Wall clock time and date at job start Mon Mar 30 2020 00:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46866 * 2 1 4 4 C 1.52998 * 109.47335 * 65.00188 * 3 2 1 5 5 C 1.52999 * 109.47226 * 186.37310 * 4 3 2 6 6 C 1.53000 * 109.46974 * 185.00330 * 3 2 1 7 7 H 1.09003 * 109.47084 * 186.88808 * 6 3 2 8 8 C 1.53000 * 109.47156 * 306.88811 * 6 3 2 9 9 C 1.50698 * 109.47294 * 66.89115 * 6 3 2 10 10 O 1.20825 * 120.00245 * 357.50345 * 9 6 3 11 11 O 1.34226 * 120.00034 * 177.50996 * 9 6 3 12 12 C 1.45205 * 117.00312 * 185.08035 * 11 9 6 13 13 H 1.09006 * 109.46505 * 336.49523 * 12 11 9 14 14 C 1.50697 * 109.47122 * 216.49927 * 12 11 9 15 15 H 1.08000 * 120.00063 * 359.97438 * 14 12 11 16 16 C 1.37882 * 120.00147 * 179.97438 * 14 12 11 17 17 N 1.31512 * 119.99698 * 0.02562 * 16 14 12 18 18 Si 1.86792 * 120.00052 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47336 * 60.00308 * 18 16 14 20 20 H 1.48503 * 109.46778 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47294 * 299.99934 * 18 16 14 22 22 C 1.52997 * 109.47219 * 96.49617 * 12 11 9 23 23 C 1.52998 * 117.50233 * 8.23125 * 22 12 11 24 24 C 1.52996 * 117.49817 * 299.57143 * 22 12 11 25 25 H 1.08998 * 109.47349 * 60.00376 * 1 2 3 26 26 H 1.09005 * 109.46590 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46819 * 299.99742 * 1 2 3 28 28 H 1.09007 * 109.46879 * 240.00447 * 2 1 3 29 29 H 1.08998 * 109.47557 * 120.00381 * 2 1 3 30 30 H 1.09003 * 109.47139 * 305.00247 * 3 2 1 31 31 H 1.08998 * 109.46676 * 306.37710 * 4 3 2 32 32 H 1.09002 * 109.46923 * 66.37394 * 4 3 2 33 33 H 1.09003 * 109.46842 * 182.97306 * 5 4 3 34 34 H 1.08997 * 109.47446 * 302.97454 * 5 4 3 35 35 H 1.09005 * 109.46790 * 62.97723 * 5 4 3 36 36 H 1.09007 * 109.46970 * 300.00380 * 8 6 3 37 37 H 1.09003 * 109.47127 * 60.00023 * 8 6 3 38 38 H 1.08999 * 109.47241 * 180.02562 * 8 6 3 39 39 H 0.96999 * 120.00258 * 179.97438 * 17 16 14 40 40 H 1.08999 * 115.54607 * 153.90795 * 22 12 11 41 41 H 1.09005 * 117.49819 * 0.02562 * 23 22 12 42 42 H 1.09000 * 117.49891 * 145.01608 * 23 22 12 43 43 H 1.09004 * 117.50254 * 214.98292 * 24 22 12 44 44 H 1.08994 * 117.50409 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6353 2.1266 1.3073 5 6 2.0044 3.6099 1.2423 6 6 3.5648 1.4444 -0.1258 7 1 3.9382 2.4611 -0.0032 8 6 4.1669 0.5460 0.9564 9 6 3.9574 0.9256 -1.4851 10 8 3.1074 0.5466 -2.2557 11 8 5.2513 0.8844 -1.8398 12 6 5.5488 0.4807 -3.2025 13 1 4.7226 -0.1127 -3.5942 14 6 6.8106 -0.3432 -3.2181 15 1 7.3365 -0.5430 -2.2962 16 6 7.2936 -0.8419 -4.4094 17 7 6.6534 -0.5982 -5.5320 18 14 8.8579 -1.8625 -4.4288 19 1 8.6722 -3.0694 -3.5838 20 1 9.1621 -2.2755 -5.8224 21 1 9.9835 -1.0535 -3.8959 22 6 5.7410 1.7244 -4.0725 23 6 5.7872 3.0807 -3.3659 24 6 4.5608 2.6904 -4.1945 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6053 1.9816 -0.8418 31 1 0.5597 2.0257 1.4522 32 1 2.1596 1.6578 2.1401 33 1 1.7644 4.0860 2.1931 34 1 3.0716 3.7105 1.0447 35 1 1.4400 4.0901 0.4429 36 1 3.8829 0.9213 1.9396 37 1 3.7935 -0.4707 0.8338 38 1 5.2532 0.5477 0.8671 39 1 6.9934 -0.9487 -6.3701 40 1 6.3753 1.5916 -4.9489 41 1 5.6812 3.0868 -2.2810 42 1 6.4518 3.8402 -3.7775 43 1 4.4189 3.1935 -5.1510 44 1 3.6474 2.4397 -3.6553 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346707731.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:02 Heat of formation + Delta-G solvation = -92.637936 kcal Electronic energy + Delta-G solvation = -22003.499768 eV Core-core repulsion = 18920.893439 eV Total energy + Delta-G solvation = -3082.606330 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.08898 -37.84500 -36.14488 -34.62126 -32.80845 -31.88663 -31.55852 -27.86932 -26.26339 -24.58178 -23.20565 -22.60874 -21.51752 -20.89122 -19.13942 -18.46819 -17.02733 -16.58722 -15.92802 -15.45001 -14.77553 -14.63919 -14.42866 -13.99303 -13.93633 -13.53210 -13.08012 -12.70693 -12.43884 -12.20669 -12.07575 -11.77246 -11.57300 -11.48103 -11.30884 -11.19542 -11.07268 -10.93485 -10.88955 -10.59906 -10.36983 -10.31840 -10.24014 -10.09461 -10.08313 -9.49334 -9.41443 -9.07749 -8.52011 -8.42372 -6.17253 -4.24094 3.05633 3.26972 3.30745 3.32713 3.69552 4.34300 4.74514 4.83445 4.90376 5.03485 5.14984 5.20742 5.33389 5.41058 5.44111 5.53675 5.55511 5.71710 5.77514 5.82779 5.88461 5.94432 5.98609 6.02430 6.05867 6.09891 6.15561 6.18527 6.23543 6.29422 6.43337 6.43849 6.59518 6.59781 6.65390 6.96613 6.99993 7.19589 7.58089 7.64659 7.89023 8.14292 8.66877 8.91600 9.40400 10.89923 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.023519 B = 0.005298 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.234116 B = 5284.026971 C = 5602.079525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C -0.070 4.070 4 C -0.122 4.122 5 C -0.157 4.157 6 C -0.085 4.085 7 H 0.101 0.899 8 C -0.146 4.146 9 C 0.456 3.544 10 O -0.515 6.515 11 O -0.352 6.352 12 C 0.244 3.756 13 H 0.056 0.944 14 C -0.519 4.519 15 H 0.068 0.932 16 C 0.064 3.936 17 N -0.886 5.886 18 Si 0.908 3.092 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.113 4.113 23 C -0.192 4.192 24 C -0.207 4.207 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.266 0.734 40 H 0.130 0.870 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.769 5.425 11.858 15.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C -0.089 4.089 4 C -0.159 4.159 5 C -0.214 4.214 6 C -0.104 4.104 7 H 0.118 0.882 8 C -0.203 4.203 9 C 0.299 3.701 10 O -0.405 6.405 11 O -0.268 6.268 12 C 0.191 3.809 13 H 0.073 0.927 14 C -0.557 4.557 15 H 0.086 0.914 16 C -0.138 4.138 17 N -0.523 5.523 18 Si 0.735 3.265 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.131 4.131 23 C -0.229 4.229 24 C -0.244 4.244 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.101 0.899 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.147 0.853 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.968 5.247 11.386 14.854 hybrid contribution 0.769 -0.404 -0.376 0.946 sum -7.199 4.843 11.010 14.018 Atomic orbital electron populations 1.21779 0.96306 1.01133 1.01321 1.21758 0.95583 0.96258 1.03010 1.21042 0.92519 0.97178 0.98129 1.21683 1.01371 0.95445 0.97412 1.21863 1.01894 0.96289 1.01360 1.21096 0.96837 1.01441 0.91025 0.88153 1.21830 1.01826 0.99534 0.97080 1.23384 0.82383 0.75314 0.89067 1.90560 1.51478 1.44744 1.53708 1.86479 1.25335 1.78009 1.37006 1.20115 0.97431 0.90851 0.72464 0.92680 1.20948 1.08598 1.31722 0.94385 0.91361 1.24894 0.97730 0.96174 0.95021 1.69966 1.39298 1.44745 0.98339 0.86393 0.82617 0.80357 0.77134 1.20000 1.21060 1.19937 1.23021 0.98821 0.89484 1.01814 1.22801 1.01111 1.00534 0.98492 1.22962 0.93485 1.07047 1.00870 0.92831 0.93186 0.93088 0.89913 0.92283 0.90457 0.91504 0.91657 0.92979 0.92371 0.92759 0.91622 0.91850 0.91199 0.92391 0.85277 0.89630 0.90433 0.90368 0.89920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.68 37.16 0.36 -1.37 16 2 C -0.13 -1.75 4.47 -26.73 -0.12 -1.87 16 3 C -0.07 -0.92 1.26 -90.62 -0.11 -1.04 16 4 C -0.12 -1.24 5.19 -26.73 -0.14 -1.38 16 5 C -0.16 -1.51 9.76 37.16 0.36 -1.14 16 6 C -0.08 -1.26 2.51 -91.77 -0.23 -1.49 16 7 H 0.10 1.37 6.28 -51.93 -0.33 1.05 16 8 C -0.15 -1.91 8.40 37.16 0.31 -1.60 16 9 C 0.46 9.23 6.11 36.00 0.22 9.45 16 10 O -0.52 -11.66 12.11 -18.75 -0.23 -11.88 16 11 O -0.35 -8.15 8.20 -39.25 -0.32 -8.47 16 12 C 0.24 6.43 2.47 -27.89 -0.07 6.36 16 13 H 0.06 1.63 6.89 -51.93 -0.36 1.27 16 14 C -0.52 -14.41 8.90 -34.44 -0.31 -14.72 16 15 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 16 C 0.06 1.76 5.19 -17.82 -0.09 1.67 16 17 N -0.89 -25.01 11.60 55.43 0.64 -24.37 16 18 Si 0.91 20.99 29.54 -169.99 -5.02 15.97 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 22 C -0.11 -2.78 5.27 -90.62 -0.48 -3.25 16 23 C -0.19 -4.01 9.88 -26.70 -0.26 -4.27 16 24 C -0.21 -4.46 10.00 -26.70 -0.27 -4.73 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.50 6.44 -51.93 -0.33 0.17 16 28 H 0.08 1.41 5.97 -51.93 -0.31 1.10 16 29 H 0.06 0.73 6.64 -51.93 -0.34 0.38 16 30 H 0.08 1.14 7.93 -51.93 -0.41 0.73 16 31 H 0.07 0.63 6.29 -51.93 -0.33 0.31 16 32 H 0.06 0.62 6.37 -51.93 -0.33 0.29 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.58 6.35 -51.93 -0.33 0.25 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.68 6.50 -51.93 -0.34 0.34 16 37 H 0.06 0.86 6.44 -51.93 -0.33 0.52 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.13 3.47 6.47 -51.93 -0.34 3.13 16 41 H 0.09 1.73 7.04 -51.93 -0.37 1.37 16 42 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 43 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 44 H 0.08 1.83 6.41 -51.93 -0.33 1.49 16 LS Contribution 336.98 15.07 5.08 5.08 Total: -1.00 -29.07 336.98 -7.95 -37.02 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -7.28 Total: 6.05 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -0.82 Total: -19.39 kcal Atomic # 7 Polarization: -25.01 SS G_CDS: 0.64 Total: -24.37 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.55 Total: -20.36 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.07 -7.95 -37.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346707731.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.616 kcal (2) G-P(sol) polarization free energy of solvation -29.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds