Wall clock time and date at job start Mon Mar 30 2020 01:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46495 * 2 1 4 4 C 1.50693 * 109.47257 * 240.00161 * 2 1 3 5 5 H 1.07997 * 120.00072 * 239.99571 * 4 2 1 6 6 C 1.37886 * 120.00075 * 59.99963 * 4 2 1 7 7 N 1.31514 * 119.99860 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99857 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46867 * 90.00338 * 8 6 4 10 10 H 1.48503 * 109.46903 * 210.00005 * 8 6 4 11 11 H 1.48499 * 109.47206 * 330.00034 * 8 6 4 12 12 C 1.50697 * 109.46796 * 119.99832 * 2 1 3 13 13 O 1.20833 * 119.99747 * 120.00770 * 12 2 1 14 14 O 1.34230 * 120.00262 * 299.72392 * 12 2 1 15 15 C 1.45202 * 116.99836 * 180.27336 * 14 12 2 16 16 H 1.09000 * 109.47281 * 330.00745 * 15 14 12 17 17 C 1.53000 * 109.46662 * 90.00373 * 15 14 12 18 18 C 1.52999 * 109.47229 * 179.97438 * 17 15 14 19 19 H 1.08999 * 109.47222 * 60.00212 * 18 17 15 20 20 C 1.53003 * 109.47529 * 180.02562 * 18 17 15 21 21 C 1.53005 * 109.46999 * 300.00519 * 18 17 15 22 22 C 1.52998 * 109.47374 * 60.00021 * 21 18 17 23 23 C 1.52997 * 109.47428 * 59.99612 * 22 21 18 24 24 C 1.53000 * 109.47060 * 180.02562 * 22 21 18 25 25 C 1.53000 * 109.47074 * 210.00206 * 15 14 12 26 26 H 1.09003 * 109.46969 * 60.00096 * 1 2 3 27 27 H 1.09008 * 109.46845 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47452 * 300.00203 * 1 2 3 29 29 H 0.96996 * 119.99508 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.47630 * 300.00223 * 17 15 14 31 31 H 1.09000 * 109.46969 * 60.00181 * 17 15 14 32 32 H 1.09000 * 109.46992 * 60.00319 * 20 18 17 33 33 H 1.08999 * 109.47168 * 179.97438 * 20 18 17 34 34 H 1.08996 * 109.46866 * 300.00389 * 20 18 17 35 35 H 1.09005 * 109.46650 * 179.97438 * 21 18 17 36 36 H 1.08992 * 109.47135 * 299.99278 * 21 18 17 37 37 H 1.09005 * 109.46918 * 59.99839 * 23 22 21 38 38 H 1.08992 * 109.47096 * 180.02562 * 23 22 21 39 39 H 1.09006 * 109.47202 * 300.00640 * 23 22 21 40 40 H 1.08999 * 109.47131 * 59.99920 * 24 22 21 41 41 H 1.09004 * 109.46776 * 179.97438 * 24 22 21 42 42 H 1.08996 * 109.46733 * 299.99184 * 24 22 21 43 43 H 1.09000 * 109.47506 * 300.00401 * 25 15 14 44 44 H 1.09004 * 109.46776 * 60.00426 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6034 8 14 2.3226 -1.1194 -4.0080 9 1 1.3449 -2.1614 -4.4124 10 1 2.4874 -0.1400 -5.1120 11 1 3.6310 -1.7564 -3.7119 12 6 2.0323 -0.7104 1.2305 13 8 2.7270 -1.6927 1.1196 14 8 1.7126 -0.2486 2.4496 15 6 2.2364 -0.9795 3.5896 16 1 2.3497 -2.0311 3.3262 17 6 3.5979 -0.4028 3.9832 18 6 4.1497 -1.1725 5.1848 19 1 4.2629 -2.2242 4.9218 20 6 5.5109 -0.5954 5.5788 21 6 3.1811 -1.0426 6.3621 22 6 1.8198 -1.6194 5.9686 23 6 1.9787 -3.0956 5.5993 24 6 0.8511 -1.4890 7.1457 25 6 1.2681 -0.8501 4.7671 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 0.7096 1.1619 -3.4844 30 1 4.2878 -0.4949 3.1443 31 1 3.4846 0.6488 4.2466 32 1 5.3972 0.4562 5.8420 33 1 5.9038 -1.1435 6.4351 34 1 6.2010 -0.6876 4.7402 35 1 3.5741 -1.5914 7.2180 36 1 3.0680 0.0090 6.6252 37 1 2.3719 -3.6440 6.4554 38 1 1.0089 -3.5063 5.3185 39 1 2.6687 -3.1881 4.7605 40 1 0.7379 -0.4372 7.4082 41 1 -0.1189 -1.8995 6.8651 42 1 1.2440 -2.0371 8.0019 43 1 1.1548 0.2015 5.0306 44 1 0.2982 -1.2610 4.4867 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001438068137.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:42 Heat of formation + Delta-G solvation = -130.840567 kcal Electronic energy + Delta-G solvation = -21714.771812 eV Core-core repulsion = 18630.508892 eV Total energy + Delta-G solvation = -3084.262920 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.27408 -38.81915 -35.56107 -34.10220 -33.83713 -31.11225 -30.18084 -27.45567 -26.71573 -26.33382 -25.17799 -23.57351 -21.43857 -20.56456 -19.62559 -18.44672 -16.64135 -16.05706 -15.74946 -15.36109 -15.09510 -14.78067 -14.46612 -14.03520 -13.67912 -13.55657 -12.89424 -12.68204 -12.59654 -12.35456 -12.15422 -11.95003 -11.84840 -11.61572 -11.49795 -11.32953 -11.04140 -10.90576 -10.83463 -10.72358 -10.66232 -10.48048 -10.44455 -10.28395 -10.03759 -9.96740 -9.65163 -9.01950 -9.00352 -8.42342 -6.08162 -4.13262 3.31316 3.36853 3.38655 3.41421 3.56499 4.42656 4.51784 4.62169 4.75367 4.91996 5.06049 5.16911 5.24986 5.28622 5.38278 5.43356 5.53238 5.54115 5.58230 5.65383 5.72255 5.77893 5.81731 5.89210 5.90023 6.00640 6.02984 6.06258 6.21206 6.24105 6.33009 6.37713 6.40238 6.53768 6.69773 6.91208 6.92398 7.34185 7.48007 7.77203 7.97651 8.17871 8.91185 8.98931 9.52069 10.99300 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.029649 B = 0.004426 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.140868 B = 6325.412374 C = 6702.911887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.056 3.944 3 H 0.063 0.937 4 C -0.511 4.511 5 H 0.075 0.925 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.904 3.096 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.272 1.272 12 C 0.464 3.536 13 O -0.519 6.519 14 O -0.362 6.362 15 C 0.083 3.917 16 H 0.081 0.919 17 C -0.128 4.128 18 C -0.091 4.091 19 H 0.074 0.926 20 C -0.145 4.145 21 C -0.103 4.103 22 C -0.062 4.062 23 C -0.150 4.150 24 C -0.139 4.139 25 C -0.103 4.103 26 H 0.095 0.905 27 H 0.030 0.970 28 H 0.023 0.977 29 H 0.263 0.737 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.072 0.928 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.018 -2.384 18.448 18.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.037 3.963 3 H 0.080 0.920 4 C -0.549 4.549 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.197 1.197 12 C 0.309 3.691 13 O -0.406 6.406 14 O -0.280 6.280 15 C 0.028 3.972 16 H 0.099 0.901 17 C -0.166 4.166 18 C -0.109 4.109 19 H 0.093 0.907 20 C -0.203 4.203 21 C -0.141 4.141 22 C -0.062 4.062 23 C -0.207 4.207 24 C -0.196 4.196 25 C -0.141 4.141 26 H 0.114 0.886 27 H 0.049 0.951 28 H 0.042 0.958 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.090 0.910 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.159 -2.573 18.303 18.609 hybrid contribution 0.369 -0.496 -0.853 1.053 sum 2.528 -3.069 17.451 17.898 Atomic orbital electron populations 1.21723 0.95713 0.99959 1.01666 1.18740 0.94813 0.96924 0.85781 0.91958 1.21140 1.31770 1.13159 0.88824 0.90688 1.24939 0.94958 0.95014 0.99106 1.69883 1.36662 1.22799 1.23782 0.86392 0.79448 0.79225 0.81815 1.20544 1.21144 1.19696 1.25295 0.76471 0.83055 0.84270 1.90475 1.36496 1.26906 1.86701 1.86664 1.70117 1.55886 1.15362 1.22554 0.93053 0.97137 0.84503 0.90069 1.21973 0.96257 1.00262 0.98129 1.21125 0.94783 1.00318 0.94698 0.90742 1.21804 0.96448 1.00849 1.01150 1.21694 0.93940 1.01032 0.97419 1.20488 0.95339 0.95578 0.94760 1.22029 1.02155 0.94874 1.01620 1.21836 0.98877 1.01733 0.97159 1.21621 0.98406 1.01218 0.92838 0.88640 0.95075 0.95804 0.92744 0.91324 0.91243 0.92703 0.92799 0.92555 0.91907 0.91745 0.92698 0.92558 0.91841 0.92576 0.92525 0.92651 0.90970 0.91212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 8.90 37.16 0.33 -2.88 16 2 C 0.06 1.46 2.74 -92.93 -0.25 1.21 16 3 H 0.06 1.67 8.14 -51.93 -0.42 1.25 16 4 C -0.51 -14.55 8.37 -34.44 -0.29 -14.83 16 5 H 0.07 2.22 6.76 -52.49 -0.35 1.87 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.10 11.32 55.43 0.63 -24.47 16 8 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.46 11.16 7.22 36.00 0.26 11.42 16 13 O -0.52 -13.41 14.68 -18.76 -0.28 -13.69 16 14 O -0.36 -7.44 9.79 -39.26 -0.38 -7.82 16 15 C 0.08 1.37 2.18 -26.73 -0.06 1.31 16 16 H 0.08 1.46 5.44 -51.93 -0.28 1.17 16 17 C -0.13 -1.89 4.84 -26.73 -0.13 -2.02 16 18 C -0.09 -1.05 2.45 -90.62 -0.22 -1.27 16 19 H 0.07 0.90 6.43 -51.93 -0.33 0.56 16 20 C -0.15 -1.46 9.19 37.16 0.34 -1.12 16 21 C -0.10 -1.03 4.01 -26.73 -0.11 -1.14 16 22 C -0.06 -0.65 0.77 -154.53 -0.12 -0.77 16 23 C -0.15 -1.61 7.78 37.16 0.29 -1.32 16 24 C -0.14 -1.22 8.47 37.16 0.31 -0.91 16 25 C -0.10 -1.36 4.39 -26.75 -0.12 -1.48 16 26 H 0.10 2.47 6.07 -51.93 -0.32 2.16 16 27 H 0.03 0.73 8.14 -51.92 -0.42 0.31 16 28 H 0.02 0.50 8.12 -51.93 -0.42 0.08 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.77 4.81 -51.93 -0.25 0.52 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 339.48 15.07 5.12 5.12 Total: -1.00 -29.49 339.48 -7.65 -37.13 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -7.86 Total: -0.74 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: 0.15 Total: -12.19 kcal Atomic # 7 Polarization: -25.10 SS G_CDS: 0.63 Total: -24.47 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.66 Total: -21.51 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.49 -7.65 -37.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001438068137.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.708 kcal (2) G-P(sol) polarization free energy of solvation -29.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds