Wall clock time and date at job start Mon Mar 30 2020 00:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46934 * 2 1 4 4 C 1.53004 * 109.46979 * 302.51562 * 3 2 1 5 5 C 1.53004 * 109.47145 * 295.57097 * 4 3 2 6 6 C 1.52998 * 109.47333 * 62.51326 * 3 2 1 7 7 H 1.08999 * 109.47376 * 300.00439 * 6 3 2 8 8 C 1.52996 * 109.47075 * 180.02562 * 6 3 2 9 9 C 1.50699 * 109.46823 * 60.00188 * 6 3 2 10 10 O 1.20825 * 120.00290 * 359.97438 * 9 6 3 11 11 O 1.34230 * 119.99828 * 179.97438 * 9 6 3 12 12 C 1.45203 * 116.99632 * 179.97438 * 11 9 6 13 13 H 1.08996 * 109.47435 * 330.00050 * 12 11 9 14 14 C 1.50705 * 109.46712 * 209.99971 * 12 11 9 15 15 H 1.07997 * 120.00046 * 274.83694 * 14 12 11 16 16 C 1.37881 * 119.99576 * 94.84705 * 14 12 11 17 17 N 1.31515 * 119.99896 * 184.33127 * 16 14 12 18 18 Si 1.86802 * 120.00079 * 4.32175 * 16 14 12 19 19 H 1.48495 * 109.47030 * 84.72662 * 18 16 14 20 20 H 1.48505 * 109.46760 * 204.72673 * 18 16 14 21 21 H 1.48495 * 109.47018 * 324.72355 * 18 16 14 22 22 C 1.52996 * 109.46865 * 90.00471 * 12 11 9 23 23 C 1.53006 * 117.49925 * 225.62977 * 22 12 11 24 24 C 1.53000 * 117.50180 * 294.28830 * 22 12 11 25 25 H 1.08995 * 109.47184 * 66.14260 * 1 2 3 26 26 H 1.08996 * 109.47028 * 186.14401 * 1 2 3 27 27 H 1.08997 * 109.46858 * 306.14135 * 1 2 3 28 28 H 1.08998 * 109.47129 * 240.00289 * 2 1 3 29 29 H 1.08995 * 109.46986 * 119.99398 * 2 1 3 30 30 H 1.09000 * 109.46837 * 182.52190 * 3 2 1 31 31 H 1.08997 * 109.47475 * 55.56638 * 4 3 2 32 32 H 1.09000 * 109.47345 * 175.56924 * 4 3 2 33 33 H 1.08999 * 109.47058 * 65.93892 * 5 4 3 34 34 H 1.09002 * 109.47061 * 185.93645 * 5 4 3 35 35 H 1.09002 * 109.46988 * 305.93652 * 5 4 3 36 36 H 1.08999 * 109.47361 * 300.00428 * 8 6 3 37 37 H 1.08999 * 109.47524 * 60.00213 * 8 6 3 38 38 H 1.08999 * 109.46984 * 180.02562 * 8 6 3 39 39 H 0.96996 * 120.00262 * 179.97438 * 17 16 14 40 40 H 1.09001 * 115.55266 * 79.96055 * 22 12 11 41 41 H 1.08999 * 117.49813 * 215.00535 * 23 22 12 42 42 H 1.08997 * 117.49524 * 0.02562 * 23 22 12 43 43 H 1.09000 * 117.49313 * 359.97438 * 24 22 12 44 44 H 1.08998 * 117.50202 * 144.99855 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4789 2.1818 -1.2164 5 6 2.0256 1.5462 -2.4964 6 6 1.5823 2.1453 1.2796 7 1 0.4933 2.1449 1.3248 8 6 2.0918 3.5880 1.2793 9 6 2.1350 1.4172 2.4777 10 8 2.8238 0.4365 2.3239 11 8 1.8620 1.8581 3.7158 12 6 2.4272 1.1071 4.8225 13 1 2.5289 0.0602 4.5369 14 6 1.5178 1.2154 6.0194 15 1 1.6027 2.0596 6.6875 16 6 0.5776 0.2364 6.2615 17 7 -0.2723 0.3724 7.2558 18 14 0.5108 -1.2831 5.1769 19 1 1.4852 -2.2881 5.6724 20 1 -0.8575 -1.8591 5.2158 21 1 0.8512 -0.9099 3.7805 22 6 3.8033 1.6757 5.1745 23 6 4.9428 0.6796 5.3996 24 6 4.9135 1.5359 4.1311 25 1 -0.3633 0.4156 -0.9398 26 1 -0.3633 -1.0217 0.1100 27 1 -0.3633 0.6061 0.8299 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.1291 1.4429 -0.0452 31 1 0.3911 2.1138 -1.2131 32 1 1.7776 3.2293 -1.1747 33 1 1.6403 0.5310 -2.5911 34 1 1.7115 2.1359 -3.3576 35 1 3.1144 1.5191 -2.4522 36 1 3.1808 3.5888 1.2339 37 1 1.6917 4.1144 0.4127 38 1 1.7661 4.0885 2.1911 39 1 -0.9340 -0.3161 7.4260 40 1 3.7968 2.5791 5.7844 41 1 5.6857 0.9278 6.1575 42 1 4.7121 -0.3806 5.2964 43 1 4.6636 1.0384 3.1940 44 1 5.6373 2.3472 4.0544 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346707723.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:56 Heat of formation + Delta-G solvation = -106.432212 kcal Electronic energy + Delta-G solvation = -22262.281393 eV Core-core repulsion = 19179.076898 eV Total energy + Delta-G solvation = -3083.204494 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.65108 -39.23166 -37.75045 -36.61591 -34.93619 -33.34128 -32.06821 -30.53351 -27.31098 -25.82262 -24.71506 -24.21935 -23.23093 -21.93986 -21.06325 -19.92222 -19.30592 -18.39583 -17.47748 -17.24086 -16.50944 -16.18779 -15.77280 -15.55008 -15.20272 -14.81101 -14.64428 -14.05464 -13.82869 -13.71325 -13.44420 -13.36172 -13.14279 -13.08932 -12.88066 -12.61018 -12.58344 -12.33022 -12.27347 -12.11511 -11.89395 -11.78170 -11.55295 -11.33194 -11.23411 -11.10802 -11.08356 -10.98574 -10.82156 -10.53249 -8.55419 -6.65547 1.15940 1.20177 1.31750 1.47738 2.00476 2.12813 2.98685 3.01326 3.66087 3.79208 3.87190 3.95425 4.06663 4.13330 4.21709 4.27235 4.35260 4.41439 4.46998 4.52632 4.57286 4.71586 4.74119 4.81966 4.83466 4.89695 4.96310 5.01244 5.01881 5.05759 5.14805 5.20962 5.23953 5.28714 5.32720 5.33309 5.39495 5.40683 5.51674 5.65852 5.92006 6.20858 6.47651 7.04573 7.14894 8.58994 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.018512 B = 0.007089 C = 0.006009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.138923 B = 3948.646161 C = 4658.254846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.136 4.136 3 C -0.061 4.061 4 C -0.118 4.118 5 C -0.149 4.149 6 C -0.087 4.087 7 H 0.106 0.894 8 C -0.138 4.138 9 C 0.446 3.554 10 O -0.541 6.541 11 O -0.369 6.369 12 C 0.211 3.789 13 H 0.036 0.964 14 C -0.517 4.517 15 H 0.051 0.949 16 C 0.044 3.956 17 N -0.911 5.911 18 Si 0.926 3.074 19 H -0.260 1.260 20 H -0.269 1.269 21 H -0.269 1.269 22 C -0.166 4.166 23 C -0.162 4.162 24 C -0.179 4.179 25 H 0.081 0.919 26 H 0.046 0.954 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.101 0.899 38 H 0.057 0.943 39 H 0.277 0.723 40 H 0.098 0.902 41 H 0.117 0.883 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.677 3.240 -17.694 18.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.173 4.173 3 C -0.080 4.080 4 C -0.155 4.155 5 C -0.206 4.206 6 C -0.106 4.106 7 H 0.124 0.876 8 C -0.195 4.195 9 C 0.292 3.708 10 O -0.433 6.433 11 O -0.286 6.286 12 C 0.159 3.841 13 H 0.054 0.946 14 C -0.553 4.553 15 H 0.070 0.930 16 C -0.160 4.160 17 N -0.548 5.548 18 Si 0.750 3.250 19 H -0.185 1.185 20 H -0.194 1.194 21 H -0.193 1.193 22 C -0.185 4.185 23 C -0.199 4.199 24 C -0.216 4.216 25 H 0.100 0.900 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.093 0.907 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.120 0.880 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.117 0.883 41 H 0.136 0.864 42 H 0.098 0.902 43 H 0.108 0.892 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.732 2.878 -17.566 18.419 hybrid contribution -0.308 -0.991 0.469 1.139 sum 4.424 1.886 -17.097 17.761 Atomic orbital electron populations 1.21900 0.95860 1.01231 1.02202 1.21787 0.96172 0.97022 1.02332 1.21016 1.00254 0.94411 0.92304 1.21685 1.01216 0.99878 0.92760 1.21772 1.00935 1.00960 0.96977 1.21356 1.02422 0.97197 0.89633 0.87617 1.21790 1.01567 0.92213 1.03899 1.24444 0.77363 0.82784 0.86250 1.90434 1.38229 1.27541 1.87113 1.86881 1.69196 1.57188 1.15354 1.20266 0.90520 0.91068 0.82208 0.94573 1.21038 1.18816 1.08983 1.06496 0.93038 1.25790 0.93473 1.00887 0.95805 1.69974 1.18350 1.35662 1.30859 0.86053 0.78547 0.80360 0.80017 1.18514 1.19424 1.19348 1.22501 0.90074 1.01882 1.04027 1.22923 1.00314 0.96369 1.00303 1.23176 1.01281 1.03195 0.93939 0.90036 0.93516 0.94195 0.90714 0.93194 0.91469 0.90870 0.90172 0.92842 0.91413 0.93004 0.92279 0.88049 0.92427 0.91393 0.88333 0.86434 0.90239 0.89184 0.87039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.98 9.15 71.98 0.66 -3.32 16 2 C -0.14 -3.82 5.10 30.60 0.16 -3.67 16 3 C -0.06 -1.54 1.40 -10.79 -0.02 -1.56 16 4 C -0.12 -2.09 4.89 30.60 0.15 -1.94 16 5 C -0.15 -2.31 9.50 71.98 0.68 -1.63 16 6 C -0.09 -2.60 2.13 -11.54 -0.02 -2.62 16 7 H 0.11 3.09 6.36 -2.39 -0.02 3.07 16 8 C -0.14 -3.34 8.78 71.98 0.63 -2.71 16 9 C 0.45 18.29 6.42 71.24 0.46 18.75 16 10 O -0.54 -23.83 10.60 21.97 0.23 -23.60 16 11 O -0.37 -17.71 9.77 -51.41 -0.50 -18.22 16 12 C 0.21 10.72 1.85 29.85 0.06 10.77 16 13 H 0.04 1.93 4.15 -2.39 -0.01 1.92 16 14 C -0.52 -30.15 9.25 25.60 0.24 -29.92 16 15 H 0.05 3.25 8.06 -2.91 -0.02 3.22 16 16 C 0.04 2.54 5.47 84.66 0.46 3.01 16 17 N -0.91 -55.23 13.96 21.45 0.30 -54.93 16 18 Si 0.93 46.01 26.97 68.60 1.85 47.87 16 19 H -0.26 -12.42 7.11 99.48 0.71 -11.72 16 20 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 21 H -0.27 -13.67 6.85 99.48 0.68 -12.99 16 22 C -0.17 -7.18 5.33 -10.79 -0.06 -7.24 16 23 C -0.16 -5.96 10.18 30.62 0.31 -5.65 16 24 C -0.18 -6.45 9.82 30.62 0.30 -6.15 16 25 H 0.08 1.61 6.64 -2.39 -0.02 1.60 16 26 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.04 1.13 6.20 -2.39 -0.01 1.12 16 28 H 0.07 1.82 6.81 -2.39 -0.02 1.80 16 29 H 0.05 1.83 5.46 -2.39 -0.01 1.82 16 30 H 0.07 1.81 8.10 -2.39 -0.02 1.79 16 31 H 0.07 1.22 6.28 -2.39 -0.01 1.21 16 32 H 0.08 1.20 6.20 -2.39 -0.01 1.19 16 33 H 0.05 0.85 6.91 -2.39 -0.02 0.84 16 34 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.10 1.75 6.33 -2.39 -0.02 1.73 16 38 H 0.06 1.56 8.11 -2.39 -0.02 1.54 16 39 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 40 H 0.10 4.24 8.14 -2.39 -0.02 4.22 16 41 H 0.12 3.58 8.14 -2.39 -0.02 3.56 16 42 H 0.08 3.06 8.08 -2.39 -0.02 3.04 16 43 H 0.09 3.53 5.60 -2.39 -0.01 3.52 16 44 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 Total: -1.00 -66.85 336.25 6.84 -60.02 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.95 Total: 22.73 kcal Atomic # 6 Polarization: -37.87 SS G_CDS: 4.01 Total: -33.86 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: 0.30 Total: -54.93 kcal Atomic # 8 Polarization: -41.55 SS G_CDS: -0.27 Total: -41.82 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.85 Total: 47.87 kcal Total: -66.85 6.84 -60.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346707723.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.416 kcal (2) G-P(sol) polarization free energy of solvation -66.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds