Wall clock time and date at job start Mon Mar 30 2020 00:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47462 * 2 1 4 4 C 1.53005 * 109.47007 * 239.99996 * 2 1 3 5 5 C 1.50699 * 109.47129 * 65.00265 * 4 2 1 6 6 H 1.08000 * 119.99740 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00123 * 179.97438 * 5 4 2 8 8 N 1.31521 * 120.00341 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99812 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.46890 * 90.00277 * 9 7 5 11 11 H 1.48504 * 109.47239 * 209.99751 * 9 7 5 12 12 H 1.48495 * 109.47485 * 329.99920 * 9 7 5 13 13 C 1.53002 * 109.47035 * 120.00124 * 2 1 3 14 14 N 1.46900 * 109.46922 * 294.99786 * 13 2 1 15 15 C 1.46898 * 110.99589 * 179.97438 * 14 13 2 16 16 C 1.53001 * 109.46893 * 180.02562 * 15 14 13 17 17 H 1.08999 * 109.47164 * 60.00204 * 16 15 14 18 18 O 1.42903 * 109.47171 * 299.99938 * 16 15 14 19 19 C 1.53003 * 109.47376 * 180.02562 * 16 15 14 20 20 N 1.46494 * 109.47283 * 185.00021 * 19 16 15 21 21 C 1.35314 * 125.86878 * 125.00082 * 20 19 16 22 22 C 1.35357 * 106.17609 * 180.02562 * 21 20 19 23 23 N 1.33778 * 106.49470 * 359.97438 * 22 21 20 24 24 N 1.28633 * 108.88439 * 359.74011 * 23 22 21 25 25 H 1.09005 * 109.46966 * 59.99720 * 1 2 3 26 26 H 1.09000 * 109.47472 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47458 * 300.00482 * 1 2 3 28 28 H 1.09004 * 109.46757 * 184.99819 * 4 2 1 29 29 H 1.08998 * 109.47508 * 304.99803 * 4 2 1 30 30 H 0.97001 * 119.99615 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.47300 * 174.99743 * 13 2 1 32 32 H 1.09003 * 109.47038 * 54.99847 * 13 2 1 33 33 H 1.00904 * 110.99777 * 56.04878 * 14 13 2 34 34 H 1.08999 * 109.47049 * 60.00398 * 15 14 13 35 35 H 1.08997 * 109.47646 * 300.00448 * 15 14 13 36 36 H 0.96700 * 114.00311 * 300.00378 * 18 16 15 37 37 H 1.09005 * 109.46682 * 304.99749 * 19 16 15 38 38 H 1.08999 * 109.47221 * 64.99915 * 19 16 15 39 39 H 1.07992 * 126.91105 * 0.02562 * 21 20 19 40 40 H 1.07996 * 126.74875 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0807 0.9746 -2.3756 7 6 1.9932 -0.4016 -3.7283 8 7 1.6449 0.2773 -4.7994 9 14 2.9647 -1.9876 -3.9027 10 1 2.0263 -3.1326 -4.0195 11 1 3.8133 -1.9170 -5.1193 12 1 3.8268 -2.1740 -2.7081 13 6 2.0399 -0.7213 1.2492 14 7 1.6513 0.0374 2.4456 15 6 2.1247 -0.6272 3.6671 16 6 1.7013 0.1902 4.8892 17 1 0.6144 0.2678 4.9157 18 8 2.2704 1.4985 4.8077 19 6 2.1948 -0.5016 6.1615 20 7 1.6888 0.2150 7.3348 21 6 0.9743 -0.3274 8.3479 22 6 0.7168 0.6831 9.2109 23 7 1.2794 1.7796 8.6906 24 7 1.8522 1.4676 7.5819 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 3.1263 -0.7994 -1.2056 29 1 1.6054 -1.7198 -1.2952 30 1 1.8922 -0.0457 -5.6800 31 1 3.1263 -0.7996 1.2056 32 1 1.6053 -1.7198 1.2951 33 1 0.6528 0.1793 2.4753 34 1 3.2116 -0.7051 3.6405 35 1 1.6904 -1.6249 3.7296 36 1 3.2370 1.5060 4.7803 37 1 1.8330 -1.5297 6.1797 38 1 3.2847 -0.4996 6.1768 39 1 0.6707 -1.3589 8.4478 40 1 0.1656 0.6170 10.1372 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352865193.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:13 Heat of formation + Delta-G solvation = 11.446553 kcal Electronic energy + Delta-G solvation = -19904.963292 eV Core-core repulsion = 16755.622812 eV Total energy + Delta-G solvation = -3149.340480 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.09760 -39.37424 -37.94196 -35.40223 -35.15241 -33.89715 -31.86448 -31.12124 -29.39619 -27.63543 -25.94486 -23.86319 -23.52485 -22.90108 -22.24094 -20.64049 -18.96773 -18.73386 -17.80066 -17.19089 -16.65195 -16.43009 -16.03795 -15.77923 -15.58139 -15.45105 -15.06052 -14.82729 -14.35336 -13.96103 -13.68871 -13.49191 -13.38682 -12.93231 -12.79913 -12.55803 -12.47594 -12.17061 -12.08076 -11.77711 -11.72115 -11.47932 -11.45027 -11.22040 -11.06935 -10.73651 -10.64261 -10.25394 -9.25637 -8.25561 -6.28481 0.75738 1.35984 1.38766 1.50340 1.51226 1.70208 2.38298 3.00143 3.09572 3.49704 3.62380 3.74217 3.86236 4.00024 4.14273 4.21422 4.25275 4.34883 4.39275 4.40043 4.42645 4.67747 4.77998 4.80935 4.86038 4.99517 5.01655 5.04846 5.29156 5.32564 5.37520 5.55757 5.69390 5.73816 5.74069 6.13529 6.35371 6.46304 6.79769 6.90561 7.35074 7.63135 8.91448 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.052854 B = 0.002750 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.635012 B =10178.396937 C =10359.963507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.073 4.073 3 H 0.047 0.953 4 C -0.005 4.005 5 C -0.520 4.520 6 H 0.030 0.970 7 C -0.003 4.003 8 N -0.956 5.956 9 Si 0.952 3.048 10 H -0.267 1.267 11 H -0.288 1.288 12 H -0.243 1.243 13 C 0.078 3.922 14 N -0.693 5.693 15 C 0.033 3.967 16 C 0.107 3.893 17 H 0.087 0.913 18 O -0.556 6.556 19 C 0.079 3.921 20 N -0.286 5.286 21 C -0.041 4.041 22 C -0.073 4.073 23 N -0.328 5.328 24 N -0.105 5.105 25 H 0.030 0.970 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.018 0.982 29 H 0.019 0.981 30 H 0.264 0.736 31 H 0.069 0.931 32 H 0.038 0.962 33 H 0.341 0.659 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.384 0.616 37 H 0.156 0.844 38 H 0.121 0.879 39 H 0.236 0.764 40 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.849 -10.738 27.990 29.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.092 4.092 3 H 0.065 0.935 4 C -0.043 4.043 5 C -0.558 4.558 6 H 0.049 0.951 7 C -0.199 4.199 8 N -0.598 5.598 9 Si 0.776 3.224 10 H -0.192 1.192 11 H -0.214 1.214 12 H -0.167 1.167 13 C -0.051 4.051 14 N -0.325 5.325 15 C -0.097 4.097 16 C 0.046 3.954 17 H 0.105 0.895 18 O -0.362 6.362 19 C -0.042 4.042 20 N -0.081 5.081 21 C -0.192 4.192 22 C -0.230 4.230 23 N -0.193 5.193 24 N -0.084 5.084 25 H 0.049 0.951 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.036 0.964 29 H 0.038 0.962 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.056 0.944 33 H 0.160 0.840 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.232 0.768 37 H 0.174 0.826 38 H 0.139 0.861 39 H 0.253 0.747 40 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 1.406 -8.804 27.272 28.692 hybrid contribution -0.337 -1.987 -0.551 2.090 sum 1.069 -10.792 26.721 28.837 Atomic orbital electron populations 1.21660 0.95576 1.01022 1.00410 1.20900 0.95814 0.98941 0.93591 0.93492 1.19555 0.96058 0.95655 0.93058 1.21480 1.34315 1.08599 0.91443 0.95150 1.26078 0.97088 1.01239 0.95478 1.70093 1.49158 1.41763 0.98738 0.85628 0.79276 0.79207 0.78318 1.19185 1.21406 1.16677 1.21877 1.00235 0.94350 0.88626 1.60312 1.20186 1.50670 1.01341 1.22606 1.02263 0.95978 0.88837 1.22066 0.98493 0.83699 0.91126 0.89539 1.86719 1.26169 1.26988 1.96345 1.23200 1.02762 0.97424 0.80767 1.47704 1.35097 1.07277 1.17973 1.24451 1.01282 1.03844 0.89661 1.24250 1.05821 0.88779 1.04179 1.75113 1.12425 1.27805 1.03998 1.78452 1.20869 0.96818 1.12259 0.95073 0.92851 0.91986 0.96400 0.96219 0.92720 0.91265 0.94376 0.83987 0.89174 0.91945 0.76778 0.82599 0.86131 0.74749 0.77057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.58 8.77 71.98 0.63 -3.94 16 2 C -0.07 -2.75 2.55 -10.79 -0.03 -2.78 16 3 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 4 C -0.01 -0.25 3.52 29.85 0.10 -0.14 16 5 C -0.52 -29.94 8.96 25.60 0.23 -29.71 16 6 H 0.03 1.95 7.30 -2.91 -0.02 1.93 16 7 C 0.00 -0.18 5.47 84.65 0.46 0.28 16 8 N -0.96 -60.76 13.96 21.45 0.30 -60.46 16 9 Si 0.95 43.96 27.47 68.60 1.88 45.84 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 12 H -0.24 -10.24 6.54 99.48 0.65 -9.59 16 13 C 0.08 2.12 5.14 86.30 0.44 2.57 16 14 N -0.69 -15.74 6.37 -513.89 -3.27 -19.02 16 15 C 0.03 0.44 5.35 86.30 0.46 0.90 16 16 C 0.11 1.45 3.37 30.60 0.10 1.55 16 17 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 18 O -0.56 -11.74 12.24 -148.98 -1.82 -13.57 16 19 C 0.08 0.56 6.14 86.38 0.53 1.09 16 20 N -0.29 -4.28 3.44 -347.74 -1.20 -5.48 16 21 C -0.04 -0.43 11.57 83.49 0.97 0.54 16 22 C -0.07 -1.15 12.06 83.73 1.01 -0.14 16 23 N -0.33 -8.46 12.41 -58.25 -0.72 -9.18 16 24 N -0.10 -2.59 12.10 37.02 0.45 -2.14 16 25 H 0.03 1.31 6.95 -2.38 -0.02 1.29 16 26 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.06 1.83 6.68 -2.39 -0.02 1.81 16 28 H 0.02 0.80 7.20 -2.38 -0.02 0.78 16 29 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 30 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 31 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.34 7.79 6.98 -89.69 -0.63 7.16 16 34 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.38 5.96 9.05 -74.06 -0.67 5.29 16 37 H 0.16 -0.20 8.07 -2.38 -0.02 -0.22 16 38 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.24 -0.12 8.06 -2.91 -0.02 -0.14 16 40 H 0.21 1.82 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -81.79 330.97 0.22 -81.57 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -0.31 Total: 12.23 kcal Atomic # 6 Polarization: -34.70 SS G_CDS: 4.92 Total: -29.79 kcal Atomic # 7 Polarization: -91.84 SS G_CDS: -4.44 Total: -96.28 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: -1.82 Total: -13.57 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.88 Total: 45.84 kcal Total: -81.79 0.22 -81.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352865193.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.014 kcal (2) G-P(sol) polarization free energy of solvation -81.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds