Wall clock time and date at job start Mon Mar 30 2020 00:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47462 * 2 1 4 4 C 1.53005 * 109.47007 * 239.99996 * 2 1 3 5 5 C 1.50699 * 109.47129 * 65.00265 * 4 2 1 6 6 H 1.08000 * 119.99740 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00123 * 179.97438 * 5 4 2 8 8 N 1.31521 * 120.00341 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99812 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.46890 * 90.00277 * 9 7 5 11 11 H 1.48504 * 109.47239 * 209.99751 * 9 7 5 12 12 H 1.48495 * 109.47485 * 329.99920 * 9 7 5 13 13 C 1.53002 * 109.47035 * 120.00124 * 2 1 3 14 14 N 1.46900 * 109.46922 * 294.99786 * 13 2 1 15 15 C 1.46898 * 110.99589 * 179.97438 * 14 13 2 16 16 C 1.53001 * 109.46893 * 180.02562 * 15 14 13 17 17 H 1.08999 * 109.47164 * 60.00204 * 16 15 14 18 18 O 1.42903 * 109.47171 * 299.99938 * 16 15 14 19 19 C 1.53003 * 109.47376 * 180.02562 * 16 15 14 20 20 N 1.46494 * 109.47283 * 185.00021 * 19 16 15 21 21 C 1.35314 * 125.86878 * 125.00082 * 20 19 16 22 22 C 1.35357 * 106.17609 * 180.02562 * 21 20 19 23 23 N 1.33778 * 106.49470 * 359.97438 * 22 21 20 24 24 N 1.28633 * 108.88439 * 359.74011 * 23 22 21 25 25 H 1.09005 * 109.46966 * 59.99720 * 1 2 3 26 26 H 1.09000 * 109.47472 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47458 * 300.00482 * 1 2 3 28 28 H 1.09004 * 109.46757 * 184.99819 * 4 2 1 29 29 H 1.08998 * 109.47508 * 304.99803 * 4 2 1 30 30 H 0.97001 * 119.99615 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.47300 * 174.99743 * 13 2 1 32 32 H 1.09003 * 109.47038 * 54.99847 * 13 2 1 33 33 H 1.00904 * 110.99777 * 56.04878 * 14 13 2 34 34 H 1.08999 * 109.47049 * 60.00398 * 15 14 13 35 35 H 1.08997 * 109.47646 * 300.00448 * 15 14 13 36 36 H 0.96700 * 114.00311 * 300.00378 * 18 16 15 37 37 H 1.09005 * 109.46682 * 304.99749 * 19 16 15 38 38 H 1.08999 * 109.47221 * 64.99915 * 19 16 15 39 39 H 1.07992 * 126.91105 * 0.02562 * 21 20 19 40 40 H 1.07996 * 126.74875 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0807 0.9746 -2.3756 7 6 1.9932 -0.4016 -3.7283 8 7 1.6449 0.2773 -4.7994 9 14 2.9647 -1.9876 -3.9027 10 1 2.0263 -3.1326 -4.0195 11 1 3.8133 -1.9170 -5.1193 12 1 3.8268 -2.1740 -2.7081 13 6 2.0399 -0.7213 1.2492 14 7 1.6513 0.0374 2.4456 15 6 2.1247 -0.6272 3.6671 16 6 1.7013 0.1902 4.8892 17 1 0.6144 0.2678 4.9157 18 8 2.2704 1.4985 4.8077 19 6 2.1948 -0.5016 6.1615 20 7 1.6888 0.2150 7.3348 21 6 0.9743 -0.3274 8.3479 22 6 0.7168 0.6831 9.2109 23 7 1.2794 1.7796 8.6906 24 7 1.8522 1.4676 7.5819 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 3.1263 -0.7994 -1.2056 29 1 1.6054 -1.7198 -1.2952 30 1 1.8922 -0.0457 -5.6800 31 1 3.1263 -0.7996 1.2056 32 1 1.6053 -1.7198 1.2951 33 1 0.6528 0.1793 2.4753 34 1 3.2116 -0.7051 3.6405 35 1 1.6904 -1.6249 3.7296 36 1 3.2370 1.5060 4.7803 37 1 1.8330 -1.5297 6.1797 38 1 3.2847 -0.4996 6.1768 39 1 0.6707 -1.3589 8.4478 40 1 0.1656 0.6170 10.1372 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352865193.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:13 Heat of formation + Delta-G solvation = 40.808003 kcal Electronic energy + Delta-G solvation = -19903.690084 eV Core-core repulsion = 16755.622812 eV Total energy + Delta-G solvation = -3148.067272 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.46972 -38.61465 -36.70698 -34.55924 -33.88030 -32.06619 -31.25694 -30.26047 -27.70242 -26.60730 -24.70946 -23.01078 -22.48085 -21.88535 -21.56745 -19.08953 -18.13787 -17.19736 -16.91243 -16.29114 -16.00648 -15.24956 -15.10350 -14.84417 -14.73379 -14.18203 -13.95416 -13.53147 -13.00191 -12.78380 -12.67378 -12.17660 -11.99647 -11.89662 -11.67286 -11.51355 -11.12970 -11.06244 -10.79569 -10.71746 -10.48239 -10.11346 -9.85697 -9.75920 -9.64302 -9.45877 -9.08510 -8.53624 -8.34013 -6.03370 -4.00570 1.33857 1.97992 2.36539 3.28684 3.36594 3.39303 3.64986 3.95388 4.14956 4.31280 4.41276 4.44640 4.61963 4.71065 4.73840 4.87880 4.94399 5.25898 5.29763 5.37822 5.50503 5.56631 5.64674 5.87570 5.89492 6.05965 6.24995 6.30833 6.39741 6.69704 6.91708 7.01749 7.10618 7.28057 7.36716 7.47154 7.52242 7.80612 8.30028 8.55836 9.02513 9.59148 11.10066 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.052854 B = 0.002750 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.635012 B =10178.396937 C =10359.963507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.076 4.076 3 H 0.073 0.927 4 C -0.008 4.008 5 C -0.513 4.513 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.904 5.904 9 Si 0.879 3.121 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.267 1.267 13 C 0.063 3.937 14 N -0.677 5.677 15 C 0.029 3.971 16 C 0.102 3.898 17 H 0.101 0.899 18 O -0.525 6.525 19 C 0.079 3.921 20 N -0.288 5.288 21 C -0.061 4.061 22 C -0.054 4.054 23 N -0.279 5.279 24 N -0.055 5.055 25 H 0.069 0.931 26 H 0.039 0.961 27 H 0.034 0.966 28 H 0.015 0.985 29 H 0.009 0.991 30 H 0.262 0.738 31 H 0.067 0.933 32 H 0.023 0.977 33 H 0.342 0.658 34 H 0.079 0.921 35 H 0.037 0.963 36 H 0.375 0.625 37 H 0.114 0.886 38 H 0.105 0.895 39 H 0.188 0.812 40 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.182 -7.065 25.779 26.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.095 4.095 3 H 0.092 0.908 4 C -0.046 4.046 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.544 5.544 9 Si 0.707 3.293 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.066 4.066 14 N -0.309 5.309 15 C -0.102 4.102 16 C 0.041 3.959 17 H 0.119 0.881 18 O -0.328 6.328 19 C -0.043 4.043 20 N -0.082 5.082 21 C -0.211 4.211 22 C -0.211 4.211 23 N -0.146 5.146 24 N -0.036 5.036 25 H 0.088 0.912 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.033 0.967 29 H 0.027 0.973 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.041 0.959 33 H 0.161 0.839 34 H 0.097 0.903 35 H 0.055 0.945 36 H 0.223 0.777 37 H 0.132 0.868 38 H 0.123 0.877 39 H 0.205 0.795 40 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 0.723 -5.144 25.040 25.573 hybrid contribution -0.041 -3.185 0.107 3.187 sum 0.682 -8.329 25.147 26.499 Atomic orbital electron populations 1.21756 0.96214 1.00425 1.00972 1.21032 0.95243 1.00331 0.92846 0.90843 1.19601 0.95900 0.95638 0.93444 1.21128 1.35349 1.09595 0.89066 0.90784 1.25040 0.95673 0.96956 0.95972 1.69918 1.47139 1.39286 0.98007 0.86797 0.80627 0.84290 0.77633 1.20476 1.21453 1.19131 1.22197 1.00324 0.94328 0.89742 1.60408 1.20101 1.49898 1.00517 1.22562 1.01553 0.95257 0.90846 1.22117 0.99371 0.84580 0.89837 0.88084 1.86756 1.25216 1.24771 1.96091 1.22981 1.01689 0.96402 0.83233 1.47427 1.35633 1.07992 1.17117 1.23707 1.03662 1.02362 0.91368 1.23632 1.05566 0.89157 1.02741 1.75193 1.10906 1.25404 1.03049 1.78518 1.18828 0.94657 1.11565 0.91229 0.94142 0.94688 0.96705 0.97309 0.92808 0.91439 0.95866 0.83861 0.90292 0.94507 0.77748 0.86796 0.87685 0.79488 0.79526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.77 37.16 0.33 -2.11 16 2 C -0.08 -1.44 2.55 -90.62 -0.23 -1.67 16 3 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 4 C -0.01 -0.19 3.52 -27.88 -0.10 -0.28 16 5 C -0.51 -14.37 8.96 -34.44 -0.31 -14.68 16 6 H 0.07 2.23 7.30 -52.49 -0.38 1.85 16 7 C 0.06 1.86 5.47 -17.82 -0.10 1.77 16 8 N -0.90 -27.84 13.96 55.43 0.77 -27.06 16 9 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 13 C 0.06 0.94 5.14 -3.82 -0.02 0.92 16 14 N -0.68 -8.52 6.37 -113.78 -0.72 -9.24 16 15 C 0.03 0.24 5.35 -3.82 -0.02 0.22 16 16 C 0.10 0.82 3.37 -26.73 -0.09 0.73 16 17 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 18 O -0.52 -5.72 12.24 -35.23 -0.43 -6.15 16 19 C 0.08 0.43 6.14 -4.04 -0.02 0.41 16 20 N -0.29 -2.50 3.44 -61.26 -0.21 -2.71 16 21 C -0.06 -0.42 11.57 -17.04 -0.20 -0.61 16 22 C -0.05 -0.47 12.06 -17.73 -0.21 -0.69 16 23 N -0.28 -3.59 12.41 30.24 0.38 -3.22 16 24 N -0.06 -0.70 12.10 60.35 0.73 0.03 16 25 H 0.07 1.42 6.95 -51.93 -0.36 1.06 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.03 0.53 6.68 -51.93 -0.35 0.18 16 28 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 29 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.34 4.29 6.98 -39.29 -0.27 4.01 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.38 3.02 9.05 45.56 0.41 3.44 16 37 H 0.11 0.27 8.07 -51.93 -0.42 -0.15 16 38 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.19 0.49 8.06 -52.49 -0.42 0.07 16 40 H 0.19 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 330.97 15.07 4.99 4.99 Total: -1.00 -35.21 330.97 -5.68 -40.89 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -5.53 Total: 1.60 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: -0.97 Total: -16.00 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: 0.94 Total: -42.20 kcal Atomic # 8 Polarization: -5.72 SS G_CDS: -0.43 Total: -6.15 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.21 -5.68 -40.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352865193.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.695 kcal (2) G-P(sol) polarization free energy of solvation -35.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds