Wall clock time and date at job start Mon Mar 30 2020 00:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47406 * 2 1 4 4 C 1.53008 * 109.47180 * 120.00178 * 2 1 3 5 5 C 1.50694 * 109.46650 * 294.99819 * 4 2 1 6 6 H 1.08003 * 120.00498 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99879 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00472 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99787 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47172 * 90.00326 * 9 7 5 11 11 H 1.48505 * 109.47296 * 209.99710 * 9 7 5 12 12 H 1.48499 * 109.47470 * 330.00022 * 9 7 5 13 13 C 1.53008 * 109.47083 * 239.99726 * 2 1 3 14 14 N 1.46902 * 109.46622 * 65.00316 * 13 2 1 15 15 C 1.46906 * 110.99573 * 179.97438 * 14 13 2 16 16 C 1.52998 * 109.47020 * 179.97438 * 15 14 13 17 17 H 1.09001 * 109.47293 * 305.00104 * 16 15 14 18 18 O 1.42906 * 109.47024 * 64.99964 * 16 15 14 19 19 C 1.52994 * 109.47364 * 184.99828 * 16 15 14 20 20 N 1.46498 * 109.47663 * 175.00027 * 19 16 15 21 21 C 1.35308 * 125.86978 * 125.00077 * 20 19 16 22 22 C 1.35354 * 106.17393 * 180.02562 * 21 20 19 23 23 N 1.33763 * 106.49721 * 0.02562 * 22 21 20 24 24 N 1.28635 * 108.88811 * 359.73394 * 23 22 21 25 25 H 1.08994 * 109.47490 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47025 * 300.00311 * 1 2 3 27 27 H 1.09007 * 109.47182 * 59.99862 * 1 2 3 28 28 H 1.09005 * 109.46614 * 54.99566 * 4 2 1 29 29 H 1.08993 * 109.46898 * 174.99917 * 4 2 1 30 30 H 0.97000 * 120.00438 * 179.97438 * 8 7 5 31 31 H 1.08990 * 109.46924 * 305.00455 * 13 2 1 32 32 H 1.09004 * 109.46978 * 185.00332 * 13 2 1 33 33 H 1.00896 * 111.00219 * 303.95583 * 14 13 2 34 34 H 1.09002 * 109.46991 * 299.99841 * 15 14 13 35 35 H 1.09000 * 109.47202 * 60.00133 * 15 14 13 36 36 H 0.96700 * 113.99774 * 59.99765 * 18 16 15 37 37 H 1.09003 * 109.47286 * 295.00169 * 19 16 15 38 38 H 1.09005 * 109.46665 * 54.99838 * 19 16 15 39 39 H 1.08006 * 126.91516 * 0.02562 * 21 20 19 40 40 H 1.08000 * 126.74869 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0570 2.4765 6 1 1.0806 0.9746 2.3756 7 6 1.9923 -0.4022 3.7283 8 7 1.6448 0.2772 4.7994 9 14 2.9614 -1.9897 3.9028 10 1 4.4151 -1.6873 3.8788 11 1 2.6131 -2.6433 5.1900 12 1 2.6265 -2.9003 2.7787 13 6 2.0399 -0.7213 -1.2493 14 7 1.6513 0.0374 -2.4456 15 6 2.1257 -0.6266 -3.6672 16 6 1.7023 0.1908 -4.8892 17 1 0.6232 0.3431 -4.8684 18 8 2.3627 1.4579 -4.8668 19 6 2.0866 -0.5620 -6.1645 20 7 1.5762 0.1617 -7.3315 21 6 2.3108 0.5825 -8.3871 22 6 1.4464 1.2004 -9.2256 23 7 0.2414 1.1288 -8.6493 24 7 0.3512 0.5028 -7.5309 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.6052 -1.7199 1.2951 29 1 3.1262 -0.7995 1.2056 30 1 1.8915 -0.0461 5.6800 31 1 1.6053 -1.7198 -1.2951 32 1 3.1263 -0.7996 -1.2056 33 1 0.6528 0.1794 -2.4753 34 1 3.2127 -0.7038 -3.6400 35 1 1.6920 -1.6246 -3.7301 36 1 3.3278 1.3988 -4.8834 37 1 3.1722 -0.6365 -6.2294 38 1 1.6546 -1.5625 -6.1398 39 1 3.3731 0.4516 -8.5315 40 1 1.6832 1.6613 -10.1731 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352865199.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:18 Heat of formation + Delta-G solvation = 9.192188 kcal Electronic energy + Delta-G solvation = -19889.244758 eV Core-core repulsion = 16739.806522 eV Total energy + Delta-G solvation = -3149.438236 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.12416 -39.43137 -37.98269 -35.41330 -35.22158 -33.91569 -31.92124 -31.13056 -29.40025 -27.65468 -25.96781 -23.93798 -23.56634 -22.91575 -22.20096 -20.64975 -18.97880 -18.78727 -17.62918 -17.48579 -16.57039 -16.48741 -16.21740 -15.75341 -15.59269 -15.46866 -14.97010 -14.80854 -14.51822 -14.01399 -13.69007 -13.51124 -13.34655 -12.97943 -12.83219 -12.64264 -12.40474 -12.20598 -12.09488 -11.80243 -11.75118 -11.63088 -11.44318 -11.23276 -11.07194 -10.73285 -10.68648 -10.27369 -9.28521 -8.25517 -6.28453 0.73234 1.36393 1.38595 1.49334 1.50195 1.68377 2.38308 3.00777 3.09602 3.33993 3.66582 3.71440 3.86930 3.97217 4.12526 4.21393 4.24452 4.35642 4.37778 4.38786 4.41100 4.65948 4.76574 4.79370 4.82398 5.00563 5.02432 5.05204 5.28925 5.31955 5.36196 5.54906 5.68951 5.71907 5.73559 6.12124 6.35104 6.42377 6.79742 6.85164 7.35059 7.58119 8.91485 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.052806 B = 0.002754 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.119835 B =10164.658010 C =10375.269030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.073 4.073 3 H 0.048 0.952 4 C -0.005 4.005 5 C -0.520 4.520 6 H 0.030 0.970 7 C -0.003 4.003 8 N -0.956 5.956 9 Si 0.952 3.048 10 H -0.267 1.267 11 H -0.288 1.288 12 H -0.243 1.243 13 C 0.077 3.923 14 N -0.693 5.693 15 C 0.033 3.967 16 C 0.107 3.893 17 H 0.084 0.916 18 O -0.565 6.565 19 C 0.080 3.920 20 N -0.280 5.280 21 C -0.031 4.031 22 C -0.073 4.073 23 N -0.321 5.321 24 N -0.130 5.130 25 H 0.051 0.949 26 H 0.031 0.969 27 H 0.061 0.939 28 H 0.020 0.980 29 H 0.018 0.982 30 H 0.264 0.736 31 H 0.035 0.965 32 H 0.073 0.927 33 H 0.340 0.660 34 H 0.098 0.902 35 H 0.057 0.943 36 H 0.388 0.612 37 H 0.156 0.844 38 H 0.125 0.875 39 H 0.237 0.763 40 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.566 -6.517 -28.314 30.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.092 4.092 3 H 0.067 0.933 4 C -0.043 4.043 5 C -0.558 4.558 6 H 0.049 0.951 7 C -0.199 4.199 8 N -0.597 5.597 9 Si 0.776 3.224 10 H -0.192 1.192 11 H -0.214 1.214 12 H -0.167 1.167 13 C -0.052 4.052 14 N -0.325 5.325 15 C -0.097 4.097 16 C 0.046 3.954 17 H 0.102 0.898 18 O -0.372 6.372 19 C -0.041 4.041 20 N -0.073 5.073 21 C -0.183 4.183 22 C -0.231 4.231 23 N -0.186 5.186 24 N -0.110 5.110 25 H 0.070 0.930 26 H 0.050 0.950 27 H 0.079 0.921 28 H 0.038 0.962 29 H 0.036 0.964 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.091 0.909 33 H 0.159 0.841 34 H 0.117 0.883 35 H 0.075 0.925 36 H 0.238 0.762 37 H 0.173 0.827 38 H 0.143 0.857 39 H 0.254 0.746 40 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 6.053 -5.919 -27.502 28.775 hybrid contribution 1.012 -1.075 0.496 1.558 sum 7.065 -6.994 -27.005 28.777 Atomic orbital electron populations 1.21666 0.95738 1.00948 1.00415 1.20901 0.95698 0.99013 0.93598 0.93306 1.19554 0.95966 0.95774 0.93028 1.21478 1.34387 1.08543 0.91440 0.95139 1.26076 0.97132 1.01186 0.95474 1.70088 1.49209 1.41702 0.98746 0.85628 0.79110 0.79648 0.78032 1.19204 1.21401 1.16676 1.21891 1.00409 0.94255 0.88597 1.60358 1.20146 1.50602 1.01431 1.22618 1.02538 0.95748 0.88750 1.22056 0.97966 0.84021 0.91315 0.89793 1.86710 1.24903 1.28865 1.96727 1.23194 1.03790 0.96178 0.80925 1.47586 1.06027 1.36787 1.16949 1.24423 1.02384 1.02976 0.88501 1.24248 0.88798 1.05810 1.04207 1.75049 1.25402 1.15535 1.02592 1.78233 1.02232 1.16238 1.14271 0.93033 0.94971 0.92061 0.96200 0.96364 0.92713 0.94653 0.90853 0.84104 0.88345 0.92540 0.76215 0.82672 0.85741 0.74640 0.76960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.72 8.77 71.98 0.63 -4.09 16 2 C -0.07 -2.76 2.55 -10.79 -0.03 -2.78 16 3 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 4 C -0.01 -0.24 3.52 29.85 0.10 -0.14 16 5 C -0.52 -29.98 8.96 25.60 0.23 -29.75 16 6 H 0.03 1.96 7.30 -2.91 -0.02 1.93 16 7 C 0.00 -0.17 5.47 84.65 0.46 0.29 16 8 N -0.96 -60.78 13.96 21.45 0.30 -60.48 16 9 Si 0.95 43.99 27.47 68.60 1.88 45.88 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.24 -10.23 6.54 99.48 0.65 -9.58 16 13 C 0.08 2.13 5.14 86.31 0.44 2.57 16 14 N -0.69 -16.11 6.45 -513.86 -3.31 -19.43 16 15 C 0.03 0.46 5.32 86.30 0.46 0.92 16 16 C 0.11 1.51 3.23 30.59 0.10 1.61 16 17 H 0.08 1.71 8.00 -2.39 -0.02 1.69 16 18 O -0.56 -10.22 13.23 -148.98 -1.97 -12.19 16 19 C 0.08 0.58 6.09 86.38 0.53 1.11 16 20 N -0.28 -4.23 3.39 -347.73 -1.18 -5.41 16 21 C -0.03 -0.33 11.57 83.49 0.97 0.64 16 22 C -0.07 -1.15 12.05 83.73 1.01 -0.14 16 23 N -0.32 -8.25 12.41 -58.26 -0.72 -8.98 16 24 N -0.13 -3.24 12.83 37.02 0.47 -2.77 16 25 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.03 1.37 6.95 -2.39 -0.02 1.35 16 27 H 0.06 1.87 6.68 -2.38 -0.02 1.85 16 28 H 0.02 0.88 7.20 -2.38 -0.02 0.86 16 29 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 30 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 31 H 0.04 0.90 8.14 -2.39 -0.02 0.89 16 32 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 33 H 0.34 8.22 6.98 -89.70 -0.63 7.59 16 34 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.39 3.63 9.05 -74.06 -0.67 2.96 16 37 H 0.16 -0.24 8.07 -2.39 -0.02 -0.26 16 38 H 0.12 0.58 8.14 -2.38 -0.02 0.56 16 39 H 0.24 -0.14 8.06 -2.91 -0.02 -0.16 16 40 H 0.21 1.83 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -82.34 332.38 0.07 -82.27 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -0.31 Total: 10.87 kcal Atomic # 6 Polarization: -34.67 SS G_CDS: 4.91 Total: -29.77 kcal Atomic # 7 Polarization: -92.61 SS G_CDS: -4.44 Total: -97.05 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -1.97 Total: -12.19 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.88 Total: 45.88 kcal Total: -82.34 0.07 -82.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352865199.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.461 kcal (2) G-P(sol) polarization free energy of solvation -82.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds