Wall clock time and date at job start Mon Mar 30 2020 00:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09003 * 109.46187 * 2 1 4 4 C 1.52993 * 109.47089 * 239.99999 * 2 1 3 5 5 C 1.50696 * 109.47454 * 65.00030 * 4 2 1 6 6 H 1.08002 * 119.99737 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00193 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99993 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00132 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46972 * 59.99922 * 9 7 5 11 11 H 1.48500 * 109.47069 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47020 * 299.99826 * 9 7 5 13 13 C 1.52993 * 109.47000 * 119.99645 * 2 1 3 14 14 N 1.46906 * 109.47378 * 295.00175 * 13 2 1 15 15 C 1.46898 * 110.99888 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.47138 * 180.02562 * 15 14 13 17 17 H 1.08993 * 109.46750 * 305.00146 * 16 15 14 18 18 O 1.42895 * 109.46833 * 64.99958 * 16 15 14 19 19 C 1.52994 * 109.47452 * 184.99841 * 16 15 14 20 20 N 1.46496 * 109.47355 * 174.99751 * 19 16 15 21 21 C 1.35311 * 125.86540 * 124.99997 * 20 19 16 22 22 C 1.35356 * 106.17673 * 180.02562 * 21 20 19 23 23 N 1.33774 * 106.49071 * 359.97438 * 22 21 20 24 24 N 1.28630 * 108.88719 * 359.73775 * 23 22 21 25 25 H 1.09000 * 109.47100 * 299.99682 * 1 2 3 26 26 H 1.08992 * 109.47276 * 60.00586 * 1 2 3 27 27 H 1.09007 * 109.46734 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46976 * 184.99985 * 4 2 1 29 29 H 1.09005 * 109.47398 * 304.99596 * 4 2 1 30 30 H 0.97003 * 119.99702 * 180.02562 * 8 7 5 31 31 H 1.09004 * 109.46862 * 175.00278 * 13 2 1 32 32 H 1.09000 * 109.47250 * 55.00302 * 13 2 1 33 33 H 1.00904 * 110.99860 * 56.05050 * 14 13 2 34 34 H 1.08997 * 109.47334 * 299.99788 * 15 14 13 35 35 H 1.08995 * 109.47296 * 60.00089 * 15 14 13 36 36 H 0.96701 * 114.00463 * 60.00293 * 18 16 15 37 37 H 1.08997 * 109.47133 * 295.00502 * 19 16 15 38 38 H 1.09003 * 109.46947 * 54.99680 * 19 16 15 39 39 H 1.08001 * 126.91825 * 0.02672 * 21 20 19 40 40 H 1.07999 * 126.75611 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0570 -2.4765 6 1 1.0801 0.9741 -2.3757 7 6 1.9924 -0.4023 -3.7282 8 7 2.6756 -1.5193 -3.8511 9 14 1.4977 0.5620 -5.2497 10 1 2.0898 1.9225 -5.1877 11 1 1.9928 -0.1380 -6.4622 12 1 0.0176 0.6685 -5.3087 13 6 2.0400 -0.7211 1.2492 14 7 1.6514 0.0376 2.4457 15 6 2.1258 -0.6263 3.6672 16 6 1.7023 0.1911 4.8893 17 1 2.0611 1.2148 4.7836 18 8 0.2769 0.1939 4.9897 19 6 2.3013 -0.4316 6.1519 20 7 1.9960 0.4165 7.3067 21 6 1.3774 0.0172 8.4420 22 6 1.2998 1.1120 9.2342 23 7 1.8678 2.1140 8.5539 24 7 2.2752 1.6680 7.4183 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 3.1264 -0.7994 -1.2055 29 1 1.6055 -1.7198 -1.2951 30 1 2.9229 -1.8423 -4.7317 31 1 3.1264 -0.7993 1.2056 32 1 1.6055 -1.7197 1.2952 33 1 0.6528 0.1794 2.4753 34 1 1.6921 -1.6244 3.7301 35 1 3.2127 -0.7035 3.6401 36 1 -0.1124 -0.6860 5.0862 37 1 1.8745 -1.4227 6.3058 38 1 3.3821 -0.5152 6.0381 39 1 1.0179 -0.9753 8.6703 40 1 0.8649 1.1659 10.2213 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352865184.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:10 Heat of formation + Delta-G solvation = 5.406892 kcal Electronic energy + Delta-G solvation = -19853.653663 eV Core-core repulsion = 16704.051283 eV Total energy + Delta-G solvation = -3149.602379 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.12380 -39.52183 -37.94294 -35.43967 -35.24842 -33.80304 -31.91850 -31.09290 -28.92023 -27.65041 -26.09830 -24.19953 -23.62303 -22.90517 -22.22306 -20.65796 -18.82552 -18.54357 -17.61529 -17.32591 -17.10433 -16.60073 -16.04226 -15.80284 -15.49943 -15.45849 -15.02948 -14.57389 -14.35733 -14.00220 -13.67239 -13.40805 -13.24929 -12.95992 -12.76701 -12.63771 -12.55518 -12.26101 -12.21328 -11.95864 -11.79693 -11.62605 -11.49545 -11.09075 -11.03164 -10.70036 -10.52983 -10.27311 -9.33547 -8.17937 -6.26583 0.73714 1.39876 1.42283 1.48703 1.49972 1.68874 2.41695 3.01007 3.15485 3.28743 3.63233 3.75581 3.82803 3.96086 4.15012 4.23519 4.25285 4.35019 4.38244 4.38533 4.46316 4.69592 4.74164 4.79790 4.86788 5.02646 5.06344 5.23459 5.32583 5.37970 5.48037 5.55230 5.71088 5.79822 5.89415 6.08286 6.31840 6.48611 6.74862 6.89006 7.41490 7.58889 8.93719 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.055862 B = 0.002619 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.118098 B =10687.179346 C =10799.325493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.078 4.078 3 H 0.051 0.949 4 C 0.034 3.966 5 C -0.531 4.531 6 H 0.058 0.942 7 C -0.001 4.001 8 N -0.934 5.934 9 Si 0.959 3.041 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.267 1.267 13 C 0.080 3.920 14 N -0.696 5.696 15 C 0.033 3.967 16 C 0.108 3.892 17 H 0.089 0.911 18 O -0.570 6.570 19 C 0.081 3.919 20 N -0.280 5.280 21 C -0.032 4.032 22 C -0.072 4.072 23 N -0.321 5.321 24 N -0.130 5.130 25 H 0.062 0.938 26 H 0.042 0.958 27 H 0.044 0.956 28 H -0.012 1.012 29 H -0.007 1.007 30 H 0.262 0.738 31 H 0.060 0.940 32 H 0.031 0.969 33 H 0.347 0.653 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.390 0.610 37 H 0.156 0.844 38 H 0.123 0.877 39 H 0.238 0.762 40 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.913 -4.441 25.204 25.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.097 4.097 3 H 0.069 0.931 4 C -0.004 4.004 5 C -0.569 4.569 6 H 0.076 0.924 7 C -0.199 4.199 8 N -0.575 5.575 9 Si 0.784 3.216 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.192 1.192 13 C -0.049 4.049 14 N -0.329 5.329 15 C -0.097 4.097 16 C 0.047 3.953 17 H 0.107 0.893 18 O -0.377 6.377 19 C -0.040 4.040 20 N -0.073 5.073 21 C -0.183 4.183 22 C -0.230 4.230 23 N -0.186 5.186 24 N -0.110 5.110 25 H 0.081 0.919 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.006 0.994 29 H 0.011 0.989 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.049 0.951 33 H 0.167 0.833 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.239 0.761 37 H 0.174 0.826 38 H 0.141 0.859 39 H 0.254 0.746 40 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -2.568 -2.261 24.276 24.516 hybrid contribution -1.002 -1.853 -0.662 2.208 sum -3.570 -4.114 23.614 24.235 Atomic orbital electron populations 1.21640 0.95105 1.00743 1.00840 1.21032 0.96142 0.98898 0.93645 0.93069 1.18994 0.94283 0.94622 0.92494 1.21615 1.34509 1.08546 0.92222 0.92394 1.25918 0.95292 0.96103 1.02540 1.70080 1.40204 1.22836 1.24333 0.85597 0.78940 0.78766 0.78334 1.19508 1.20909 1.19227 1.21826 0.99746 0.94284 0.89081 1.60351 1.20788 1.50521 1.01264 1.22579 1.02243 0.95881 0.88976 1.22075 0.81029 1.00934 0.91222 0.89306 1.86717 1.19331 1.35720 1.95944 1.23157 1.05183 0.94006 0.81644 1.47579 1.36929 1.07999 1.14831 1.24426 1.02903 1.04237 0.86744 1.24260 1.05626 0.89237 1.03894 1.75059 1.14419 1.28562 1.00521 1.78267 1.22169 0.94618 1.15918 0.91890 0.93902 0.93692 0.99380 0.98870 0.92915 0.92137 0.95128 0.83271 0.92171 0.89215 0.76065 0.82620 0.85860 0.74606 0.76890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 8.78 71.99 0.63 -3.91 16 2 C -0.08 -3.15 2.54 -10.80 -0.03 -3.18 16 3 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 4 C 0.03 1.75 4.45 29.84 0.13 1.88 16 5 C -0.53 -30.07 8.41 25.60 0.22 -29.85 16 6 H 0.06 3.18 7.06 -2.91 -0.02 3.16 16 7 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 8 N -0.93 -56.74 13.29 21.45 0.28 -56.46 16 9 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 13 C 0.08 2.53 5.14 86.30 0.44 2.97 16 14 N -0.70 -17.83 6.50 -513.88 -3.34 -21.17 16 15 C 0.03 0.54 5.36 86.31 0.46 1.00 16 16 C 0.11 1.66 3.29 30.59 0.10 1.76 16 17 H 0.09 2.08 8.00 -2.39 -0.02 2.06 16 18 O -0.57 -9.42 12.80 -148.98 -1.91 -11.33 16 19 C 0.08 0.69 6.09 86.38 0.53 1.22 16 20 N -0.28 -4.46 3.38 -347.75 -1.18 -5.64 16 21 C -0.03 -0.34 11.57 83.49 0.97 0.62 16 22 C -0.07 -1.17 12.06 83.73 1.01 -0.16 16 23 N -0.32 -8.45 12.41 -58.25 -0.72 -9.17 16 24 N -0.13 -3.38 12.83 37.02 0.48 -2.91 16 25 H 0.06 1.88 6.68 -2.39 -0.02 1.87 16 26 H 0.04 1.70 6.95 -2.39 -0.02 1.69 16 27 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 28 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 29 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 30 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 31 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 32 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.35 8.77 6.54 -89.69 -0.59 8.18 16 34 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.39 2.72 9.05 -74.06 -0.67 2.05 16 37 H 0.16 -0.11 8.07 -2.39 -0.02 -0.13 16 38 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.24 -0.08 8.06 -2.91 -0.02 -0.11 16 40 H 0.21 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -79.33 335.26 0.34 -78.98 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -0.22 Total: 8.30 kcal Atomic # 6 Polarization: -32.17 SS G_CDS: 4.92 Total: -27.25 kcal Atomic # 7 Polarization: -90.88 SS G_CDS: -4.48 Total: -95.36 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: -1.91 Total: -11.33 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -79.33 0.34 -78.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352865184.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.391 kcal (2) G-P(sol) polarization free energy of solvation -79.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds