Wall clock time and date at job start Mon Mar 30 2020 00:44:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52998 * 109.47110 * 2 1
4 4 C 1.53003 * 109.47109 * 296.90498 * 3 2 1
5 5 C 1.52995 * 109.47326 * 294.86141 * 4 3 2
6 6 C 1.52996 * 109.47228 * 56.90833 * 3 2 1
7 7 H 1.09009 * 109.46884 * 300.00082 * 6 3 2
8 8 C 1.53003 * 109.47049 * 59.99573 * 6 3 2
9 9 C 1.50695 * 109.47407 * 179.97438 * 6 3 2
10 10 O 1.20824 * 120.00114 * 0.02562 * 9 6 3
11 11 O 1.34226 * 120.00065 * 179.97438 * 9 6 3
12 12 C 1.45204 * 117.00177 * 179.97438 * 11 9 6
13 13 H 1.09002 * 109.47031 * 29.99912 * 12 11 9
14 14 C 1.50691 * 109.47289 * 149.99946 * 12 11 9
15 15 H 1.08010 * 120.00152 * 114.56219 * 14 12 11
16 16 C 1.37876 * 120.00452 * 294.83985 * 14 12 11
17 17 N 1.31513 * 120.00836 * 172.15018 * 16 14 12
18 18 Si 1.86806 * 119.99614 * 352.14893 * 16 14 12
19 19 H 1.48500 * 109.46902 * 89.53365 * 18 16 14
20 20 H 1.48500 * 109.47115 * 209.53098 * 18 16 14
21 21 H 1.48492 * 109.47279 * 329.53208 * 18 16 14
22 22 C 1.53005 * 109.47225 * 270.00398 * 12 11 9
23 23 C 1.52994 * 117.49817 * 134.14822 * 22 12 11
24 24 C 1.52997 * 117.49896 * 65.48887 * 22 12 11
25 25 H 1.09004 * 109.47186 * 183.61005 * 1 2 3
26 26 H 1.09000 * 109.47040 * 303.60938 * 1 2 3
27 27 H 1.09002 * 109.46884 * 63.61055 * 1 2 3
28 28 H 1.09008 * 109.46974 * 240.00424 * 2 1 3
29 29 H 1.08996 * 109.47436 * 120.00393 * 2 1 3
30 30 H 1.09007 * 109.46800 * 176.90959 * 3 2 1
31 31 H 1.09001 * 109.46724 * 54.86406 * 4 3 2
32 32 H 1.09003 * 109.46875 * 174.86209 * 4 3 2
33 33 H 1.08999 * 109.47468 * 186.15072 * 5 4 3
34 34 H 1.09004 * 109.47543 * 306.15558 * 5 4 3
35 35 H 1.09004 * 109.47220 * 66.15468 * 5 4 3
36 36 H 1.08995 * 109.46674 * 60.00586 * 8 6 3
37 37 H 1.08999 * 109.46517 * 179.97438 * 8 6 3
38 38 H 1.08989 * 109.46990 * 300.00308 * 8 6 3
39 39 H 0.96992 * 120.00517 * 179.97438 * 17 16 14
40 40 H 1.08997 * 115.54373 * 279.82052 * 22 12 11
41 41 H 1.08993 * 117.50247 * 359.97438 * 23 22 12
42 42 H 1.09002 * 117.49304 * 145.02135 * 23 22 12
43 43 H 1.09001 * 117.49938 * 214.98289 * 24 22 12
44 44 H 1.09003 * 117.50157 * 359.97438 * 24 22 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 1.5946 2.1409 -1.2864
5 6 2.2696 1.4761 -2.4877
6 6 1.4675 2.1858 1.2085
7 1 0.3788 2.1853 1.1530
8 6 1.9129 1.4873 2.4948
9 6 1.9703 3.6064 1.2089
10 8 2.7102 3.9857 0.3322
11 8 1.5953 4.4508 2.1825
12 6 2.1187 5.8038 2.1196
13 1 2.2867 6.0803 1.0787
14 6 1.1274 6.7552 2.7384
15 1 1.3811 7.2858 3.6443
16 6 -0.1058 6.9441 2.1513
17 7 -1.0268 7.6512 2.7688
18 14 -0.4684 6.1956 0.4786
19 1 -1.0281 4.8318 0.6575
20 1 -1.4523 7.0441 -0.2405
21 1 0.7869 6.1160 -0.3106
22 6 3.4410 5.8753 2.8860
23 6 4.6082 6.6017 2.2146
24 6 4.6223 5.0756 2.3328
25 1 -0.3634 -1.0257 0.0647
26 1 -0.3633 0.5688 0.8559
27 1 -0.3633 0.4568 -0.9206
28 1 1.8933 -0.5138 -0.8901
29 1 1.8934 -0.5139 0.8899
30 1 3.1287 1.4429 0.0554
31 1 0.5122 2.0605 -1.3873
32 1 1.8787 3.1925 -1.2459
33 1 2.0396 2.0399 -3.3918
34 1 3.3487 1.4592 -2.3348
35 1 1.9015 0.4555 -2.5925
36 1 3.0014 1.4879 2.5502
37 1 1.5054 2.0173 3.3557
38 1 1.5496 0.4598 2.4947
39 1 -1.8942 7.7844 2.3557
40 1 3.3526 5.9583 3.9692
41 1 4.4343 7.0283 1.2269
42 1 5.2880 7.1623 2.8563
43 1 5.3113 4.6329 3.0521
44 1 4.4573 4.4982 1.4231
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001346707729.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:44:59
Heat of formation + Delta-G solvation = -102.388990 kcal
Electronic energy + Delta-G solvation = -22378.987386 eV
Core-core repulsion = 19295.958219 eV
Total energy + Delta-G solvation = -3083.029167 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.183 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-41.71264 -39.27259 -37.78820 -36.69197 -34.89974 -33.46100 -31.86572 -30.48281
-27.45032 -25.92188 -24.98358 -23.84160 -23.23274 -21.97475 -21.07836 -19.83276
-19.26600 -18.62877 -17.57814 -17.37883 -16.53326 -16.24695 -15.74692 -15.41944
-15.08764 -14.82761 -14.30211 -14.22476 -13.92042 -13.66966 -13.62141 -13.38995
-13.25744 -13.12010 -12.80244 -12.72295 -12.55157 -12.32903 -12.23753 -12.09607
-11.91290 -11.86404 -11.53624 -11.33587 -11.25390 -11.12453 -11.06975 -11.02615
-10.82962 -10.58264 -8.54618 -6.63123 1.14772 1.17764 1.28538 1.41520
1.96778 2.14872 2.96165 3.00809 3.60326 3.79868 3.85258 3.93004
4.06105 4.11431 4.22490 4.27451 4.32214 4.40191 4.48921 4.50685
4.57779 4.68639 4.73182 4.82105 4.85038 4.87570 4.96045 4.98058
5.01549 5.06056 5.11348 5.22342 5.24882 5.29430 5.31584 5.32831
5.36689 5.40767 5.46995 5.64778 5.95644 6.14550 6.46728 7.04499
7.10917 8.59422
Molecular weight = 268.18amu
Principal moments of inertia in cm(-1)
A = 0.016726 B = 0.007716 C = 0.006514
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1673.668238 B = 3627.741807 C = 4297.415542
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C -0.112 4.112
3 C -0.062 4.062
4 C -0.144 4.144
5 C -0.138 4.138
6 C -0.091 4.091
7 H 0.101 0.899
8 C -0.137 4.137
9 C 0.442 3.558
10 O -0.535 6.535
11 O -0.366 6.366
12 C 0.213 3.787
13 H 0.031 0.969
14 C -0.521 4.521
15 H 0.059 0.941
16 C 0.048 3.952
17 N -0.912 5.912
18 Si 0.916 3.084
19 H -0.261 1.261
20 H -0.272 1.272
21 H -0.266 1.266
22 C -0.168 4.168
23 C -0.160 4.160
24 C -0.177 4.177
25 H 0.070 0.930
26 H 0.050 0.950
27 H 0.050 0.950
28 H 0.081 0.919
29 H 0.081 0.919
30 H 0.072 0.928
31 H 0.057 0.943
32 H 0.049 0.951
33 H 0.048 0.952
34 H 0.052 0.948
35 H 0.072 0.928
36 H 0.062 0.938
37 H 0.056 0.944
38 H 0.100 0.900
39 H 0.275 0.725
40 H 0.098 0.902
41 H 0.081 0.919
42 H 0.117 0.883
43 H 0.111 0.889
44 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.173 -16.614 -5.731 18.628
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C -0.149 4.149
3 C -0.081 4.081
4 C -0.181 4.181
5 C -0.195 4.195
6 C -0.110 4.110
7 H 0.119 0.881
8 C -0.194 4.194
9 C 0.287 3.713
10 O -0.427 6.427
11 O -0.283 6.283
12 C 0.161 3.839
13 H 0.049 0.951
14 C -0.557 4.557
15 H 0.077 0.923
16 C -0.155 4.155
17 N -0.549 5.549
18 Si 0.740 3.260
19 H -0.185 1.185
20 H -0.197 1.197
21 H -0.191 1.191
22 C -0.187 4.187
23 C -0.197 4.197
24 C -0.214 4.214
25 H 0.089 0.911
26 H 0.069 0.931
27 H 0.069 0.931
28 H 0.099 0.901
29 H 0.100 0.900
30 H 0.090 0.910
31 H 0.075 0.925
32 H 0.068 0.932
33 H 0.067 0.933
34 H 0.071 0.929
35 H 0.091 0.909
36 H 0.081 0.919
37 H 0.075 0.925
38 H 0.118 0.882
39 H 0.085 0.915
40 H 0.117 0.883
41 H 0.100 0.900
42 H 0.135 0.865
43 H 0.130 0.870
44 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges 6.208 -16.373 -5.959 18.496
hybrid contribution -0.570 0.674 -0.549 1.040
sum 5.638 -15.698 -6.508 17.905
Atomic orbital electron populations
1.21950 0.95998 1.02330 1.01670 1.21597 0.96092 0.93662 1.03549
1.21037 1.00200 0.95434 0.91411 1.21894 1.00174 1.00472 0.95571
1.21679 1.00400 1.00918 0.96529 1.21413 1.02500 0.87004 1.00057
0.88119 1.21769 1.01996 1.01645 0.93944 1.24484 0.77798 0.89937
0.79037 1.90454 1.35940 1.78862 1.37449 1.86875 1.67386 1.25345
1.48696 1.20270 0.91277 0.76552 0.95779 0.95146 1.21161 1.00165
1.21892 1.12491 0.92317 1.25663 0.95499 0.94045 1.00333 1.69992
1.05431 1.40188 1.39325 0.86160 0.78865 0.79817 0.81113 1.18525
1.19708 1.19081 1.22474 0.89574 1.07275 0.99346 1.22925 1.00087
0.94843 1.01843 1.23158 1.00525 0.94371 1.03350 0.91066 0.93141
0.93099 0.90072 0.90046 0.90959 0.92451 0.93197 0.93269 0.92882
0.90900 0.91917 0.92453 0.88154 0.91531 0.88338 0.90011 0.86479
0.87035 0.89155
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.95 9.22 71.98 0.66 -2.29 16
2 C -0.11 -2.00 5.09 30.59 0.16 -1.85 16
3 C -0.06 -1.59 1.39 -10.79 -0.01 -1.60 16
4 C -0.14 -4.12 4.98 30.59 0.15 -3.96 16
5 C -0.14 -3.10 9.52 71.98 0.69 -2.42 16
6 C -0.09 -2.78 1.99 -11.54 -0.02 -2.80 16
7 H 0.10 3.12 6.29 -2.38 -0.01 3.11 16
8 C -0.14 -3.38 8.77 71.98 0.63 -2.75 16
9 C 0.44 18.18 5.80 71.23 0.41 18.60 16
10 O -0.54 -23.47 10.62 21.97 0.23 -23.23 16
11 O -0.37 -17.50 8.57 -51.38 -0.44 -17.94 16
12 C 0.21 10.79 1.52 29.85 0.05 10.84 16
13 H 0.03 1.66 5.42 -2.39 -0.01 1.65 16
14 C -0.52 -30.38 9.31 25.60 0.24 -30.15 16
15 H 0.06 3.67 7.99 -2.91 -0.02 3.64 16
16 C 0.05 2.81 5.47 84.65 0.46 3.28 16
17 N -0.91 -55.60 13.96 21.45 0.30 -55.30 16
18 Si 0.92 46.30 26.22 68.60 1.80 48.10 16
19 H -0.26 -12.60 7.11 99.48 0.71 -11.89 16
20 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16
21 H -0.27 -13.73 6.38 99.48 0.64 -13.09 16
22 C -0.17 -7.20 5.29 -10.79 -0.06 -7.26 16
23 C -0.16 -5.78 10.18 30.62 0.31 -5.46 16
24 C -0.18 -6.31 9.82 30.62 0.30 -6.01 16
25 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16
26 H 0.05 1.02 6.17 -2.39 -0.01 1.00 16
27 H 0.05 0.98 6.58 -2.39 -0.02 0.97 16
28 H 0.08 1.25 6.57 -2.38 -0.02 1.23 16
29 H 0.08 1.22 6.60 -2.39 -0.02 1.20 16
30 H 0.07 1.92 8.10 -2.38 -0.02 1.90 16
31 H 0.06 1.59 6.34 -2.39 -0.02 1.58 16
32 H 0.05 1.84 5.42 -2.39 -0.01 1.83 16
33 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16
34 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16
35 H 0.07 1.29 6.81 -2.39 -0.02 1.28 16
36 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16
37 H 0.06 1.59 8.11 -2.39 -0.02 1.57 16
38 H 0.10 1.81 6.50 -2.39 -0.02 1.79 16
39 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16
40 H 0.10 4.21 8.14 -2.39 -0.02 4.19 16
41 H 0.08 3.09 8.08 -2.39 -0.02 3.07 16
42 H 0.12 3.49 8.14 -2.39 -0.02 3.47 16
43 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16
44 H 0.09 3.50 5.59 -2.39 -0.01 3.49 16
Total: -1.00 -66.58 334.19 6.75 -59.83
By element:
Atomic # 1 Polarization: 21.49 SS G_CDS: 0.90 Total: 22.39 kcal
Atomic # 6 Polarization: -37.81 SS G_CDS: 3.97 Total: -33.84 kcal
Atomic # 7 Polarization: -55.60 SS G_CDS: 0.30 Total: -55.30 kcal
Atomic # 8 Polarization: -40.96 SS G_CDS: -0.21 Total: -41.17 kcal
Atomic # 14 Polarization: 46.30 SS G_CDS: 1.80 Total: 48.10 kcal
Total: -66.58 6.75 -59.83 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001346707729.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -42.561 kcal
(2) G-P(sol) polarization free energy of solvation -66.582 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.143 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.754 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.828 kcal
(6) G-S(sol) free energy of system = (1) + (5) -102.389 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds