Wall clock time and date at job start Mon Mar 30 2020 00:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46934 * 2 1 4 4 C 1.53004 * 109.46979 * 302.51562 * 3 2 1 5 5 C 1.53004 * 109.47145 * 295.57097 * 4 3 2 6 6 C 1.52998 * 109.47333 * 62.51326 * 3 2 1 7 7 H 1.08999 * 109.47376 * 300.00439 * 6 3 2 8 8 C 1.52996 * 109.47075 * 180.02562 * 6 3 2 9 9 C 1.50699 * 109.46823 * 60.00188 * 6 3 2 10 10 O 1.20825 * 120.00290 * 359.97438 * 9 6 3 11 11 O 1.34230 * 119.99828 * 179.97438 * 9 6 3 12 12 C 1.45203 * 116.99632 * 179.97438 * 11 9 6 13 13 H 1.08996 * 109.47435 * 330.00050 * 12 11 9 14 14 C 1.50705 * 109.46712 * 209.99971 * 12 11 9 15 15 H 1.07997 * 120.00046 * 274.83694 * 14 12 11 16 16 C 1.37881 * 119.99576 * 94.84705 * 14 12 11 17 17 N 1.31515 * 119.99896 * 184.33127 * 16 14 12 18 18 Si 1.86802 * 120.00079 * 4.32175 * 16 14 12 19 19 H 1.48495 * 109.47030 * 84.72662 * 18 16 14 20 20 H 1.48505 * 109.46760 * 204.72673 * 18 16 14 21 21 H 1.48495 * 109.47018 * 324.72355 * 18 16 14 22 22 C 1.52996 * 109.46865 * 90.00471 * 12 11 9 23 23 C 1.53006 * 117.49925 * 225.62977 * 22 12 11 24 24 C 1.53000 * 117.50180 * 294.28830 * 22 12 11 25 25 H 1.08995 * 109.47184 * 66.14260 * 1 2 3 26 26 H 1.08996 * 109.47028 * 186.14401 * 1 2 3 27 27 H 1.08997 * 109.46858 * 306.14135 * 1 2 3 28 28 H 1.08998 * 109.47129 * 240.00289 * 2 1 3 29 29 H 1.08995 * 109.46986 * 119.99398 * 2 1 3 30 30 H 1.09000 * 109.46837 * 182.52190 * 3 2 1 31 31 H 1.08997 * 109.47475 * 55.56638 * 4 3 2 32 32 H 1.09000 * 109.47345 * 175.56924 * 4 3 2 33 33 H 1.08999 * 109.47058 * 65.93892 * 5 4 3 34 34 H 1.09002 * 109.47061 * 185.93645 * 5 4 3 35 35 H 1.09002 * 109.46988 * 305.93652 * 5 4 3 36 36 H 1.08999 * 109.47361 * 300.00428 * 8 6 3 37 37 H 1.08999 * 109.47524 * 60.00213 * 8 6 3 38 38 H 1.08999 * 109.46984 * 180.02562 * 8 6 3 39 39 H 0.96996 * 120.00262 * 179.97438 * 17 16 14 40 40 H 1.09001 * 115.55266 * 79.96055 * 22 12 11 41 41 H 1.08999 * 117.49813 * 215.00535 * 23 22 12 42 42 H 1.08997 * 117.49524 * 0.02562 * 23 22 12 43 43 H 1.09000 * 117.49313 * 359.97438 * 24 22 12 44 44 H 1.08998 * 117.50202 * 144.99855 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4789 2.1818 -1.2164 5 6 2.0256 1.5462 -2.4964 6 6 1.5823 2.1453 1.2796 7 1 0.4933 2.1449 1.3248 8 6 2.0918 3.5880 1.2793 9 6 2.1350 1.4172 2.4777 10 8 2.8238 0.4365 2.3239 11 8 1.8620 1.8581 3.7158 12 6 2.4272 1.1071 4.8225 13 1 2.5289 0.0602 4.5369 14 6 1.5178 1.2154 6.0194 15 1 1.6027 2.0596 6.6875 16 6 0.5776 0.2364 6.2615 17 7 -0.2723 0.3724 7.2558 18 14 0.5108 -1.2831 5.1769 19 1 1.4852 -2.2881 5.6724 20 1 -0.8575 -1.8591 5.2158 21 1 0.8512 -0.9099 3.7805 22 6 3.8033 1.6757 5.1745 23 6 4.9428 0.6796 5.3996 24 6 4.9135 1.5359 4.1311 25 1 -0.3633 0.4156 -0.9398 26 1 -0.3633 -1.0217 0.1100 27 1 -0.3633 0.6061 0.8299 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.1291 1.4429 -0.0452 31 1 0.3911 2.1138 -1.2131 32 1 1.7776 3.2293 -1.1747 33 1 1.6403 0.5310 -2.5911 34 1 1.7115 2.1359 -3.3576 35 1 3.1144 1.5191 -2.4522 36 1 3.1808 3.5888 1.2339 37 1 1.6917 4.1144 0.4127 38 1 1.7661 4.0885 2.1911 39 1 -0.9340 -0.3161 7.4260 40 1 3.7968 2.5791 5.7844 41 1 5.6857 0.9278 6.1575 42 1 4.7121 -0.3806 5.2964 43 1 4.6636 1.0384 3.1940 44 1 5.6373 2.3472 4.0544 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346707723.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:57 Heat of formation + Delta-G solvation = -91.308930 kcal Electronic energy + Delta-G solvation = -22261.625598 eV Core-core repulsion = 19179.076898 eV Total energy + Delta-G solvation = -3082.548700 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.05628 -37.83490 -36.24815 -34.88869 -32.81705 -32.15029 -31.12120 -28.55877 -26.27164 -24.32337 -23.24371 -22.94031 -21.70537 -20.47442 -19.30006 -18.71044 -17.31634 -16.67309 -15.90706 -15.57119 -15.24303 -14.76535 -14.31922 -14.01033 -13.84699 -13.27130 -13.00401 -12.87427 -12.68793 -12.31812 -12.11072 -11.83328 -11.63787 -11.55708 -11.44989 -11.37353 -11.22465 -10.97423 -10.88611 -10.78410 -10.33591 -10.28183 -10.23384 -10.03991 -9.74661 -9.49573 -9.33331 -9.26926 -8.87406 -8.76067 -6.36729 -4.42766 3.09551 3.16721 3.26435 3.35629 3.65938 4.22816 4.56677 4.79381 4.91504 4.93365 5.14670 5.24619 5.35427 5.41505 5.48674 5.54879 5.56093 5.59924 5.69729 5.70580 5.73408 5.85974 5.93171 5.97070 6.03301 6.06908 6.12600 6.18098 6.20327 6.21637 6.31684 6.41154 6.45810 6.51585 6.58154 6.67915 6.72826 6.78545 7.03239 7.38501 7.74908 8.25581 8.73327 8.86630 9.24835 10.73145 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.018512 B = 0.007089 C = 0.006009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.138923 B = 3948.646161 C = 4658.254846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.135 4.135 3 C -0.067 4.067 4 C -0.124 4.124 5 C -0.150 4.150 6 C -0.091 4.091 7 H 0.101 0.899 8 C -0.142 4.142 9 C 0.455 3.545 10 O -0.527 6.527 11 O -0.352 6.352 12 C 0.205 3.795 13 H 0.051 0.949 14 C -0.504 4.504 15 H 0.084 0.916 16 C 0.087 3.913 17 N -0.870 5.870 18 Si 0.871 3.129 19 H -0.270 1.270 20 H -0.283 1.283 21 H -0.258 1.258 22 C -0.136 4.136 23 C -0.171 4.171 24 C -0.203 4.203 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.271 0.729 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.104 0.896 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.906 2.871 -14.934 15.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.173 4.173 3 C -0.086 4.086 4 C -0.162 4.162 5 C -0.207 4.207 6 C -0.110 4.110 7 H 0.119 0.881 8 C -0.199 4.199 9 C 0.299 3.701 10 O -0.419 6.419 11 O -0.269 6.269 12 C 0.154 3.846 13 H 0.069 0.931 14 C -0.540 4.540 15 H 0.102 0.898 16 C -0.120 4.120 17 N -0.506 5.506 18 Si 0.697 3.303 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.182 1.182 22 C -0.154 4.154 23 C -0.208 4.208 24 C -0.240 4.240 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.118 0.882 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.122 0.878 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.955 2.510 -14.800 15.523 hybrid contribution -0.114 -0.919 -0.342 0.987 sum 3.842 1.591 -15.141 15.702 Atomic orbital electron populations 1.21904 0.96675 1.01415 1.01370 1.21836 0.95429 0.96417 1.03577 1.21021 1.00646 0.94903 0.92032 1.21706 1.00935 0.99480 0.94045 1.21778 1.01038 1.00865 0.97063 1.21178 1.02359 0.96115 0.91366 0.88089 1.21773 1.01341 0.93911 1.02924 1.23462 0.77600 0.82719 0.86301 1.90434 1.37525 1.26830 1.87090 1.86997 1.68504 1.57283 1.14070 1.20561 0.89618 0.91434 0.83010 0.93148 1.20901 1.18051 1.09904 1.05138 0.89799 1.25149 0.93733 0.98432 0.94703 1.69892 1.17183 1.34344 1.29181 0.86915 0.77811 0.83226 0.82379 1.19519 1.20838 1.18223 1.22618 0.90690 1.00723 1.01375 1.22784 1.01415 0.97285 0.99350 1.23194 1.02806 1.02888 0.95090 0.92862 0.93223 0.92637 0.92369 0.89123 0.90688 0.91564 0.91684 0.92608 0.93145 0.92846 0.92482 0.91595 0.91064 0.91885 0.88154 0.89451 0.89325 0.87811 0.90173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.15 37.16 0.34 -1.80 16 2 C -0.14 -1.99 5.10 -26.73 -0.14 -2.13 16 3 C -0.07 -0.92 1.40 -90.62 -0.13 -1.05 16 4 C -0.12 -1.33 4.89 -26.73 -0.13 -1.46 16 5 C -0.15 -1.44 9.50 37.16 0.35 -1.08 16 6 C -0.09 -1.42 2.13 -91.78 -0.20 -1.61 16 7 H 0.10 1.54 6.36 -51.93 -0.33 1.21 16 8 C -0.14 -1.89 8.78 37.16 0.33 -1.56 16 9 C 0.45 9.32 6.42 36.01 0.23 9.55 16 10 O -0.53 -11.52 10.60 -18.75 -0.20 -11.72 16 11 O -0.35 -8.29 9.77 -39.26 -0.38 -8.67 16 12 C 0.21 5.08 1.85 -27.88 -0.05 5.03 16 13 H 0.05 1.31 4.15 -51.93 -0.22 1.10 16 14 C -0.50 -14.13 9.25 -34.44 -0.32 -14.45 16 15 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 16 C 0.09 2.46 5.47 -17.82 -0.10 2.37 16 17 N -0.87 -25.61 13.96 55.43 0.77 -24.84 16 18 Si 0.87 21.77 26.97 -169.99 -4.58 17.19 16 19 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.26 -6.53 6.85 56.52 0.39 -6.15 16 22 C -0.14 -2.92 5.33 -90.62 -0.48 -3.40 16 23 C -0.17 -3.26 10.18 -26.69 -0.27 -3.53 16 24 C -0.20 -3.81 9.82 -26.69 -0.26 -4.08 16 25 H 0.05 0.61 6.64 -51.93 -0.34 0.26 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.82 6.20 -51.93 -0.32 0.50 16 28 H 0.06 0.76 6.81 -51.93 -0.35 0.41 16 29 H 0.09 1.66 5.46 -51.93 -0.28 1.37 16 30 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 31 H 0.07 0.69 6.28 -51.93 -0.33 0.36 16 32 H 0.06 0.64 6.20 -51.93 -0.32 0.31 16 33 H 0.05 0.54 6.91 -51.93 -0.36 0.18 16 34 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.69 6.33 -51.93 -0.33 0.37 16 38 H 0.07 1.01 8.11 -51.93 -0.42 0.59 16 39 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.10 2.13 8.14 -51.93 -0.42 1.70 16 41 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 42 H 0.09 1.74 8.08 -51.93 -0.42 1.32 16 43 H 0.10 2.09 5.60 -51.93 -0.29 1.80 16 44 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 336.25 15.07 5.07 5.07 Total: -1.00 -29.74 336.25 -7.42 -37.16 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -7.27 Total: 5.02 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: -0.82 Total: -19.21 kcal Atomic # 7 Polarization: -25.61 SS G_CDS: 0.77 Total: -24.84 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.58 Total: -20.39 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.58 Total: 17.19 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.74 -7.42 -37.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346707723.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.150 kcal (2) G-P(sol) polarization free energy of solvation -29.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds