Wall clock time and date at job start Mon Mar 30 2020 00:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09003 * 109.46187 * 2 1 4 4 C 1.52993 * 109.47089 * 239.99999 * 2 1 3 5 5 C 1.50696 * 109.47454 * 65.00030 * 4 2 1 6 6 H 1.08002 * 119.99737 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00193 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99993 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00132 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46972 * 59.99922 * 9 7 5 11 11 H 1.48500 * 109.47069 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47020 * 299.99826 * 9 7 5 13 13 C 1.52993 * 109.47000 * 119.99645 * 2 1 3 14 14 N 1.46906 * 109.47378 * 295.00175 * 13 2 1 15 15 C 1.46898 * 110.99888 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.47138 * 180.02562 * 15 14 13 17 17 H 1.08993 * 109.46750 * 305.00146 * 16 15 14 18 18 O 1.42895 * 109.46833 * 64.99958 * 16 15 14 19 19 C 1.52994 * 109.47452 * 184.99841 * 16 15 14 20 20 N 1.46496 * 109.47355 * 174.99751 * 19 16 15 21 21 C 1.35311 * 125.86540 * 124.99997 * 20 19 16 22 22 C 1.35356 * 106.17673 * 180.02562 * 21 20 19 23 23 N 1.33774 * 106.49071 * 359.97438 * 22 21 20 24 24 N 1.28630 * 108.88719 * 359.73775 * 23 22 21 25 25 H 1.09000 * 109.47100 * 299.99682 * 1 2 3 26 26 H 1.08992 * 109.47276 * 60.00586 * 1 2 3 27 27 H 1.09007 * 109.46734 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46976 * 184.99985 * 4 2 1 29 29 H 1.09005 * 109.47398 * 304.99596 * 4 2 1 30 30 H 0.97003 * 119.99702 * 180.02562 * 8 7 5 31 31 H 1.09004 * 109.46862 * 175.00278 * 13 2 1 32 32 H 1.09000 * 109.47250 * 55.00302 * 13 2 1 33 33 H 1.00904 * 110.99860 * 56.05050 * 14 13 2 34 34 H 1.08997 * 109.47334 * 299.99788 * 15 14 13 35 35 H 1.08995 * 109.47296 * 60.00089 * 15 14 13 36 36 H 0.96701 * 114.00463 * 60.00293 * 18 16 15 37 37 H 1.08997 * 109.47133 * 295.00502 * 19 16 15 38 38 H 1.09003 * 109.46947 * 54.99680 * 19 16 15 39 39 H 1.08001 * 126.91825 * 0.02672 * 21 20 19 40 40 H 1.07999 * 126.75611 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0570 -2.4765 6 1 1.0801 0.9741 -2.3757 7 6 1.9924 -0.4023 -3.7282 8 7 2.6756 -1.5193 -3.8511 9 14 1.4977 0.5620 -5.2497 10 1 2.0898 1.9225 -5.1877 11 1 1.9928 -0.1380 -6.4622 12 1 0.0176 0.6685 -5.3087 13 6 2.0400 -0.7211 1.2492 14 7 1.6514 0.0376 2.4457 15 6 2.1258 -0.6263 3.6672 16 6 1.7023 0.1911 4.8893 17 1 2.0611 1.2148 4.7836 18 8 0.2769 0.1939 4.9897 19 6 2.3013 -0.4316 6.1519 20 7 1.9960 0.4165 7.3067 21 6 1.3774 0.0172 8.4420 22 6 1.2998 1.1120 9.2342 23 7 1.8678 2.1140 8.5539 24 7 2.2752 1.6680 7.4183 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 3.1264 -0.7994 -1.2055 29 1 1.6055 -1.7198 -1.2951 30 1 2.9229 -1.8423 -4.7317 31 1 3.1264 -0.7993 1.2056 32 1 1.6055 -1.7197 1.2952 33 1 0.6528 0.1794 2.4753 34 1 1.6921 -1.6244 3.7301 35 1 3.2127 -0.7035 3.6401 36 1 -0.1124 -0.6860 5.0862 37 1 1.8745 -1.4227 6.3058 38 1 3.3821 -0.5152 6.0381 39 1 1.0179 -0.9753 8.6703 40 1 0.8649 1.1659 10.2213 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352865184.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:11 Heat of formation + Delta-G solvation = 33.609710 kcal Electronic energy + Delta-G solvation = -19852.430697 eV Core-core repulsion = 16704.051283 eV Total energy + Delta-G solvation = -3148.379413 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.46708 -38.74650 -36.60911 -34.64236 -33.83751 -32.04388 -31.27975 -30.21446 -27.18964 -26.48042 -24.72653 -23.09323 -22.58204 -21.96025 -21.55751 -19.04603 -18.17750 -16.99980 -16.67629 -16.56354 -16.07355 -15.20595 -15.09522 -14.74670 -14.66178 -14.32045 -13.94180 -13.27668 -13.21337 -12.76680 -12.35484 -12.14689 -11.94989 -11.80390 -11.54531 -11.38979 -11.13068 -10.94127 -10.87968 -10.76432 -10.38389 -10.28636 -10.10525 -9.75514 -9.63282 -9.17928 -8.99916 -8.34440 -8.28937 -5.99239 -4.00406 1.35076 1.99522 2.36915 3.34135 3.38318 3.41197 3.72493 3.79175 4.15986 4.25188 4.46148 4.59552 4.64170 4.69696 4.76688 4.95603 4.96534 5.34164 5.36639 5.38290 5.63616 5.69676 5.77741 5.90616 6.01824 6.18144 6.25545 6.41529 6.51218 6.86579 7.07892 7.12825 7.16558 7.25315 7.54838 7.66890 7.82383 8.00574 8.28395 8.44510 9.05613 9.63156 11.12246 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.055862 B = 0.002619 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.118098 B =10687.179346 C =10799.325493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 H 0.066 0.934 4 C 0.028 3.972 5 C -0.514 4.514 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.065 3.935 14 N -0.685 5.685 15 C 0.031 3.969 16 C 0.096 3.904 17 H 0.127 0.873 18 O -0.549 6.549 19 C 0.081 3.919 20 N -0.281 5.281 21 C -0.052 4.052 22 C -0.054 4.054 23 N -0.274 5.274 24 N -0.077 5.077 25 H 0.032 0.968 26 H 0.063 0.937 27 H 0.040 0.960 28 H 0.015 0.985 29 H 0.014 0.986 30 H 0.260 0.740 31 H 0.068 0.932 32 H 0.024 0.976 33 H 0.347 0.653 34 H 0.032 0.968 35 H 0.084 0.916 36 H 0.370 0.630 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.188 0.812 40 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.766 -3.212 23.895 24.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.104 4.104 3 H 0.085 0.915 4 C -0.009 4.009 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.064 4.064 14 N -0.318 5.318 15 C -0.100 4.100 16 C 0.036 3.964 17 H 0.145 0.855 18 O -0.353 6.353 19 C -0.041 4.041 20 N -0.074 5.074 21 C -0.203 4.203 22 C -0.211 4.211 23 N -0.140 5.140 24 N -0.057 5.057 25 H 0.051 0.949 26 H 0.082 0.918 27 H 0.059 0.941 28 H 0.033 0.967 29 H 0.032 0.968 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.042 0.958 33 H 0.167 0.833 34 H 0.051 0.949 35 H 0.103 0.897 36 H 0.217 0.783 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.205 0.795 40 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -1.424 -1.044 22.963 23.030 hybrid contribution -1.332 -2.170 -0.323 2.566 sum -2.756 -3.213 22.640 23.032 Atomic orbital electron populations 1.21747 0.96611 1.00382 1.00450 1.21229 0.94942 1.00187 0.94000 0.91521 1.19104 0.96112 0.95326 0.90358 1.21197 1.34731 1.08300 0.90969 0.92583 1.25019 0.95309 0.95094 0.99119 1.69953 1.39043 1.21236 1.23507 0.86680 0.78876 0.80172 0.82411 1.20227 1.21377 1.20293 1.22170 1.00382 0.94356 0.89446 1.60469 1.20652 1.49976 1.00670 1.22512 1.01821 0.94870 0.90754 1.22410 0.81092 1.02843 0.90082 0.85525 1.86753 1.18964 1.33753 1.95840 1.22943 1.04233 0.93046 0.83871 1.47323 1.37665 1.08721 1.13738 1.23652 1.05389 1.02887 0.88354 1.23613 1.05632 0.89339 1.02558 1.75139 1.12869 1.26321 0.99626 1.78327 1.19699 0.92445 1.15264 0.94859 0.91777 0.94093 0.96667 0.96794 0.93037 0.91389 0.95809 0.83333 0.94946 0.89730 0.78271 0.87277 0.86968 0.79498 0.79489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 8.78 37.16 0.33 -2.15 16 2 C -0.08 -1.70 2.54 -90.62 -0.23 -1.93 16 3 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 4 C 0.03 0.72 4.45 -27.89 -0.12 0.59 16 5 C -0.51 -14.31 8.41 -34.44 -0.29 -14.59 16 6 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 9 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 13 C 0.06 1.05 5.14 -3.82 -0.02 1.03 16 14 N -0.68 -9.28 6.50 -113.78 -0.74 -10.02 16 15 C 0.03 0.29 5.36 -3.82 -0.02 0.27 16 16 C 0.10 0.83 3.29 -26.73 -0.09 0.74 16 17 H 0.13 1.47 8.00 -51.93 -0.42 1.05 16 18 O -0.55 -5.18 12.80 -35.23 -0.45 -5.63 16 19 C 0.08 0.48 6.09 -4.05 -0.02 0.45 16 20 N -0.28 -2.54 3.38 -61.27 -0.21 -2.74 16 21 C -0.05 -0.37 11.57 -17.05 -0.20 -0.56 16 22 C -0.05 -0.48 12.06 -17.73 -0.21 -0.70 16 23 N -0.27 -3.58 12.41 30.24 0.38 -3.20 16 24 N -0.08 -1.00 12.83 60.35 0.77 -0.22 16 25 H 0.03 0.52 6.68 -51.93 -0.35 0.18 16 26 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.35 4.71 6.54 -39.29 -0.26 4.46 16 34 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.37 1.97 9.05 45.56 0.41 2.38 16 37 H 0.11 0.27 8.07 -51.93 -0.42 -0.15 16 38 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.19 0.51 8.06 -52.49 -0.42 0.09 16 40 H 0.19 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 335.26 15.07 5.05 5.05 Total: -1.00 -34.69 335.26 -6.00 -40.69 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -5.54 Total: 0.86 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: -0.98 Total: -15.36 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: 0.94 Total: -42.27 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: -0.45 Total: -5.63 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.69 -6.00 -40.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352865184.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.302 kcal (2) G-P(sol) polarization free energy of solvation -34.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds