Wall clock time and date at job start Mon Mar 30 2020 00:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47110 * 2 1 4 4 C 1.53003 * 109.47109 * 296.90498 * 3 2 1 5 5 C 1.52995 * 109.47326 * 294.86141 * 4 3 2 6 6 C 1.52996 * 109.47228 * 56.90833 * 3 2 1 7 7 H 1.09009 * 109.46884 * 300.00082 * 6 3 2 8 8 C 1.53003 * 109.47049 * 59.99573 * 6 3 2 9 9 C 1.50695 * 109.47407 * 179.97438 * 6 3 2 10 10 O 1.20824 * 120.00114 * 0.02562 * 9 6 3 11 11 O 1.34226 * 120.00065 * 179.97438 * 9 6 3 12 12 C 1.45204 * 117.00177 * 179.97438 * 11 9 6 13 13 H 1.09002 * 109.47031 * 29.99912 * 12 11 9 14 14 C 1.50691 * 109.47289 * 149.99946 * 12 11 9 15 15 H 1.08010 * 120.00152 * 114.56219 * 14 12 11 16 16 C 1.37876 * 120.00452 * 294.83985 * 14 12 11 17 17 N 1.31513 * 120.00836 * 172.15018 * 16 14 12 18 18 Si 1.86806 * 119.99614 * 352.14893 * 16 14 12 19 19 H 1.48500 * 109.46902 * 89.53365 * 18 16 14 20 20 H 1.48500 * 109.47115 * 209.53098 * 18 16 14 21 21 H 1.48492 * 109.47279 * 329.53208 * 18 16 14 22 22 C 1.53005 * 109.47225 * 270.00398 * 12 11 9 23 23 C 1.52994 * 117.49817 * 134.14822 * 22 12 11 24 24 C 1.52997 * 117.49896 * 65.48887 * 22 12 11 25 25 H 1.09004 * 109.47186 * 183.61005 * 1 2 3 26 26 H 1.09000 * 109.47040 * 303.60938 * 1 2 3 27 27 H 1.09002 * 109.46884 * 63.61055 * 1 2 3 28 28 H 1.09008 * 109.46974 * 240.00424 * 2 1 3 29 29 H 1.08996 * 109.47436 * 120.00393 * 2 1 3 30 30 H 1.09007 * 109.46800 * 176.90959 * 3 2 1 31 31 H 1.09001 * 109.46724 * 54.86406 * 4 3 2 32 32 H 1.09003 * 109.46875 * 174.86209 * 4 3 2 33 33 H 1.08999 * 109.47468 * 186.15072 * 5 4 3 34 34 H 1.09004 * 109.47543 * 306.15558 * 5 4 3 35 35 H 1.09004 * 109.47220 * 66.15468 * 5 4 3 36 36 H 1.08995 * 109.46674 * 60.00586 * 8 6 3 37 37 H 1.08999 * 109.46517 * 179.97438 * 8 6 3 38 38 H 1.08989 * 109.46990 * 300.00308 * 8 6 3 39 39 H 0.96992 * 120.00517 * 179.97438 * 17 16 14 40 40 H 1.08997 * 115.54373 * 279.82052 * 22 12 11 41 41 H 1.08993 * 117.50247 * 359.97438 * 23 22 12 42 42 H 1.09002 * 117.49304 * 145.02135 * 23 22 12 43 43 H 1.09001 * 117.49938 * 214.98289 * 24 22 12 44 44 H 1.09003 * 117.50157 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5946 2.1409 -1.2864 5 6 2.2696 1.4761 -2.4877 6 6 1.4675 2.1858 1.2085 7 1 0.3788 2.1853 1.1530 8 6 1.9129 1.4873 2.4948 9 6 1.9703 3.6064 1.2089 10 8 2.7102 3.9857 0.3322 11 8 1.5953 4.4508 2.1825 12 6 2.1187 5.8038 2.1196 13 1 2.2867 6.0803 1.0787 14 6 1.1274 6.7552 2.7384 15 1 1.3811 7.2858 3.6443 16 6 -0.1058 6.9441 2.1513 17 7 -1.0268 7.6512 2.7688 18 14 -0.4684 6.1956 0.4786 19 1 -1.0281 4.8318 0.6575 20 1 -1.4523 7.0441 -0.2405 21 1 0.7869 6.1160 -0.3106 22 6 3.4410 5.8753 2.8860 23 6 4.6082 6.6017 2.2146 24 6 4.6223 5.0756 2.3328 25 1 -0.3634 -1.0257 0.0647 26 1 -0.3633 0.5688 0.8559 27 1 -0.3633 0.4568 -0.9206 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.1287 1.4429 0.0554 31 1 0.5122 2.0605 -1.3873 32 1 1.8787 3.1925 -1.2459 33 1 2.0396 2.0399 -3.3918 34 1 3.3487 1.4592 -2.3348 35 1 1.9015 0.4555 -2.5925 36 1 3.0014 1.4879 2.5502 37 1 1.5054 2.0173 3.3557 38 1 1.5496 0.4598 2.4947 39 1 -1.8942 7.7844 2.3557 40 1 3.3526 5.9583 3.9692 41 1 4.4343 7.0283 1.2269 42 1 5.2880 7.1623 2.8563 43 1 5.3113 4.6329 3.0521 44 1 4.4573 4.4982 1.4231 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346707729.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:59 Heat of formation + Delta-G solvation = -87.220013 kcal Electronic energy + Delta-G solvation = -22378.329609 eV Core-core repulsion = 19295.958219 eV Total energy + Delta-G solvation = -3082.371391 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.10770 -37.88631 -36.28582 -34.96792 -32.77905 -32.23988 -30.89511 -28.51375 -26.41891 -24.60323 -23.23754 -22.58832 -21.72931 -20.54751 -19.33012 -18.63270 -17.28965 -16.92779 -15.99548 -15.62239 -15.40543 -14.56649 -14.21318 -13.96837 -13.62343 -13.22075 -13.09780 -12.94270 -12.56070 -12.45154 -12.26722 -12.05230 -11.59372 -11.52362 -11.47238 -11.31529 -11.20421 -10.94465 -10.84439 -10.79891 -10.34587 -10.23067 -10.21090 -10.09941 -9.79291 -9.48606 -9.40557 -9.31247 -8.90268 -8.73550 -6.33751 -4.38774 3.02508 3.21280 3.27420 3.35976 3.63704 4.27366 4.55206 4.73307 4.89638 4.96751 5.15867 5.28565 5.32758 5.42296 5.45287 5.49332 5.54835 5.60026 5.67497 5.70443 5.75390 5.86508 5.92421 5.94681 6.01947 6.07221 6.12671 6.18473 6.21284 6.23430 6.28717 6.32181 6.45739 6.52333 6.56713 6.64146 6.70664 6.77169 7.04045 7.39020 7.75297 8.26480 8.70690 8.82329 9.28489 10.75931 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.016726 B = 0.007716 C = 0.006514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.668238 B = 3627.741807 C = 4297.415542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.120 4.120 3 C -0.068 4.068 4 C -0.140 4.140 5 C -0.144 4.144 6 C -0.093 4.093 7 H 0.101 0.899 8 C -0.141 4.141 9 C 0.451 3.549 10 O -0.523 6.523 11 O -0.351 6.351 12 C 0.204 3.796 13 H 0.051 0.949 14 C -0.508 4.508 15 H 0.087 0.913 16 C 0.090 3.910 17 N -0.872 5.872 18 Si 0.866 3.134 19 H -0.270 1.270 20 H -0.285 1.285 21 H -0.257 1.257 22 C -0.138 4.138 23 C -0.171 4.171 24 C -0.200 4.200 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.270 0.730 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.219 -13.738 -4.906 15.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.157 4.157 3 C -0.086 4.086 4 C -0.177 4.177 5 C -0.201 4.201 6 C -0.113 4.113 7 H 0.119 0.881 8 C -0.199 4.199 9 C 0.295 3.705 10 O -0.415 6.415 11 O -0.267 6.267 12 C 0.153 3.847 13 H 0.069 0.931 14 C -0.544 4.544 15 H 0.105 0.895 16 C -0.117 4.117 17 N -0.508 5.508 18 Si 0.693 3.307 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.181 1.181 22 C -0.156 4.156 23 C -0.208 4.208 24 C -0.237 4.237 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.119 0.881 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.253 -13.486 -5.127 15.354 hybrid contribution -0.331 -0.212 -0.803 0.894 sum 4.922 -13.698 -5.930 15.717 Atomic orbital electron populations 1.21929 0.96112 1.01275 1.02415 1.21613 0.96109 0.96094 1.01878 1.21028 1.00536 0.93816 0.93246 1.21918 0.99805 1.02448 0.93575 1.21725 1.00633 0.99902 0.97856 1.21223 1.02556 0.90009 0.97467 0.88089 1.21754 1.01672 1.00313 0.96126 1.23542 0.78036 0.88666 0.80237 1.90452 1.35322 1.78344 1.37351 1.86989 1.66644 1.25714 1.47346 1.20673 0.90573 0.76484 0.96969 0.93124 1.20997 0.99358 1.20615 1.13435 0.89456 1.25040 0.95521 0.93525 0.97567 1.69916 1.04729 1.38399 1.37764 0.86931 0.79270 0.79842 0.84677 1.19578 1.21096 1.18079 1.22609 0.89988 1.03375 0.99659 1.22793 1.01603 0.94267 1.02143 1.23167 1.02317 0.94449 1.03774 0.93066 0.92150 0.92468 0.91665 0.91776 0.90542 0.92558 0.89170 0.93266 0.92875 0.93244 0.92400 0.91018 0.91547 0.92006 0.88140 0.89120 0.89530 0.90154 0.87779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.22 37.16 0.34 -1.38 16 2 C -0.12 -1.30 5.09 -26.73 -0.14 -1.44 16 3 C -0.07 -0.94 1.39 -90.62 -0.13 -1.07 16 4 C -0.14 -2.10 4.98 -26.73 -0.13 -2.23 16 5 C -0.14 -1.78 9.52 37.16 0.35 -1.42 16 6 C -0.09 -1.50 1.99 -91.77 -0.18 -1.68 16 7 H 0.10 1.63 6.29 -51.92 -0.33 1.31 16 8 C -0.14 -1.92 8.77 37.16 0.33 -1.59 16 9 C 0.45 9.31 5.80 36.00 0.21 9.52 16 10 O -0.52 -11.40 10.62 -18.75 -0.20 -11.60 16 11 O -0.35 -8.27 8.57 -39.25 -0.34 -8.61 16 12 C 0.20 5.05 1.52 -27.89 -0.04 5.00 16 13 H 0.05 1.33 5.42 -51.93 -0.28 1.05 16 14 C -0.51 -14.27 9.31 -34.45 -0.32 -14.59 16 15 H 0.09 2.59 7.99 -52.48 -0.42 2.17 16 16 C 0.09 2.59 5.47 -17.82 -0.10 2.49 16 17 N -0.87 -25.84 13.96 55.43 0.77 -25.07 16 18 Si 0.87 21.95 26.22 -169.99 -4.46 17.49 16 19 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.26 -6.56 6.38 56.52 0.36 -6.20 16 22 C -0.14 -2.94 5.29 -90.62 -0.48 -3.42 16 23 C -0.17 -3.18 10.18 -26.70 -0.27 -3.46 16 24 C -0.20 -3.72 9.82 -26.70 -0.26 -3.99 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.69 6.17 -51.93 -0.32 0.37 16 27 H 0.06 0.63 6.58 -51.93 -0.34 0.29 16 28 H 0.06 0.65 6.57 -51.92 -0.34 0.31 16 29 H 0.06 0.63 6.60 -51.93 -0.34 0.29 16 30 H 0.08 1.10 8.10 -51.92 -0.42 0.68 16 31 H 0.06 0.82 6.34 -51.93 -0.33 0.49 16 32 H 0.09 1.66 5.42 -51.93 -0.28 1.38 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.53 6.81 -51.93 -0.35 0.17 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 1.05 8.11 -51.93 -0.42 0.63 16 38 H 0.07 0.72 6.50 -51.94 -0.34 0.39 16 39 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.10 2.12 8.14 -51.93 -0.42 1.70 16 41 H 0.09 1.73 8.08 -51.93 -0.42 1.31 16 42 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 44 H 0.10 2.07 5.59 -51.93 -0.29 1.78 16 LS Contribution 334.19 15.07 5.04 5.04 Total: -1.00 -29.68 334.19 -7.37 -37.04 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -7.36 Total: 4.96 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: -0.82 Total: -19.26 kcal Atomic # 7 Polarization: -25.84 SS G_CDS: 0.77 Total: -25.07 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.54 Total: -20.21 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.46 Total: 17.49 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.68 -7.37 -37.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346707729.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.178 kcal (2) G-P(sol) polarization free energy of solvation -29.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds