Wall clock time and date at job start Mon Mar 30 2020 00:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46503 * 109.47019 * 2 1 4 4 C 1.36731 * 127.14025 * 84.99893 * 3 2 1 5 5 C 1.50703 * 126.34418 * 359.97438 * 4 3 2 6 6 H 1.08998 * 109.47462 * 359.71984 * 5 4 3 7 7 C 1.52997 * 109.46821 * 119.72212 * 5 4 3 8 8 C 1.53005 * 109.47156 * 239.71457 * 5 4 3 9 9 C 1.50699 * 109.46797 * 175.00115 * 8 5 4 10 10 H 1.07999 * 120.00534 * 0.02562 * 9 8 5 11 11 C 1.37884 * 119.99724 * 180.02562 * 9 8 5 12 12 N 1.31515 * 119.99907 * 0.27692 * 11 9 8 13 13 Si 1.86801 * 119.99990 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47229 * 89.99899 * 13 11 9 15 15 H 1.48495 * 109.47187 * 210.00236 * 13 11 9 16 16 H 1.48508 * 109.46981 * 329.99931 * 13 11 9 17 17 N 1.30293 * 107.30692 * 179.73589 * 4 3 2 18 18 N 1.28524 * 110.05577 * 0.25436 * 17 4 3 19 19 C 1.31220 * 109.85607 * 0.02562 * 18 17 4 20 20 N 1.38584 * 126.47145 * 179.97438 * 19 18 17 21 21 C 1.46899 * 111.00212 * 65.73500 * 20 19 18 22 22 O 1.46305 * 111.00126 * 301.77990 * 20 19 18 23 23 C 1.42891 * 114.00053 * 244.35697 * 22 20 19 24 24 H 1.08994 * 109.47327 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46958 * 300.00763 * 1 2 3 26 26 H 1.09006 * 109.46563 * 60.00226 * 1 2 3 27 27 H 1.08994 * 109.47219 * 239.99731 * 2 1 3 28 28 H 1.08993 * 109.46641 * 119.99468 * 2 1 3 29 29 H 1.09001 * 109.47840 * 60.00174 * 7 5 4 30 30 H 1.09008 * 109.47166 * 180.02562 * 7 5 4 31 31 H 1.09001 * 109.47300 * 299.99384 * 7 5 4 32 32 H 1.09001 * 109.46888 * 55.00392 * 8 5 4 33 33 H 1.08989 * 109.47512 * 295.00429 * 8 5 4 34 34 H 0.96998 * 119.99907 * 359.72565 * 12 11 9 35 35 H 1.09002 * 109.46764 * 59.99579 * 21 20 19 36 36 H 1.08996 * 109.47689 * 180.02562 * 21 20 19 37 37 H 1.09000 * 109.46769 * 300.00194 * 21 20 19 38 38 H 1.09004 * 109.47494 * 305.11577 * 23 22 20 39 39 H 1.09001 * 109.47730 * 65.12312 * 23 22 20 40 40 H 1.09001 * 109.47157 * 185.12339 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2039 2.1913 1.0858 5 6 1.9419 1.8295 2.5251 6 1 1.5693 0.8067 2.5807 7 6 3.2416 1.9430 3.3242 8 6 0.8991 2.7846 3.1093 9 6 0.5465 2.3486 4.5081 10 1 1.0191 1.4777 4.9377 11 6 -0.3797 3.0617 5.2396 12 7 -0.9593 4.1190 4.7145 13 14 -0.8163 2.5217 6.9737 14 1 0.0920 3.1862 7.9426 15 1 -2.2208 2.9011 7.2715 16 1 -0.6672 1.0484 7.0857 17 7 2.6542 3.3321 0.6459 18 7 2.7598 3.3000 -0.6345 19 6 2.3790 2.1275 -1.0840 20 7 2.3536 1.7216 -2.4088 21 6 3.7119 1.6501 -2.9636 22 8 1.5054 2.6033 -3.2111 23 6 0.3544 1.9596 -3.7615 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.6142 2.9659 3.2688 30 1 3.0523 1.6809 4.3652 31 1 3.9846 1.2626 2.9081 32 1 0.0039 2.7696 2.4875 33 1 1.3063 3.7953 3.1356 34 1 -0.7323 4.3996 3.8142 35 1 4.3013 0.9347 -2.3901 36 1 3.6630 1.3297 -4.0043 37 1 4.1793 2.6332 -2.9081 38 1 0.6658 1.0864 -4.3349 39 1 -0.3079 1.6469 -2.9543 40 1 -0.1726 2.6545 -4.4153 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356544247.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:21 Heat of formation + Delta-G solvation = 73.546599 kcal Electronic energy + Delta-G solvation = -21364.380787 eV Core-core repulsion = 18217.733167 eV Total energy + Delta-G solvation = -3146.647620 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.71406 -37.64076 -35.82581 -35.27881 -33.92863 -32.28701 -30.44064 -28.83750 -26.79368 -26.64135 -25.33257 -24.20824 -23.65333 -22.11111 -20.74729 -19.38641 -17.57835 -17.13507 -16.66644 -16.02917 -15.51603 -15.28749 -14.67697 -14.34866 -13.90236 -13.72789 -13.49355 -13.29664 -13.12267 -12.91065 -12.41771 -12.30906 -11.97464 -11.85178 -11.47836 -11.32328 -11.18724 -10.95237 -10.80585 -10.51044 -10.33074 -10.18252 -10.11571 -9.93379 -9.88908 -9.19326 -8.74931 -8.49581 -8.32985 -6.35762 -4.06472 1.52112 2.13979 2.91567 3.21178 3.43286 3.46346 3.61599 4.45795 4.52312 4.57890 4.79105 4.90816 5.08674 5.17146 5.20963 5.23122 5.30904 5.35301 5.40724 5.42879 5.51411 5.55397 5.61486 5.66897 5.89948 5.95357 6.04853 6.13415 6.20474 6.47082 6.57862 6.67898 6.74236 6.93344 7.24966 7.31959 7.50880 8.13969 8.44266 8.85853 9.04173 9.66217 11.04537 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.027750 B = 0.004770 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.771323 B = 5868.042333 C = 6034.723166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.108 3.892 3 N -0.461 5.461 4 C 0.224 3.776 5 C 0.004 3.996 6 H 0.076 0.924 7 C -0.126 4.126 8 C 0.026 3.974 9 C -0.601 4.601 10 H 0.053 0.947 11 C 0.017 3.983 12 N -0.910 5.910 13 Si 1.071 2.929 14 H -0.287 1.287 15 H -0.285 1.285 16 H -0.289 1.289 17 N -0.288 5.288 18 N -0.283 5.283 19 C 0.294 3.706 20 N -0.294 5.294 21 C 0.029 3.971 22 O -0.234 6.234 23 C 0.034 3.966 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.033 0.967 32 H 0.004 0.996 33 H 0.023 0.977 34 H 0.271 0.729 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.058 0.942 38 H 0.050 0.950 39 H 0.043 0.957 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.580 -11.838 -14.331 19.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.015 4.015 3 N -0.156 5.156 4 C -0.042 4.042 5 C -0.017 4.017 6 H 0.094 0.906 7 C -0.184 4.184 8 C -0.012 4.012 9 C -0.639 4.639 10 H 0.071 0.929 11 C -0.188 4.188 12 N -0.546 5.546 13 Si 0.899 3.101 14 H -0.214 1.214 15 H -0.211 1.211 16 H -0.215 1.215 17 N -0.128 5.128 18 N -0.129 5.129 19 C -0.062 4.062 20 N -0.063 5.063 21 C -0.118 4.118 22 O -0.233 6.233 23 C -0.064 4.064 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.052 0.948 32 H 0.023 0.977 33 H 0.042 0.958 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.945 -10.329 -13.193 17.470 hybrid contribution 0.570 -1.177 -1.558 2.034 sum 5.515 -11.506 -14.751 19.504 Atomic orbital electron populations 1.22168 0.93586 1.03264 1.03781 1.21842 0.96237 0.78876 1.04537 1.46463 1.49196 1.13881 1.06048 1.25813 0.98959 0.87088 0.92367 1.19897 0.98928 1.01296 0.81567 0.90617 1.21684 0.94312 1.01765 1.00675 1.19226 0.91627 0.94382 0.95972 1.21955 1.27439 1.15177 0.99359 0.92895 1.25815 0.93648 0.94306 1.04982 1.70723 1.41957 1.24108 1.17798 0.83521 0.76666 0.75205 0.74692 1.21388 1.21077 1.21495 1.74104 1.18554 1.18169 1.01984 1.74571 1.17899 1.16125 1.04340 1.22112 1.06276 0.90118 0.87711 1.63790 1.11423 1.37348 0.93758 1.22632 0.85324 1.02777 1.01106 1.90971 1.37196 1.29359 1.65815 1.22774 0.87167 0.98974 0.97471 0.90301 0.90790 0.92156 0.88564 0.88607 0.92040 0.90404 0.94791 0.97730 0.95840 0.91865 0.89408 0.89468 0.92334 0.93147 0.93813 0.88638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 10.24 37.16 0.38 -1.66 16 2 C 0.11 1.30 6.51 -4.04 -0.03 1.28 16 3 N -0.46 -7.71 2.81 -114.08 -0.32 -8.03 16 4 C 0.22 4.50 6.58 -154.02 -1.01 3.49 16 5 C 0.00 0.09 2.71 -91.77 -0.25 -0.16 16 6 H 0.08 1.41 7.07 -51.93 -0.37 1.05 16 7 C -0.13 -2.38 8.98 37.16 0.33 -2.04 16 8 C 0.03 0.66 3.74 -27.88 -0.10 0.56 16 9 C -0.60 -16.33 8.41 -34.44 -0.29 -16.62 16 10 H 0.05 1.38 7.06 -52.49 -0.37 1.00 16 11 C 0.02 0.48 5.46 -17.82 -0.10 0.38 16 12 N -0.91 -27.96 13.65 55.43 0.76 -27.21 16 13 Si 1.07 24.79 29.90 -169.99 -5.08 19.71 16 14 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 17 N -0.29 -6.47 12.18 32.99 0.40 -6.06 16 18 N -0.28 -5.98 12.23 30.32 0.37 -5.61 16 19 C 0.29 5.17 7.00 -318.87 -2.23 2.94 16 20 N -0.29 -4.15 5.07 -68.05 -0.34 -4.50 16 21 C 0.03 0.32 10.05 60.06 0.60 0.92 16 22 O -0.23 -3.48 10.88 -13.93 -0.15 -3.63 16 23 C 0.03 0.36 11.51 101.05 1.16 1.52 16 24 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.06 0.75 7.97 -51.93 -0.41 0.34 16 27 H 0.10 0.94 8.12 -51.93 -0.42 0.52 16 28 H 0.10 1.03 7.46 -51.93 -0.39 0.65 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.08 1.48 6.95 -51.92 -0.36 1.12 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.00 0.12 8.00 -51.93 -0.42 -0.29 16 33 H 0.02 0.66 8.01 -51.94 -0.42 0.24 16 34 H 0.27 8.45 7.22 -40.82 -0.29 8.16 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.04 0.49 7.97 -51.93 -0.41 0.07 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 338.34 15.07 5.10 5.10 Total: -1.00 -34.34 338.34 -7.27 -41.61 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -6.46 Total: -1.96 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -1.53 Total: -9.40 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: 0.86 Total: -51.41 kcal Atomic # 8 Polarization: -3.48 SS G_CDS: -0.15 Total: -3.63 kcal Atomic # 14 Polarization: 24.79 SS G_CDS: -5.08 Total: 19.71 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.34 -7.27 -41.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356544247.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.152 kcal (2) G-P(sol) polarization free energy of solvation -34.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds