.69072 1.25100 1.46531 1.19751 0.90394 0.74510 0.96386 0.98531 1.22158 1.48887 1.03159 0.91371 0.92248 1.27445 0.92121 0.93151 1.09154 1.70864 1.45889 1.39643 0.99934 0.82813 0.77680 0.75829 0.68937 1.19759 1.20330 1.19130 1.22919 0.99248 1.00594 0.96982 1.22857 0.92279 1.02233 1.01724 1.23191 1.04378 1.03687 0.91797 0.92277 0.92325 0.93768 0.92104 0.92401 0.92232 0.93696 0.92375 0.92102 0.90732 0.90475 0.92011 0.92413 0.86281 0.85823 0.92445 0.88587 0.88772 0.87489 0.88246 0.89274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 8.12 71.98 0.58 -2.01 16 2 C -0.07 -1.14 0.80 -52.18 -0.04 -1.18 16 3 C -0.14 -1.76 8.47 71.98 0.61 -1.15 16 4 C -0.15 -2.51 8.12 71.98 0.58 -1.92 16 5 C -0.10 -1.73 4.27 30.59 0.13 -1.60 16 6 C -0.10 -2.50 3.80 30.59 0.12 -2.38 16 7 C -0.11 -2.81 5.81 29.85 0.17 -2.63 16 8 C 0.44 17.78 6.90 71.23 0.49 18.27 16 9 O -0.55 -25.39 13.03 21.96 0.29 -25.10 16 10 O -0.36 -16.90 8.38 -51.48 -0.43 -17.33 16 11 C 0.24 13.38 2.12 29.85 0.06 13.44 16 12 H 0.00 -0.18 7.03 -2.39 -0.02 -0.20 16 13 C -0.62 -36.02 8.90 25.60 0.23 -35.80 16 14 H 0.06 3.42 7.81 -2.91 -0.02 3.40 16 15 C -0.02 -1.14 5.20 84.66 0.44 -0.70 16 16 N -0.93 -56.43 12.84 21.45 0.28 -56.16 16 17 Si 1.13 49.63 29.90 68.60 2.05 51.68 16 18 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 19 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 21 C -0.18 -8.93 4.66 -10.79 -0.05 -8.98 16 22 C -0.15 -6.19 9.80 30.62 0.30 -5.89 16 23 C -0.19 -8.22 9.85 30.62 0.30 -7.91 16 24 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.04 0.94 6.43 -2.39 -0.02 0.92 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.70 16 30 H 0.04 0.92 6.43 -2.39 -0.02 0.91 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.06 1.62 6.39 -2.39 -0.02 1.61 16 36 H 0.06 1.56 6.39 -2.39 -0.02 1.55 16 37 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 38 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 39 H 0.26 16.44 5.71 -92.71 -0.53 15.91 16 40 H 0.10 5.29 6.15 -2.39 -0.01 5.28 16 41 H 0.09 3.63 6.91 -2.38 -0.02 3.62 16 42 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 43 H 0.10 3.79 8.14 -2.39 -0.02 3.77 16 44 H 0.09 3.94 5.37 -2.39 -0.01 3.93 16 Total: -1.00 -68.93 342.75 7.31 -61.62 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: 1.19 Total: 25.74 kcal Atomic # 6 Polarization: -44.38 SS G_CDS: 3.93 Total: -40.45 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: 0.28 Total: -56.16 kcal Atomic # 8 Polarization: -42.28 SS G_CDS: -0.15 Total: -42.43 kcal Atomic # 14 Polarization: 49.63 SS G_CDS: 2.05 Total: 51.68 kcal Total: -68.93 7.31 -61.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345978028.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.661 kcal (2) G-P(sol) polarization free energy of solvation -68.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds