Wall clock time and date at job start Mon Mar 30 2020 00:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46866 * 2 1 4 4 C 1.52998 * 109.47335 * 65.00188 * 3 2 1 5 5 C 1.52999 * 109.47226 * 186.37310 * 4 3 2 6 6 C 1.53000 * 109.46974 * 185.00330 * 3 2 1 7 7 H 1.09003 * 109.47084 * 186.88808 * 6 3 2 8 8 C 1.53000 * 109.47156 * 306.88811 * 6 3 2 9 9 C 1.50698 * 109.47294 * 66.89115 * 6 3 2 10 10 O 1.20825 * 120.00245 * 357.50345 * 9 6 3 11 11 O 1.34226 * 120.00034 * 177.50996 * 9 6 3 12 12 C 1.45205 * 117.00312 * 185.08035 * 11 9 6 13 13 H 1.09006 * 109.46505 * 336.49523 * 12 11 9 14 14 C 1.50697 * 109.47122 * 216.49927 * 12 11 9 15 15 H 1.08000 * 120.00063 * 359.97438 * 14 12 11 16 16 C 1.37882 * 120.00147 * 179.97438 * 14 12 11 17 17 N 1.31512 * 119.99698 * 0.02562 * 16 14 12 18 18 Si 1.86792 * 120.00052 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47336 * 60.00308 * 18 16 14 20 20 H 1.48503 * 109.46778 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47294 * 299.99934 * 18 16 14 22 22 C 1.52997 * 109.47219 * 96.49617 * 12 11 9 23 23 C 1.52998 * 117.50233 * 8.23125 * 22 12 11 24 24 C 1.52996 * 117.49817 * 299.57143 * 22 12 11 25 25 H 1.08998 * 109.47349 * 60.00376 * 1 2 3 26 26 H 1.09005 * 109.46590 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46819 * 299.99742 * 1 2 3 28 28 H 1.09007 * 109.46879 * 240.00447 * 2 1 3 29 29 H 1.08998 * 109.47557 * 120.00381 * 2 1 3 30 30 H 1.09003 * 109.47139 * 305.00247 * 3 2 1 31 31 H 1.08998 * 109.46676 * 306.37710 * 4 3 2 32 32 H 1.09002 * 109.46923 * 66.37394 * 4 3 2 33 33 H 1.09003 * 109.46842 * 182.97306 * 5 4 3 34 34 H 1.08997 * 109.47446 * 302.97454 * 5 4 3 35 35 H 1.09005 * 109.46790 * 62.97723 * 5 4 3 36 36 H 1.09007 * 109.46970 * 300.00380 * 8 6 3 37 37 H 1.09003 * 109.47127 * 60.00023 * 8 6 3 38 38 H 1.08999 * 109.47241 * 180.02562 * 8 6 3 39 39 H 0.96999 * 120.00258 * 179.97438 * 17 16 14 40 40 H 1.08999 * 115.54607 * 153.90795 * 22 12 11 41 41 H 1.09005 * 117.49819 * 0.02562 * 23 22 12 42 42 H 1.09000 * 117.49891 * 145.01608 * 23 22 12 43 43 H 1.09004 * 117.50254 * 214.98292 * 24 22 12 44 44 H 1.08994 * 117.50409 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6353 2.1266 1.3073 5 6 2.0044 3.6099 1.2423 6 6 3.5648 1.4444 -0.1258 7 1 3.9382 2.4611 -0.0032 8 6 4.1669 0.5460 0.9564 9 6 3.9574 0.9256 -1.4851 10 8 3.1074 0.5466 -2.2557 11 8 5.2513 0.8844 -1.8398 12 6 5.5488 0.4807 -3.2025 13 1 4.7226 -0.1127 -3.5942 14 6 6.8106 -0.3432 -3.2181 15 1 7.3365 -0.5430 -2.2962 16 6 7.2936 -0.8419 -4.4094 17 7 6.6534 -0.5982 -5.5320 18 14 8.8579 -1.8625 -4.4288 19 1 8.6722 -3.0694 -3.5838 20 1 9.1621 -2.2755 -5.8224 21 1 9.9835 -1.0535 -3.8959 22 6 5.7410 1.7244 -4.0725 23 6 5.7872 3.0807 -3.3659 24 6 4.5608 2.6904 -4.1945 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6053 1.9816 -0.8418 31 1 0.5597 2.0257 1.4522 32 1 2.1596 1.6578 2.1401 33 1 1.7644 4.0860 2.1931 34 1 3.0716 3.7105 1.0447 35 1 1.4400 4.0901 0.4429 36 1 3.8829 0.9213 1.9396 37 1 3.7935 -0.4707 0.8338 38 1 5.2532 0.5477 0.8671 39 1 6.9934 -0.9487 -6.3701 40 1 6.3753 1.5916 -4.9489 41 1 5.6812 3.0868 -2.2810 42 1 6.4518 3.8402 -3.7775 43 1 4.4189 3.1935 -5.1510 44 1 3.6474 2.4397 -3.6553 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346707731.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:02 Heat of formation + Delta-G solvation = -106.555889 kcal Electronic energy + Delta-G solvation = -22004.103296 eV Core-core repulsion = 18920.893439 eV Total energy + Delta-G solvation = -3083.209857 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.70028 -39.25852 -37.75089 -36.41336 -34.88212 -33.01973 -32.45758 -29.88106 -27.26528 -26.04461 -24.98245 -23.54971 -23.24015 -22.41428 -20.92321 -19.75946 -18.85763 -18.33000 -17.46946 -17.28375 -16.53168 -15.95937 -15.63762 -15.49214 -14.98844 -14.83199 -14.57703 -14.17358 -13.74700 -13.51783 -13.18328 -13.15241 -13.10072 -12.86977 -12.79091 -12.74574 -12.50756 -12.35541 -12.24806 -12.18821 -12.01817 -11.89544 -11.47372 -11.35535 -11.30159 -11.16988 -11.09600 -10.79763 -10.46887 -10.41519 -8.26554 -6.42852 1.40233 1.42703 1.44447 1.51778 2.07152 2.42924 3.00888 3.13656 3.64690 3.79352 3.89835 4.04298 4.17352 4.23601 4.27327 4.28327 4.35238 4.44217 4.49670 4.63148 4.67522 4.72202 4.79927 4.88081 4.90201 4.97489 4.99882 5.05722 5.11399 5.17111 5.24196 5.24628 5.26169 5.31856 5.35077 5.49027 5.51933 5.55997 5.57958 5.63114 5.95809 6.15902 6.62668 7.05710 7.28773 8.80574 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.023519 B = 0.005298 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.234116 B = 5284.026971 C = 5602.079525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.129 4.129 3 C -0.066 4.066 4 C -0.114 4.114 5 C -0.158 4.158 6 C -0.077 4.077 7 H 0.119 0.881 8 C -0.142 4.142 9 C 0.447 3.553 10 O -0.544 6.544 11 O -0.359 6.359 12 C 0.252 3.748 13 H 0.006 0.994 14 C -0.546 4.546 15 H 0.065 0.935 16 C 0.019 3.981 17 N -0.914 5.914 18 Si 0.976 3.024 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.263 1.263 22 C -0.146 4.146 23 C -0.162 4.162 24 C -0.195 4.195 25 H 0.040 0.960 26 H 0.053 0.947 27 H 0.076 0.924 28 H 0.038 0.962 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.047 0.953 36 H 0.104 0.896 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.269 0.731 40 H 0.103 0.897 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.540 6.577 14.183 17.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 C -0.084 4.084 4 C -0.151 4.151 5 C -0.215 4.215 6 C -0.096 4.096 7 H 0.137 0.863 8 C -0.199 4.199 9 C 0.292 3.708 10 O -0.435 6.435 11 O -0.275 6.275 12 C 0.198 3.802 13 H 0.024 0.976 14 C -0.583 4.583 15 H 0.083 0.917 16 C -0.181 4.181 17 N -0.551 5.551 18 Si 0.799 3.201 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.188 1.188 22 C -0.165 4.165 23 C -0.199 4.199 24 C -0.232 4.232 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.123 0.877 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.121 0.879 41 H 0.111 0.889 42 H 0.122 0.878 43 H 0.115 0.885 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.752 6.411 13.727 17.018 hybrid contribution 0.612 -0.776 -1.105 1.483 sum -7.140 5.635 12.622 15.558 Atomic orbital electron populations 1.21754 0.94745 1.01678 1.01962 1.21723 0.97027 0.96339 1.01586 1.21038 0.90940 0.96979 0.99459 1.21654 1.02355 0.95551 0.95506 1.21878 1.01574 0.95836 1.02232 1.21305 0.98270 1.02311 0.87731 0.86319 1.21857 1.00990 0.98882 0.98176 1.24621 0.80962 0.74422 0.90839 1.90552 1.51865 1.45940 1.55174 1.86467 1.27399 1.78291 1.35340 1.19663 0.95115 0.91244 0.74149 0.97650 1.21252 1.09412 1.33009 0.94675 0.91717 1.25779 1.00933 0.96993 0.94377 1.70100 1.40803 1.45358 0.98879 0.85337 0.78552 0.78717 0.77446 1.19480 1.20313 1.18786 1.22707 1.01170 0.90710 1.01897 1.22883 1.00194 0.98050 0.98789 1.22940 0.92769 1.05571 1.01925 0.94057 0.92776 0.90496 0.94318 0.90665 0.92592 0.90242 0.90008 0.91060 0.92699 0.93384 0.87704 0.92685 0.92237 0.92217 0.87855 0.88913 0.87785 0.88548 0.90891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.68 71.98 0.70 -2.51 16 2 C -0.13 -3.46 4.47 30.60 0.14 -3.33 16 3 C -0.07 -1.65 1.26 -10.79 -0.01 -1.67 16 4 C -0.11 -1.93 5.19 30.59 0.16 -1.78 16 5 C -0.16 -2.53 9.76 71.98 0.70 -1.83 16 6 C -0.08 -2.23 2.51 -11.54 -0.03 -2.26 16 7 H 0.12 3.01 6.28 -2.39 -0.01 2.99 16 8 C -0.14 -3.47 8.40 71.98 0.60 -2.87 16 9 C 0.45 18.67 6.11 71.24 0.44 19.10 16 10 O -0.54 -26.13 12.11 21.97 0.27 -25.86 16 11 O -0.36 -17.14 8.20 -51.38 -0.42 -17.56 16 12 C 0.25 13.91 2.47 29.85 0.07 13.98 16 13 H 0.01 0.37 6.89 -2.38 -0.02 0.35 16 14 C -0.55 -31.43 8.90 25.60 0.23 -31.20 16 15 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 16 C 0.02 1.07 5.19 84.66 0.44 1.51 16 17 N -0.91 -53.34 11.60 21.45 0.25 -53.09 16 18 Si 0.98 43.46 29.54 68.60 2.03 45.49 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 20 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 22 C -0.15 -7.40 5.27 -10.80 -0.06 -7.46 16 23 C -0.16 -6.61 9.88 30.62 0.30 -6.30 16 24 C -0.20 -8.46 10.00 30.62 0.31 -8.16 16 25 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 27 H 0.08 1.31 6.44 -2.39 -0.02 1.29 16 28 H 0.04 1.38 5.97 -2.38 -0.01 1.36 16 29 H 0.07 1.74 6.64 -2.39 -0.02 1.72 16 30 H 0.06 1.65 7.93 -2.39 -0.02 1.63 16 31 H 0.08 1.20 6.29 -2.39 -0.02 1.18 16 32 H 0.08 1.16 6.37 -2.39 -0.02 1.15 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.05 0.91 6.35 -2.39 -0.02 0.90 16 35 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.10 1.75 6.50 -2.38 -0.02 1.74 16 37 H 0.05 1.43 6.44 -2.39 -0.02 1.42 16 38 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 40 H 0.10 5.77 6.47 -2.39 -0.02 5.75 16 41 H 0.09 3.63 7.04 -2.38 -0.02 3.61 16 42 H 0.10 3.68 8.14 -2.39 -0.02 3.67 16 43 H 0.10 3.79 8.14 -2.39 -0.02 3.77 16 44 H 0.07 3.30 6.41 -2.39 -0.02 3.28 16 Total: -1.00 -66.85 336.98 7.08 -59.77 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: 0.97 Total: 26.00 kcal Atomic # 6 Polarization: -38.73 SS G_CDS: 3.99 Total: -34.75 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: 0.25 Total: -53.09 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -0.16 Total: -43.42 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -66.85 7.08 -59.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346707731.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.783 kcal (2) G-P(sol) polarization free energy of solvation -66.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds