Wall clock time and date at job start Mon Mar 30 2020 00:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46503 * 109.47019 * 2 1 4 4 C 1.36731 * 127.14025 * 84.99893 * 3 2 1 5 5 C 1.50703 * 126.34418 * 359.97438 * 4 3 2 6 6 H 1.08998 * 109.47462 * 359.71984 * 5 4 3 7 7 C 1.52997 * 109.46821 * 119.72212 * 5 4 3 8 8 C 1.53005 * 109.47156 * 239.71457 * 5 4 3 9 9 C 1.50699 * 109.46797 * 175.00115 * 8 5 4 10 10 H 1.07999 * 120.00534 * 0.02562 * 9 8 5 11 11 C 1.37884 * 119.99724 * 180.02562 * 9 8 5 12 12 N 1.31515 * 119.99907 * 0.27692 * 11 9 8 13 13 Si 1.86801 * 119.99990 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47229 * 89.99899 * 13 11 9 15 15 H 1.48495 * 109.47187 * 210.00236 * 13 11 9 16 16 H 1.48508 * 109.46981 * 329.99931 * 13 11 9 17 17 N 1.30293 * 107.30692 * 179.73589 * 4 3 2 18 18 N 1.28524 * 110.05577 * 0.25436 * 17 4 3 19 19 C 1.31220 * 109.85607 * 0.02562 * 18 17 4 20 20 N 1.38584 * 126.47145 * 179.97438 * 19 18 17 21 21 C 1.46899 * 111.00212 * 65.73500 * 20 19 18 22 22 O 1.46305 * 111.00126 * 301.77990 * 20 19 18 23 23 C 1.42891 * 114.00053 * 244.35697 * 22 20 19 24 24 H 1.08994 * 109.47327 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46958 * 300.00763 * 1 2 3 26 26 H 1.09006 * 109.46563 * 60.00226 * 1 2 3 27 27 H 1.08994 * 109.47219 * 239.99731 * 2 1 3 28 28 H 1.08993 * 109.46641 * 119.99468 * 2 1 3 29 29 H 1.09001 * 109.47840 * 60.00174 * 7 5 4 30 30 H 1.09008 * 109.47166 * 180.02562 * 7 5 4 31 31 H 1.09001 * 109.47300 * 299.99384 * 7 5 4 32 32 H 1.09001 * 109.46888 * 55.00392 * 8 5 4 33 33 H 1.08989 * 109.47512 * 295.00429 * 8 5 4 34 34 H 0.96998 * 119.99907 * 359.72565 * 12 11 9 35 35 H 1.09002 * 109.46764 * 59.99579 * 21 20 19 36 36 H 1.08996 * 109.47689 * 180.02562 * 21 20 19 37 37 H 1.09000 * 109.46769 * 300.00194 * 21 20 19 38 38 H 1.09004 * 109.47494 * 305.11577 * 23 22 20 39 39 H 1.09001 * 109.47730 * 65.12312 * 23 22 20 40 40 H 1.09001 * 109.47157 * 185.12339 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2039 2.1913 1.0858 5 6 1.9419 1.8295 2.5251 6 1 1.5693 0.8067 2.5807 7 6 3.2416 1.9430 3.3242 8 6 0.8991 2.7846 3.1093 9 6 0.5465 2.3486 4.5081 10 1 1.0191 1.4777 4.9377 11 6 -0.3797 3.0617 5.2396 12 7 -0.9593 4.1190 4.7145 13 14 -0.8163 2.5217 6.9737 14 1 0.0920 3.1862 7.9426 15 1 -2.2208 2.9011 7.2715 16 1 -0.6672 1.0484 7.0857 17 7 2.6542 3.3321 0.6459 18 7 2.7598 3.3000 -0.6345 19 6 2.3790 2.1275 -1.0840 20 7 2.3536 1.7216 -2.4088 21 6 3.7119 1.6501 -2.9636 22 8 1.5054 2.6033 -3.2111 23 6 0.3544 1.9596 -3.7615 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.6142 2.9659 3.2688 30 1 3.0523 1.6809 4.3652 31 1 3.9846 1.2626 2.9081 32 1 0.0039 2.7696 2.4875 33 1 1.3063 3.7953 3.1356 34 1 -0.7323 4.3996 3.8142 35 1 4.3013 0.9347 -2.3901 36 1 3.6630 1.3297 -4.0043 37 1 4.1793 2.6332 -2.9081 38 1 0.6658 1.0864 -4.3349 39 1 -0.3079 1.6469 -2.9543 40 1 -0.1726 2.6545 -4.4153 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356544247.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:20 Heat of formation + Delta-G solvation = 52.793399 kcal Electronic energy + Delta-G solvation = -21365.280713 eV Core-core repulsion = 18217.733167 eV Total energy + Delta-G solvation = -3147.547546 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.16138 -38.74484 -37.42671 -36.68478 -35.16491 -34.20357 -31.60620 -30.30033 -28.56867 -27.67951 -26.46700 -25.85211 -24.99074 -23.85407 -22.01913 -20.94163 -18.93517 -18.70490 -18.17426 -17.32390 -16.73807 -16.57864 -16.00316 -15.64233 -15.49733 -15.13352 -14.93912 -14.37036 -14.23619 -14.11119 -13.89751 -13.63065 -13.35754 -13.12843 -12.96054 -12.78664 -12.62403 -12.48952 -12.36723 -12.05756 -11.91295 -11.82075 -11.59157 -11.31244 -11.25102 -10.74049 -10.53031 -10.41219 -10.15800 -8.64658 -6.35974 0.22876 0.87375 1.53942 1.57582 1.66623 1.82590 1.90083 2.61145 3.19083 3.21140 3.42523 3.56099 3.81686 3.93717 4.18587 4.24293 4.26793 4.37529 4.37940 4.41143 4.45466 4.49009 4.51118 4.57736 4.71769 4.73083 4.74805 4.93584 4.98551 5.03959 5.09521 5.19956 5.21610 5.29478 5.49910 5.58493 5.94875 5.99999 6.20962 6.55607 7.47933 7.55212 8.74887 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.027750 B = 0.004770 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.771323 B = 5868.042333 C = 6034.723166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.097 3.903 3 N -0.452 5.452 4 C 0.212 3.788 5 C 0.015 3.985 6 H 0.099 0.901 7 C -0.119 4.119 8 C 0.035 3.965 9 C -0.600 4.600 10 H 0.071 0.929 11 C -0.042 4.042 12 N -0.943 5.943 13 Si 1.122 2.878 14 H -0.275 1.275 15 H -0.290 1.290 16 H -0.257 1.257 17 N -0.330 5.330 18 N -0.328 5.328 19 C 0.312 3.688 20 N -0.282 5.282 21 C 0.025 3.975 22 O -0.262 6.262 23 C 0.029 3.971 24 H 0.116 0.884 25 H 0.037 0.963 26 H 0.051 0.949 27 H 0.130 0.870 28 H 0.116 0.884 29 H 0.039 0.961 30 H 0.076 0.924 31 H 0.068 0.932 32 H -0.027 1.027 33 H -0.016 1.016 34 H 0.250 0.750 35 H 0.106 0.894 36 H 0.120 0.880 37 H 0.039 0.961 38 H 0.076 0.924 39 H 0.033 0.967 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.170 -15.302 -14.851 22.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.023 4.023 3 N -0.147 5.147 4 C -0.056 4.056 5 C -0.006 4.006 6 H 0.118 0.882 7 C -0.177 4.177 8 C -0.003 4.003 9 C -0.638 4.638 10 H 0.089 0.911 11 C -0.239 4.239 12 N -0.580 5.580 13 Si 0.942 3.058 14 H -0.201 1.201 15 H -0.216 1.216 16 H -0.182 1.182 17 N -0.170 5.170 18 N -0.174 5.174 19 C -0.045 4.045 20 N -0.053 5.053 21 C -0.122 4.122 22 O -0.262 6.262 23 C -0.068 4.068 24 H 0.134 0.866 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.148 0.852 28 H 0.134 0.866 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.087 0.913 32 H -0.008 1.008 33 H 0.002 0.998 34 H 0.059 0.941 35 H 0.124 0.876 36 H 0.139 0.861 37 H 0.058 0.942 38 H 0.095 0.905 39 H 0.052 0.948 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.554 -13.827 -13.737 20.266 hybrid contribution 0.371 -0.144 -1.575 1.624 sum 5.925 -13.971 -15.312 21.558 Atomic orbital electron populations 1.22144 0.93599 1.04963 1.01530 1.22344 0.96171 0.76590 1.07189 1.46654 1.48156 1.15140 1.04731 1.25525 0.99794 0.87416 0.92897 1.19676 0.98142 1.00737 0.82019 0.88249 1.21612 0.94218 1.01399 1.00505 1.19015 0.91811 0.93815 0.95645 1.22359 1.26550 1.15133 0.99751 0.91065 1.27498 0.93661 0.93660 1.09041 1.70885 1.43882 1.26244 1.17021 0.82898 0.76236 0.76721 0.69903 1.20060 1.21593 1.18156 1.73987 1.20036 1.19923 1.03079 1.74474 1.20444 1.18558 1.03949 1.22574 1.03591 0.89105 0.89257 1.64132 1.12943 1.36137 0.92070 1.22858 0.83688 1.02343 1.03272 1.90956 1.38526 1.30994 1.65721 1.23014 0.85839 1.00414 0.97493 0.86566 0.94426 0.92970 0.85243 0.86626 0.94181 0.90529 0.91325 1.00825 0.99766 0.94098 0.87611 0.86146 0.94217 0.90518 0.94789 0.86787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.63 10.24 71.98 0.74 -2.89 16 2 C 0.10 2.07 6.51 86.38 0.56 2.63 16 3 N -0.45 -14.66 2.81 -514.85 -1.45 -16.11 16 4 C 0.21 8.60 6.58 137.64 0.91 9.51 16 5 C 0.02 0.62 2.71 -11.54 -0.03 0.59 16 6 H 0.10 3.54 7.07 -2.39 -0.02 3.52 16 7 C -0.12 -4.40 8.98 71.98 0.65 -3.75 16 8 C 0.04 1.87 3.74 29.85 0.11 1.98 16 9 C -0.60 -32.82 8.41 25.60 0.22 -32.60 16 10 H 0.07 3.58 7.06 -2.91 -0.02 3.56 16 11 C -0.04 -2.41 5.46 84.66 0.46 -1.95 16 12 N -0.94 -60.09 13.65 21.45 0.29 -59.80 16 13 Si 1.12 49.17 29.90 68.60 2.05 51.22 16 14 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 15 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 16 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 17 N -0.33 -15.42 12.18 -49.54 -0.60 -16.02 16 18 N -0.33 -14.24 12.23 -58.00 -0.71 -14.95 16 19 C 0.31 10.80 7.00 260.11 1.82 12.62 16 20 N -0.28 -7.46 5.07 -369.22 -1.87 -9.33 16 21 C 0.02 0.49 10.05 127.69 1.28 1.77 16 22 O -0.26 -7.47 10.88 -50.17 -0.55 -8.02 16 23 C 0.03 0.56 11.51 113.37 1.30 1.86 16 24 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.05 1.22 7.97 -2.38 -0.02 1.20 16 27 H 0.13 1.94 8.12 -2.39 -0.02 1.92 16 28 H 0.12 2.04 7.46 -2.39 -0.02 2.03 16 29 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.08 2.81 6.95 -2.38 -0.02 2.79 16 31 H 0.07 2.04 8.14 -2.39 -0.02 2.03 16 32 H -0.03 -1.56 8.00 -2.39 -0.02 -1.58 16 33 H -0.02 -0.97 8.01 -2.39 -0.02 -0.99 16 34 H 0.25 16.59 7.22 -92.71 -0.67 15.92 16 35 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.03 0.71 7.97 -2.39 -0.02 0.69 16 40 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -79.34 338.34 6.30 -73.05 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 1.11 Total: 10.19 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: 8.02 Total: -10.23 kcal Atomic # 7 Polarization: -111.87 SS G_CDS: -4.34 Total: -116.21 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -0.55 Total: -8.02 kcal Atomic # 14 Polarization: 49.17 SS G_CDS: 2.05 Total: 51.22 kcal Total: -79.34 6.30 -73.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356544247.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.840 kcal (2) G-P(sol) polarization free energy of solvation -79.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds