Wall clock time and date at job start Mon Mar 30 2020 00:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47110 * 2 1 4 4 C 1.53003 * 109.47109 * 296.90498 * 3 2 1 5 5 C 1.52995 * 109.47326 * 294.86141 * 4 3 2 6 6 C 1.52996 * 109.47228 * 56.90833 * 3 2 1 7 7 H 1.09009 * 109.46884 * 300.00082 * 6 3 2 8 8 C 1.53003 * 109.47049 * 59.99573 * 6 3 2 9 9 C 1.50695 * 109.47407 * 179.97438 * 6 3 2 10 10 O 1.20824 * 120.00114 * 0.02562 * 9 6 3 11 11 O 1.34226 * 120.00065 * 179.97438 * 9 6 3 12 12 C 1.45204 * 117.00177 * 179.97438 * 11 9 6 13 13 H 1.09002 * 109.47031 * 29.99912 * 12 11 9 14 14 C 1.50691 * 109.47289 * 149.99946 * 12 11 9 15 15 H 1.08010 * 120.00152 * 114.56219 * 14 12 11 16 16 C 1.37876 * 120.00452 * 294.83985 * 14 12 11 17 17 N 1.31513 * 120.00836 * 172.15018 * 16 14 12 18 18 Si 1.86806 * 119.99614 * 352.14893 * 16 14 12 19 19 H 1.48500 * 109.46902 * 89.53365 * 18 16 14 20 20 H 1.48500 * 109.47115 * 209.53098 * 18 16 14 21 21 H 1.48492 * 109.47279 * 329.53208 * 18 16 14 22 22 C 1.53005 * 109.47225 * 270.00398 * 12 11 9 23 23 C 1.52994 * 117.49817 * 134.14822 * 22 12 11 24 24 C 1.52997 * 117.49896 * 65.48887 * 22 12 11 25 25 H 1.09004 * 109.47186 * 183.61005 * 1 2 3 26 26 H 1.09000 * 109.47040 * 303.60938 * 1 2 3 27 27 H 1.09002 * 109.46884 * 63.61055 * 1 2 3 28 28 H 1.09008 * 109.46974 * 240.00424 * 2 1 3 29 29 H 1.08996 * 109.47436 * 120.00393 * 2 1 3 30 30 H 1.09007 * 109.46800 * 176.90959 * 3 2 1 31 31 H 1.09001 * 109.46724 * 54.86406 * 4 3 2 32 32 H 1.09003 * 109.46875 * 174.86209 * 4 3 2 33 33 H 1.08999 * 109.47468 * 186.15072 * 5 4 3 34 34 H 1.09004 * 109.47543 * 306.15558 * 5 4 3 35 35 H 1.09004 * 109.47220 * 66.15468 * 5 4 3 36 36 H 1.08995 * 109.46674 * 60.00586 * 8 6 3 37 37 H 1.08999 * 109.46517 * 179.97438 * 8 6 3 38 38 H 1.08989 * 109.46990 * 300.00308 * 8 6 3 39 39 H 0.96992 * 120.00517 * 179.97438 * 17 16 14 40 40 H 1.08997 * 115.54373 * 279.82052 * 22 12 11 41 41 H 1.08993 * 117.50247 * 359.97438 * 23 22 12 42 42 H 1.09002 * 117.49304 * 145.02135 * 23 22 12 43 43 H 1.09001 * 117.49938 * 214.98289 * 24 22 12 44 44 H 1.09003 * 117.50157 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5946 2.1409 -1.2864 5 6 2.2696 1.4761 -2.4877 6 6 1.4675 2.1858 1.2085 7 1 0.3788 2.1853 1.1530 8 6 1.9129 1.4873 2.4948 9 6 1.9703 3.6064 1.2089 10 8 2.7102 3.9857 0.3322 11 8 1.5953 4.4508 2.1825 12 6 2.1187 5.8038 2.1196 13 1 2.2867 6.0803 1.0787 14 6 1.1274 6.7552 2.7384 15 1 1.3811 7.2858 3.6443 16 6 -0.1058 6.9441 2.1513 17 7 -1.0268 7.6512 2.7688 18 14 -0.4684 6.1956 0.4786 19 1 -1.0281 4.8318 0.6575 20 1 -1.4523 7.0441 -0.2405 21 1 0.7869 6.1160 -0.3106 22 6 3.4410 5.8753 2.8860 23 6 4.6082 6.6017 2.2146 24 6 4.6223 5.0756 2.3328 25 1 -0.3634 -1.0257 0.0647 26 1 -0.3633 0.5688 0.8559 27 1 -0.3633 0.4568 -0.9206 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.1287 1.4429 0.0554 31 1 0.5122 2.0605 -1.3873 32 1 1.8787 3.1925 -1.2459 33 1 2.0396 2.0399 -3.3918 34 1 3.3487 1.4592 -2.3348 35 1 1.9015 0.4555 -2.5925 36 1 3.0014 1.4879 2.5502 37 1 1.5054 2.0173 3.3557 38 1 1.5496 0.4598 2.4947 39 1 -1.8942 7.7844 2.3557 40 1 3.3526 5.9583 3.9692 41 1 4.4343 7.0283 1.2269 42 1 5.2880 7.1623 2.8563 43 1 5.3113 4.6329 3.0521 44 1 4.4573 4.4982 1.4231 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346707729.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:59 Heat of formation + Delta-G solvation = -102.388990 kcal Electronic energy + Delta-G solvation = -22378.987386 eV Core-core repulsion = 19295.958219 eV Total energy + Delta-G solvation = -3083.029167 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.71264 -39.27259 -37.78820 -36.69197 -34.89974 -33.46100 -31.86572 -30.48281 -27.45032 -25.92188 -24.98358 -23.84160 -23.23274 -21.97475 -21.07836 -19.83276 -19.26600 -18.62877 -17.57814 -17.37883 -16.53326 -16.24695 -15.74692 -15.41944 -15.08764 -14.82761 -14.30211 -14.22476 -13.92042 -13.66966 -13.62141 -13.38995 -13.25744 -13.12010 -12.80244 -12.72295 -12.55157 -12.32903 -12.23753 -12.09607 -11.91290 -11.86404 -11.53624 -11.33587 -11.25390 -11.12453 -11.06975 -11.02615 -10.82962 -10.58264 -8.54618 -6.63123 1.14772 1.17764 1.28538 1.41520 1.96778 2.14872 2.96165 3.00809 3.60326 3.79868 3.85258 3.93004 4.06105 4.11431 4.22490 4.27451 4.32214 4.40191 4.48921 4.50685 4.57779 4.68639 4.73182 4.82105 4.85038 4.87570 4.96045 4.98058 5.01549 5.06056 5.11348 5.22342 5.24882 5.29430 5.31584 5.32831 5.36689 5.40767 5.46995 5.64778 5.95644 6.14550 6.46728 7.04499 7.10917 8.59422 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.016726 B = 0.007716 C = 0.006514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.668238 B = 3627.741807 C = 4297.415542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.112 4.112 3 C -0.062 4.062 4 C -0.144 4.144 5 C -0.138 4.138 6 C -0.091 4.091 7 H 0.101 0.899 8 C -0.137 4.137 9 C 0.442 3.558 10 O -0.535 6.535 11 O -0.366 6.366 12 C 0.213 3.787 13 H 0.031 0.969 14 C -0.521 4.521 15 H 0.059 0.941 16 C 0.048 3.952 17 N -0.912 5.912 18 Si 0.916 3.084 19 H -0.261 1.261 20 H -0.272 1.272 21 H -0.266 1.266 22 C -0.168 4.168 23 C -0.160 4.160 24 C -0.177 4.177 25 H 0.070 0.930 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.100 0.900 39 H 0.275 0.725 40 H 0.098 0.902 41 H 0.081 0.919 42 H 0.117 0.883 43 H 0.111 0.889 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.173 -16.614 -5.731 18.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.149 4.149 3 C -0.081 4.081 4 C -0.181 4.181 5 C -0.195 4.195 6 C -0.110 4.110 7 H 0.119 0.881 8 C -0.194 4.194 9 C 0.287 3.713 10 O -0.427 6.427 11 O -0.283 6.283 12 C 0.161 3.839 13 H 0.049 0.951 14 C -0.557 4.557 15 H 0.077 0.923 16 C -0.155 4.155 17 N -0.549 5.549 18 Si 0.740 3.260 19 H -0.185 1.185 20 H -0.197 1.197 21 H -0.191 1.191 22 C -0.187 4.187 23 C -0.197 4.197 24 C -0.214 4.214 25 H 0.089 0.911 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.118 0.882 39 H 0.085 0.915 40 H 0.117 0.883 41 H 0.100 0.900 42 H 0.135 0.865 43 H 0.130 0.870 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.208 -16.373 -5.959 18.496 hybrid contribution -0.570 0.674 -0.549 1.040 sum 5.638 -15.698 -6.508 17.905 Atomic orbital electron populations 1.21950 0.95998 1.02330 1.01670 1.21597 0.96092 0.93662 1.03549 1.21037 1.00200 0.95434 0.91411 1.21894 1.00174 1.00472 0.95571 1.21679 1.00400 1.00918 0.96529 1.21413 1.02500 0.87004 1.00057 0.88119 1.21769 1.01996 1.01645 0.93944 1.24484 0.77798 0.89937 0.79037 1.90454 1.35940 1.78862 1.37449 1.86875 1.67386 1.25345 1.48696 1.20270 0.91277 0.76552 0.95779 0.95146 1.21161 1.00165 1.21892 1.12491 0.92317 1.25663 0.95499 0.94045 1.00333 1.69992 1.05431 1.40188 1.39325 0.86160 0.78865 0.79817 0.81113 1.18525 1.19708 1.19081 1.22474 0.89574 1.07275 0.99346 1.22925 1.00087 0.94843 1.01843 1.23158 1.00525 0.94371 1.03350 0.91066 0.93141 0.93099 0.90072 0.90046 0.90959 0.92451 0.93197 0.93269 0.92882 0.90900 0.91917 0.92453 0.88154 0.91531 0.88338 0.90011 0.86479 0.87035 0.89155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 9.22 71.98 0.66 -2.29 16 2 C -0.11 -2.00 5.09 30.59 0.16 -1.85 16 3 C -0.06 -1.59 1.39 -10.79 -0.01 -1.60 16 4 C -0.14 -4.12 4.98 30.59 0.15 -3.96 16 5 C -0.14 -3.10 9.52 71.98 0.69 -2.42 16 6 C -0.09 -2.78 1.99 -11.54 -0.02 -2.80 16 7 H 0.10 3.12 6.29 -2.38 -0.01 3.11 16 8 C -0.14 -3.38 8.77 71.98 0.63 -2.75 16 9 C 0.44 18.18 5.80 71.23 0.41 18.60 16 10 O -0.54 -23.47 10.62 21.97 0.23 -23.23 16 11 O -0.37 -17.50 8.57 -51.38 -0.44 -17.94 16 12 C 0.21 10.79 1.52 29.85 0.05 10.84 16 13 H 0.03 1.66 5.42 -2.39 -0.01 1.65 16 14 C -0.52 -30.38 9.31 25.60 0.24 -30.15 16 15 H 0.06 3.67 7.99 -2.91 -0.02 3.64 16 16 C 0.05 2.81 5.47 84.65 0.46 3.28 16 17 N -0.91 -55.60 13.96 21.45 0.30 -55.30 16 18 Si 0.92 46.30 26.22 68.60 1.80 48.10 16 19 H -0.26 -12.60 7.11 99.48 0.71 -11.89 16 20 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 21 H -0.27 -13.73 6.38 99.48 0.64 -13.09 16 22 C -0.17 -7.20 5.29 -10.79 -0.06 -7.26 16 23 C -0.16 -5.78 10.18 30.62 0.31 -5.46 16 24 C -0.18 -6.31 9.82 30.62 0.30 -6.01 16 25 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.05 1.02 6.17 -2.39 -0.01 1.00 16 27 H 0.05 0.98 6.58 -2.39 -0.02 0.97 16 28 H 0.08 1.25 6.57 -2.38 -0.02 1.23 16 29 H 0.08 1.22 6.60 -2.39 -0.02 1.20 16 30 H 0.07 1.92 8.10 -2.38 -0.02 1.90 16 31 H 0.06 1.59 6.34 -2.39 -0.02 1.58 16 32 H 0.05 1.84 5.42 -2.39 -0.01 1.83 16 33 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.07 1.29 6.81 -2.39 -0.02 1.28 16 36 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.06 1.59 8.11 -2.39 -0.02 1.57 16 38 H 0.10 1.81 6.50 -2.39 -0.02 1.79 16 39 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 40 H 0.10 4.21 8.14 -2.39 -0.02 4.19 16 41 H 0.08 3.09 8.08 -2.39 -0.02 3.07 16 42 H 0.12 3.49 8.14 -2.39 -0.02 3.47 16 43 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 44 H 0.09 3.50 5.59 -2.39 -0.01 3.49 16 Total: -1.00 -66.58 334.19 6.75 -59.83 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: 0.90 Total: 22.39 kcal Atomic # 6 Polarization: -37.81 SS G_CDS: 3.97 Total: -33.84 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: 0.30 Total: -55.30 kcal Atomic # 8 Polarization: -40.96 SS G_CDS: -0.21 Total: -41.17 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.80 Total: 48.10 kcal Total: -66.58 6.75 -59.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346707729.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.561 kcal (2) G-P(sol) polarization free energy of solvation -66.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds