Wall clock time and date at job start Mon Mar 30 2020 00:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47406 * 2 1 4 4 C 1.53008 * 109.47180 * 120.00178 * 2 1 3 5 5 C 1.50694 * 109.46650 * 294.99819 * 4 2 1 6 6 H 1.08003 * 120.00498 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99879 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00472 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99787 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47172 * 90.00326 * 9 7 5 11 11 H 1.48505 * 109.47296 * 209.99710 * 9 7 5 12 12 H 1.48499 * 109.47470 * 330.00022 * 9 7 5 13 13 C 1.53008 * 109.47083 * 239.99726 * 2 1 3 14 14 N 1.46902 * 109.46622 * 65.00316 * 13 2 1 15 15 C 1.46906 * 110.99573 * 179.97438 * 14 13 2 16 16 C 1.52998 * 109.47020 * 179.97438 * 15 14 13 17 17 H 1.09001 * 109.47293 * 305.00104 * 16 15 14 18 18 O 1.42906 * 109.47024 * 64.99964 * 16 15 14 19 19 C 1.52994 * 109.47364 * 184.99828 * 16 15 14 20 20 N 1.46498 * 109.47663 * 175.00027 * 19 16 15 21 21 C 1.35308 * 125.86978 * 125.00077 * 20 19 16 22 22 C 1.35354 * 106.17393 * 180.02562 * 21 20 19 23 23 N 1.33763 * 106.49721 * 0.02562 * 22 21 20 24 24 N 1.28635 * 108.88811 * 359.73394 * 23 22 21 25 25 H 1.08994 * 109.47490 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47025 * 300.00311 * 1 2 3 27 27 H 1.09007 * 109.47182 * 59.99862 * 1 2 3 28 28 H 1.09005 * 109.46614 * 54.99566 * 4 2 1 29 29 H 1.08993 * 109.46898 * 174.99917 * 4 2 1 30 30 H 0.97000 * 120.00438 * 179.97438 * 8 7 5 31 31 H 1.08990 * 109.46924 * 305.00455 * 13 2 1 32 32 H 1.09004 * 109.46978 * 185.00332 * 13 2 1 33 33 H 1.00896 * 111.00219 * 303.95583 * 14 13 2 34 34 H 1.09002 * 109.46991 * 299.99841 * 15 14 13 35 35 H 1.09000 * 109.47202 * 60.00133 * 15 14 13 36 36 H 0.96700 * 113.99774 * 59.99765 * 18 16 15 37 37 H 1.09003 * 109.47286 * 295.00169 * 19 16 15 38 38 H 1.09005 * 109.46665 * 54.99838 * 19 16 15 39 39 H 1.08006 * 126.91516 * 0.02562 * 21 20 19 40 40 H 1.08000 * 126.74869 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0570 2.4765 6 1 1.0806 0.9746 2.3756 7 6 1.9923 -0.4022 3.7283 8 7 1.6448 0.2772 4.7994 9 14 2.9614 -1.9897 3.9028 10 1 4.4151 -1.6873 3.8788 11 1 2.6131 -2.6433 5.1900 12 1 2.6265 -2.9003 2.7787 13 6 2.0399 -0.7213 -1.2493 14 7 1.6513 0.0374 -2.4456 15 6 2.1257 -0.6266 -3.6672 16 6 1.7023 0.1908 -4.8892 17 1 0.6232 0.3431 -4.8684 18 8 2.3627 1.4579 -4.8668 19 6 2.0866 -0.5620 -6.1645 20 7 1.5762 0.1617 -7.3315 21 6 2.3108 0.5825 -8.3871 22 6 1.4464 1.2004 -9.2256 23 7 0.2414 1.1288 -8.6493 24 7 0.3512 0.5028 -7.5309 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.6052 -1.7199 1.2951 29 1 3.1262 -0.7995 1.2056 30 1 1.8915 -0.0461 5.6800 31 1 1.6053 -1.7198 -1.2951 32 1 3.1263 -0.7996 -1.2056 33 1 0.6528 0.1794 -2.4753 34 1 3.2127 -0.7038 -3.6400 35 1 1.6920 -1.6246 -3.7301 36 1 3.3278 1.3988 -4.8834 37 1 3.1722 -0.6365 -6.2294 38 1 1.6546 -1.5625 -6.1398 39 1 3.3731 0.4516 -8.5315 40 1 1.6832 1.6613 -10.1731 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352865199.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:18 Heat of formation + Delta-G solvation = 38.982402 kcal Electronic energy + Delta-G solvation = -19887.952957 eV Core-core repulsion = 16739.806522 eV Total energy + Delta-G solvation = -3148.146436 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.49552 -38.68909 -36.73781 -34.62299 -33.91924 -32.07538 -31.30817 -30.27055 -27.70242 -26.61403 -24.72423 -23.12104 -22.48653 -21.87501 -21.53231 -19.09007 -18.19440 -17.10286 -16.93634 -16.62234 -15.87019 -15.43895 -15.11926 -14.88709 -14.54654 -14.20030 -14.01692 -13.62481 -12.95625 -12.80116 -12.71037 -12.14448 -12.00564 -11.98571 -11.76252 -11.55714 -11.16368 -11.03051 -10.88102 -10.73344 -10.45105 -10.16252 -9.94346 -9.69646 -9.66121 -9.46466 -9.08281 -8.53288 -8.34169 -6.03137 -4.00322 1.31979 1.96325 2.34186 3.29095 3.36728 3.39324 3.67900 3.80361 4.16297 4.21081 4.44849 4.53788 4.58338 4.67390 4.72304 4.87518 4.93773 5.24745 5.30009 5.34295 5.53125 5.57991 5.65608 5.87428 5.90544 6.07369 6.22505 6.31538 6.41088 6.71166 6.93210 7.02439 7.11033 7.26288 7.27456 7.41983 7.50382 7.80872 8.25043 8.56082 9.02756 9.59364 11.10301 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.052806 B = 0.002754 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.119835 B =10164.658010 C =10375.269030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.076 4.076 3 H 0.072 0.928 4 C -0.008 4.008 5 C -0.513 4.513 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.904 5.904 9 Si 0.879 3.121 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.062 3.938 14 N -0.679 5.679 15 C 0.030 3.970 16 C 0.100 3.900 17 H 0.115 0.885 18 O -0.537 6.537 19 C 0.080 3.920 20 N -0.281 5.281 21 C -0.050 4.050 22 C -0.054 4.054 23 N -0.273 5.273 24 N -0.080 5.080 25 H 0.040 0.960 26 H 0.069 0.931 27 H 0.035 0.965 28 H 0.013 0.987 29 H 0.010 0.990 30 H 0.262 0.738 31 H 0.024 0.976 32 H 0.067 0.933 33 H 0.343 0.657 34 H 0.078 0.922 35 H 0.039 0.961 36 H 0.372 0.628 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.189 0.811 40 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.949 -4.051 -26.057 26.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.094 4.094 3 H 0.091 0.909 4 C -0.046 4.046 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.544 5.544 9 Si 0.707 3.293 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.066 4.066 14 N -0.311 5.311 15 C -0.101 4.101 16 C 0.039 3.961 17 H 0.132 0.868 18 O -0.341 6.341 19 C -0.042 4.042 20 N -0.075 5.075 21 C -0.201 4.201 22 C -0.211 4.211 23 N -0.139 5.139 24 N -0.060 5.060 25 H 0.059 0.941 26 H 0.088 0.912 27 H 0.054 0.946 28 H 0.032 0.968 29 H 0.028 0.972 30 H 0.072 0.928 31 H 0.042 0.958 32 H 0.085 0.915 33 H 0.163 0.837 34 H 0.096 0.904 35 H 0.057 0.943 36 H 0.219 0.781 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.206 0.794 40 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 3.445 -3.446 -25.225 25.691 hybrid contribution 1.820 -1.965 -0.173 2.684 sum 5.265 -5.411 -25.398 26.497 Atomic orbital electron populations 1.21754 0.96133 1.00506 1.00995 1.21032 0.95326 1.00254 0.92838 0.90926 1.19600 0.95530 0.96019 0.93439 1.21129 1.35424 1.09515 0.89067 0.90783 1.25040 0.95719 0.96907 0.95972 1.69914 1.47182 1.39248 0.98015 0.86799 0.80631 0.84496 0.77424 1.20391 1.21488 1.19181 1.22196 1.00260 0.94421 0.89732 1.60424 1.20215 1.49943 1.00560 1.22548 1.01386 0.95428 0.90740 1.22252 0.99635 0.84335 0.89913 0.86753 1.86747 1.23293 1.27533 1.96540 1.22965 1.01203 0.96624 0.83415 1.47308 1.06712 1.37436 1.16013 1.23662 1.00760 1.05528 0.90156 1.23615 0.89484 1.05212 1.02802 1.75128 1.22882 1.14205 1.01674 1.78302 1.00036 1.14092 1.13602 0.94081 0.91224 0.94637 0.96832 0.97170 0.92808 0.95767 0.91492 0.83715 0.90367 0.94250 0.78075 0.87091 0.87261 0.79432 0.79453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 8.77 37.15 0.33 -2.14 16 2 C -0.08 -1.45 2.55 -90.62 -0.23 -1.68 16 3 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 4 C -0.01 -0.19 3.52 -27.88 -0.10 -0.28 16 5 C -0.51 -14.39 8.96 -34.44 -0.31 -14.70 16 6 H 0.07 2.24 7.30 -52.48 -0.38 1.85 16 7 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 8 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 9 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 13 C 0.06 0.94 5.14 -3.82 -0.02 0.92 16 14 N -0.68 -8.66 6.45 -113.77 -0.73 -9.39 16 15 C 0.03 0.26 5.32 -3.82 -0.02 0.24 16 16 C 0.10 0.82 3.23 -26.74 -0.09 0.73 16 17 H 0.11 1.19 8.00 -51.93 -0.42 0.77 16 18 O -0.54 -5.39 13.23 -35.23 -0.47 -5.86 16 19 C 0.08 0.44 6.09 -4.05 -0.02 0.41 16 20 N -0.28 -2.45 3.39 -61.26 -0.21 -2.66 16 21 C -0.05 -0.34 11.57 -17.05 -0.20 -0.54 16 22 C -0.05 -0.47 12.05 -17.74 -0.21 -0.68 16 23 N -0.27 -3.49 12.41 30.23 0.38 -3.12 16 24 N -0.08 -1.00 12.83 60.35 0.77 -0.23 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 1.43 6.95 -51.93 -0.36 1.07 16 27 H 0.03 0.55 6.68 -51.92 -0.35 0.20 16 28 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 16 29 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.34 4.41 6.98 -39.29 -0.27 4.13 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.37 2.30 9.05 45.56 0.41 2.72 16 37 H 0.11 0.24 8.07 -51.93 -0.42 -0.18 16 38 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.19 0.48 8.06 -52.48 -0.42 0.06 16 40 H 0.19 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 332.38 15.07 5.01 5.01 Total: -1.00 -35.45 332.38 -5.64 -41.09 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -5.53 Total: 1.31 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: -0.97 Total: -15.96 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.98 Total: -42.49 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -0.47 Total: -5.86 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.45 -5.64 -41.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352865199.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.069 kcal (2) G-P(sol) polarization free energy of solvation -35.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds