Wall clock time and date at job start Mon Mar 30 2020 01:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46495 * 2 1 4 4 C 1.50693 * 109.47257 * 240.00161 * 2 1 3 5 5 H 1.07997 * 120.00072 * 239.99571 * 4 2 1 6 6 C 1.37886 * 120.00075 * 59.99963 * 4 2 1 7 7 N 1.31514 * 119.99860 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99857 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46867 * 90.00338 * 8 6 4 10 10 H 1.48503 * 109.46903 * 210.00005 * 8 6 4 11 11 H 1.48499 * 109.47206 * 330.00034 * 8 6 4 12 12 C 1.50697 * 109.46796 * 119.99832 * 2 1 3 13 13 O 1.20833 * 119.99747 * 120.00770 * 12 2 1 14 14 O 1.34230 * 120.00262 * 299.72392 * 12 2 1 15 15 C 1.45202 * 116.99836 * 180.27336 * 14 12 2 16 16 H 1.09000 * 109.47281 * 330.00745 * 15 14 12 17 17 C 1.53000 * 109.46662 * 90.00373 * 15 14 12 18 18 C 1.52999 * 109.47229 * 179.97438 * 17 15 14 19 19 H 1.08999 * 109.47222 * 60.00212 * 18 17 15 20 20 C 1.53003 * 109.47529 * 180.02562 * 18 17 15 21 21 C 1.53005 * 109.46999 * 300.00519 * 18 17 15 22 22 C 1.52998 * 109.47374 * 60.00021 * 21 18 17 23 23 C 1.52997 * 109.47428 * 59.99612 * 22 21 18 24 24 C 1.53000 * 109.47060 * 180.02562 * 22 21 18 25 25 C 1.53000 * 109.47074 * 210.00206 * 15 14 12 26 26 H 1.09003 * 109.46969 * 60.00096 * 1 2 3 27 27 H 1.09008 * 109.46845 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47452 * 300.00203 * 1 2 3 29 29 H 0.96996 * 119.99508 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.47630 * 300.00223 * 17 15 14 31 31 H 1.09000 * 109.46969 * 60.00181 * 17 15 14 32 32 H 1.09000 * 109.46992 * 60.00319 * 20 18 17 33 33 H 1.08999 * 109.47168 * 179.97438 * 20 18 17 34 34 H 1.08996 * 109.46866 * 300.00389 * 20 18 17 35 35 H 1.09005 * 109.46650 * 179.97438 * 21 18 17 36 36 H 1.08992 * 109.47135 * 299.99278 * 21 18 17 37 37 H 1.09005 * 109.46918 * 59.99839 * 23 22 21 38 38 H 1.08992 * 109.47096 * 180.02562 * 23 22 21 39 39 H 1.09006 * 109.47202 * 300.00640 * 23 22 21 40 40 H 1.08999 * 109.47131 * 59.99920 * 24 22 21 41 41 H 1.09004 * 109.46776 * 179.97438 * 24 22 21 42 42 H 1.08996 * 109.46733 * 299.99184 * 24 22 21 43 43 H 1.09000 * 109.47506 * 300.00401 * 25 15 14 44 44 H 1.09004 * 109.46776 * 60.00426 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6034 8 14 2.3226 -1.1194 -4.0080 9 1 1.3449 -2.1614 -4.4124 10 1 2.4874 -0.1400 -5.1120 11 1 3.6310 -1.7564 -3.7119 12 6 2.0323 -0.7104 1.2305 13 8 2.7270 -1.6927 1.1196 14 8 1.7126 -0.2486 2.4496 15 6 2.2364 -0.9795 3.5896 16 1 2.3497 -2.0311 3.3262 17 6 3.5979 -0.4028 3.9832 18 6 4.1497 -1.1725 5.1848 19 1 4.2629 -2.2242 4.9218 20 6 5.5109 -0.5954 5.5788 21 6 3.1811 -1.0426 6.3621 22 6 1.8198 -1.6194 5.9686 23 6 1.9787 -3.0956 5.5993 24 6 0.8511 -1.4890 7.1457 25 6 1.2681 -0.8501 4.7671 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 0.7096 1.1619 -3.4844 30 1 4.2878 -0.4949 3.1443 31 1 3.4846 0.6488 4.2466 32 1 5.3972 0.4562 5.8420 33 1 5.9038 -1.1435 6.4351 34 1 6.2010 -0.6876 4.7402 35 1 3.5741 -1.5914 7.2180 36 1 3.0680 0.0090 6.6252 37 1 2.3719 -3.6440 6.4554 38 1 1.0089 -3.5063 5.3185 39 1 2.6687 -3.1881 4.7605 40 1 0.7379 -0.4372 7.4082 41 1 -0.1189 -1.8995 6.8651 42 1 1.2440 -2.0371 8.0019 43 1 1.1548 0.2015 5.0306 44 1 0.2982 -1.2610 4.4867 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001438068137.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:42 Heat of formation + Delta-G solvation = -144.824531 kcal Electronic energy + Delta-G solvation = -21715.378202 eV Core-core repulsion = 18630.508892 eV Total energy + Delta-G solvation = -3084.869310 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.73129 -40.21873 -37.29019 -35.93392 -35.01445 -32.86426 -31.73598 -28.26453 -27.51009 -27.34111 -27.30382 -25.39741 -22.92872 -21.51786 -21.38966 -19.44311 -18.59133 -17.99367 -17.51040 -16.92573 -16.41373 -16.07481 -15.64156 -15.32359 -15.01686 -14.79961 -14.51598 -14.10778 -13.70265 -13.54132 -13.37457 -13.03516 -12.95484 -12.89465 -12.77638 -12.76170 -12.61714 -12.55938 -12.44033 -12.29533 -12.07548 -11.91922 -11.76726 -11.58147 -11.46187 -11.14221 -11.07226 -10.93472 -10.81655 -10.54147 -8.21572 -6.34997 1.40578 1.40888 1.45583 1.52724 1.91823 2.42765 3.08189 3.55857 3.62544 3.76150 3.96737 3.99390 4.06039 4.23350 4.30370 4.37591 4.48791 4.62750 4.66018 4.67356 4.74334 4.82450 4.84878 4.88102 4.91659 4.94476 4.99006 5.03679 5.05143 5.11880 5.15363 5.20196 5.25249 5.36271 5.40153 5.42688 5.48395 5.54971 5.59438 5.70086 5.86905 6.08851 6.71288 7.07207 7.33809 8.85052 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.029649 B = 0.004426 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.140868 B = 6325.412374 C = 6702.911887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.049 3.951 3 H 0.048 0.952 4 C -0.539 4.539 5 H 0.054 0.946 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.964 3.036 9 H -0.271 1.271 10 H -0.272 1.272 11 H -0.277 1.277 12 C 0.472 3.528 13 O -0.544 6.544 14 O -0.361 6.361 15 C 0.075 3.925 16 H 0.064 0.936 17 C -0.125 4.125 18 C -0.087 4.087 19 H 0.066 0.934 20 C -0.143 4.143 21 C -0.099 4.099 22 C -0.057 4.057 23 C -0.150 4.150 24 C -0.135 4.135 25 C -0.098 4.098 26 H 0.078 0.922 27 H 0.027 0.973 28 H 0.048 0.952 29 H 0.269 0.731 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.052 0.948 39 H 0.042 0.958 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.941 -2.452 20.333 20.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.030 3.970 3 H 0.066 0.934 4 C -0.577 4.577 5 H 0.073 0.927 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.789 3.211 9 H -0.197 1.197 10 H -0.197 1.197 11 H -0.202 1.202 12 C 0.317 3.683 13 O -0.434 6.434 14 O -0.279 6.279 15 C 0.020 3.980 16 H 0.082 0.918 17 C -0.163 4.163 18 C -0.105 4.105 19 H 0.085 0.915 20 C -0.200 4.200 21 C -0.136 4.136 22 C -0.058 4.058 23 C -0.207 4.207 24 C -0.192 4.192 25 C -0.136 4.136 26 H 0.097 0.903 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.098 0.902 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.067 -2.623 20.211 20.485 hybrid contribution 0.393 -0.455 -1.390 1.515 sum 2.459 -3.079 18.821 19.229 Atomic orbital electron populations 1.21549 0.94373 0.99806 1.01974 1.18673 0.95944 0.96013 0.86374 0.93403 1.21238 1.32658 1.13252 0.90551 0.92737 1.25651 0.94875 0.95641 1.01561 1.69960 1.36671 1.23319 1.24769 0.85465 0.78688 0.78479 0.78493 1.19666 1.19732 1.20155 1.24818 0.75935 0.82408 0.85116 1.90453 1.37595 1.27997 1.87351 1.86602 1.69937 1.56102 1.15251 1.22992 0.95192 0.95834 0.83955 0.91832 1.21972 0.94543 1.01163 0.98633 1.21116 0.96125 0.99320 0.93967 0.91543 1.21787 0.95158 1.01542 1.01489 1.21693 0.92850 1.01969 0.97080 1.20505 0.96267 0.94809 0.94172 1.22035 1.01553 0.95477 1.01675 1.21802 0.98241 1.02562 0.96571 1.21681 0.97305 1.02273 0.92331 0.90316 0.95342 0.93339 0.92213 0.94393 0.90557 0.91966 0.90707 0.93708 0.89576 0.90839 0.90639 0.92921 0.93950 0.91847 0.92616 0.90945 0.90190 0.91686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.82 8.90 71.98 0.64 -5.18 16 2 C 0.05 2.62 2.74 -12.29 -0.03 2.58 16 3 H 0.05 2.67 8.14 -2.39 -0.02 2.65 16 4 C -0.54 -31.55 8.37 25.60 0.21 -31.34 16 5 H 0.05 3.35 6.76 -2.91 -0.02 3.33 16 6 C 0.02 1.27 5.30 84.66 0.45 1.72 16 7 N -0.91 -51.31 11.32 21.45 0.24 -51.06 16 8 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 9 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 10 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 C 0.47 23.44 7.22 71.23 0.51 23.96 16 13 O -0.54 -29.38 14.68 21.94 0.32 -29.05 16 14 O -0.36 -15.13 9.79 -51.41 -0.50 -15.64 16 15 C 0.07 2.50 2.18 30.59 0.07 2.56 16 16 H 0.06 2.37 5.44 -2.39 -0.01 2.36 16 17 C -0.13 -3.72 4.84 30.59 0.15 -3.57 16 18 C -0.09 -1.90 2.45 -10.79 -0.03 -1.93 16 19 H 0.07 1.57 6.43 -2.39 -0.02 1.56 16 20 C -0.14 -2.62 9.19 71.98 0.66 -1.96 16 21 C -0.10 -1.67 4.01 30.60 0.12 -1.55 16 22 C -0.06 -1.08 0.77 -52.20 -0.04 -1.12 16 23 C -0.15 -3.01 7.78 71.98 0.56 -2.45 16 24 C -0.13 -1.92 8.47 71.98 0.61 -1.31 16 25 C -0.10 -2.48 4.39 30.58 0.13 -2.34 16 26 H 0.08 4.12 6.07 -2.39 -0.01 4.10 16 27 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.05 2.06 8.12 -2.39 -0.02 2.04 16 29 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 30 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 38 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.04 1.02 4.81 -2.38 -0.01 1.01 16 40 H 0.06 0.83 8.14 -2.39 -0.02 0.82 16 41 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 43 H 0.08 1.89 8.14 -2.39 -0.02 1.88 16 44 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -64.30 339.48 7.06 -57.24 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.95 Total: 13.79 kcal Atomic # 6 Polarization: -25.95 SS G_CDS: 4.02 Total: -21.92 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: 0.24 Total: -51.06 kcal Atomic # 8 Polarization: -44.51 SS G_CDS: -0.18 Total: -44.69 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -64.30 7.06 -57.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001438068137.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.583 kcal (2) G-P(sol) polarization free energy of solvation -64.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds