Wall clock time and date at job start Mon Mar 30 2020 01:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 5 5 H 1.08003 * 120.00271 * 120.00264 * 4 2 1 6 6 C 1.37879 * 120.00161 * 299.99763 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00386 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00673 * 8 6 4 12 12 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 13 13 O 1.20822 * 120.00115 * 240.00066 * 12 2 1 14 14 O 1.34234 * 119.99749 * 59.99914 * 12 2 1 15 15 C 1.45203 * 117.00028 * 179.97438 * 14 12 2 16 16 H 1.09005 * 109.47125 * 330.00445 * 15 14 12 17 17 C 1.53001 * 109.46772 * 89.99840 * 15 14 12 18 18 C 1.53002 * 109.46840 * 180.02562 * 17 15 14 19 19 H 1.08998 * 109.47519 * 60.00456 * 18 17 15 20 20 C 1.53005 * 109.46958 * 180.02562 * 18 17 15 21 21 C 1.53002 * 109.47123 * 300.00218 * 18 17 15 22 22 C 1.52996 * 109.46967 * 60.00325 * 21 18 17 23 23 C 1.53002 * 109.46967 * 180.02562 * 22 21 18 24 24 C 1.52994 * 109.47428 * 59.99985 * 22 21 18 25 25 C 1.52995 * 109.47131 * 210.00341 * 15 14 12 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 30 30 H 1.08996 * 109.47254 * 300.00109 * 17 15 14 31 31 H 1.09005 * 109.46802 * 60.00407 * 17 15 14 32 32 H 1.08996 * 109.47002 * 180.02562 * 20 18 17 33 33 H 1.08996 * 109.46920 * 299.99908 * 20 18 17 34 34 H 1.09005 * 109.47018 * 60.00134 * 20 18 17 35 35 H 1.09004 * 109.47043 * 299.99766 * 21 18 17 36 36 H 1.09000 * 109.47232 * 180.02562 * 21 18 17 37 37 H 1.09000 * 109.47194 * 179.97438 * 23 22 21 38 38 H 1.09000 * 109.47232 * 299.99985 * 23 22 21 39 39 H 1.09005 * 109.47380 * 59.99864 * 23 22 21 40 40 H 1.08996 * 109.47138 * 299.99779 * 24 22 21 41 41 H 1.08996 * 109.47378 * 59.99834 * 24 22 21 42 42 H 1.09000 * 109.47210 * 179.97438 * 24 22 21 43 43 H 1.09004 * 109.46864 * 299.99635 * 25 15 14 44 44 H 1.08991 * 109.47261 * 60.00277 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.1463 -2.2869 3.6039 10 1 3.1465 -0.1871 4.8166 11 1 1.1660 -1.5866 4.8161 12 6 2.0324 -0.7104 -1.2304 13 8 2.7270 -1.6928 -1.1195 14 8 1.7081 -0.2518 -2.4496 15 6 2.2278 -0.9857 -3.5896 16 1 3.1808 -1.4430 -3.3236 17 6 1.2329 -2.0768 -3.9902 18 6 1.7807 -2.8505 -5.1912 19 1 2.7336 -3.3078 -4.9248 20 6 0.7855 -3.9413 -5.5922 21 6 1.9860 -1.8913 -6.3653 22 6 2.9809 -0.8003 -5.9646 23 6 3.1856 0.1593 -7.1386 24 6 4.3184 -1.4421 -5.5907 25 6 2.4326 -0.0261 -4.7635 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 0.7082 1.1610 3.4844 30 1 1.0870 -2.7604 -3.1539 31 1 0.2798 -1.6195 -4.2563 32 1 1.1760 -4.4927 -6.4474 33 1 0.6390 -4.6247 -4.7558 34 1 -0.1672 -3.4836 -5.8588 35 1 1.0330 -1.4340 -6.6318 36 1 2.3759 -2.4425 -7.2210 37 1 3.8941 0.9369 -6.8530 38 1 3.5757 -0.3915 -7.9944 39 1 2.2326 0.6166 -7.4046 40 1 4.1722 -2.1254 -4.7542 41 1 4.7087 -1.9933 -6.4462 42 1 5.0274 -0.6648 -5.3056 43 1 1.4795 0.4311 -5.0295 44 1 3.1414 0.7511 -4.4781 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001438068145.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:45 Heat of formation + Delta-G solvation = -130.827569 kcal Electronic energy + Delta-G solvation = -21729.161051 eV Core-core repulsion = 18644.898695 eV Total energy + Delta-G solvation = -3084.262356 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.27160 -38.81741 -35.56061 -34.09703 -33.84021 -31.11030 -30.18490 -27.45646 -26.71471 -26.33323 -25.17828 -23.56211 -21.45100 -20.57213 -19.59871 -18.45325 -16.67720 -16.05970 -15.77250 -15.30569 -15.00538 -14.83947 -14.46319 -14.04792 -13.76436 -13.48253 -12.90122 -12.68797 -12.60197 -12.35624 -12.12112 -11.94169 -11.86211 -11.66426 -11.49542 -11.30442 -11.04842 -10.89307 -10.79180 -10.73684 -10.67762 -10.50566 -10.43741 -10.27268 -10.03541 -9.97037 -9.64485 -9.01627 -8.99863 -8.42871 -6.08352 -4.13393 3.29764 3.36904 3.38788 3.42776 3.56875 4.42667 4.51810 4.62304 4.75303 4.92129 5.06095 5.16813 5.25019 5.28657 5.38321 5.43357 5.53216 5.54084 5.58233 5.65567 5.72286 5.77989 5.81780 5.89106 5.90149 6.00647 6.03114 6.06399 6.21212 6.24180 6.32961 6.38042 6.40321 6.53815 6.69697 6.91303 6.92544 7.34240 7.47916 7.77210 7.97660 8.17736 8.91425 8.99032 9.52052 10.99127 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.029934 B = 0.004362 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.173547 B = 6417.899197 C = 6590.931439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.056 3.944 3 H 0.063 0.937 4 C -0.510 4.510 5 H 0.076 0.924 6 C 0.061 3.939 7 N -0.892 5.892 8 Si 0.903 3.097 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.464 3.536 13 O -0.518 6.518 14 O -0.362 6.362 15 C 0.083 3.917 16 H 0.081 0.919 17 C -0.128 4.128 18 C -0.091 4.091 19 H 0.074 0.926 20 C -0.145 4.145 21 C -0.103 4.103 22 C -0.061 4.061 23 C -0.139 4.139 24 C -0.150 4.150 25 C -0.103 4.103 26 H 0.030 0.970 27 H 0.023 0.977 28 H 0.095 0.905 29 H 0.262 0.738 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.063 0.937 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.072 0.928 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.158 -3.010 -18.462 18.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.037 3.963 3 H 0.080 0.920 4 C -0.548 4.548 5 H 0.094 0.906 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.730 3.270 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.309 3.691 13 O -0.406 6.406 14 O -0.280 6.280 15 C 0.027 3.973 16 H 0.099 0.901 17 C -0.166 4.166 18 C -0.109 4.109 19 H 0.093 0.907 20 C -0.203 4.203 21 C -0.141 4.141 22 C -0.062 4.062 23 C -0.196 4.196 24 C -0.207 4.207 25 C -0.141 4.141 26 H 0.049 0.951 27 H 0.042 0.958 28 H 0.114 0.886 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.296 -3.207 -18.319 18.643 hybrid contribution 0.335 -0.502 0.858 1.049 sum 1.632 -3.709 -17.461 17.925 Atomic orbital electron populations 1.21716 0.95681 0.99952 1.01653 1.18747 0.94821 0.96936 0.85801 0.91976 1.21184 1.31684 1.13142 0.88811 0.90626 1.24938 0.94952 0.95030 0.99117 1.69891 1.36643 1.22909 1.23681 0.86346 0.78650 0.79735 0.82234 1.19528 1.20907 1.20903 1.25291 0.76358 0.83180 0.84266 1.90473 1.36539 1.26851 1.86697 1.86665 1.70280 1.55735 1.15359 1.22557 0.97918 0.92276 0.84504 0.90076 1.21967 0.99119 0.97389 0.98095 1.21127 0.99449 0.95636 0.94716 0.90747 1.21805 0.99059 0.98252 1.01136 1.21693 0.98959 0.96014 0.97420 1.20504 0.95573 0.95330 0.94754 1.21837 1.01717 0.98869 0.97186 1.22026 0.96111 1.00919 1.01617 1.21639 1.01976 0.97591 0.92882 0.95084 0.95811 0.88643 0.92799 0.91343 0.91243 0.92803 0.92567 0.92696 0.91751 0.91910 0.92526 0.92653 0.92578 0.91832 0.92699 0.92558 0.90953 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 8.90 37.16 0.33 -2.86 16 2 C 0.06 1.45 2.74 -92.93 -0.25 1.20 16 3 H 0.06 1.67 8.14 -51.93 -0.42 1.24 16 4 C -0.51 -14.52 8.37 -34.44 -0.29 -14.81 16 5 H 0.08 2.25 6.76 -52.48 -0.35 1.89 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.09 11.32 55.43 0.63 -24.47 16 8 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.46 11.16 7.22 36.00 0.26 11.42 16 13 O -0.52 -13.41 14.68 -18.75 -0.28 -13.68 16 14 O -0.36 -7.43 9.78 -39.27 -0.38 -7.82 16 15 C 0.08 1.36 2.18 -26.73 -0.06 1.31 16 16 H 0.08 1.45 5.44 -51.93 -0.28 1.17 16 17 C -0.13 -1.89 4.84 -26.73 -0.13 -2.02 16 18 C -0.09 -1.05 2.45 -90.61 -0.22 -1.27 16 19 H 0.07 0.90 6.43 -51.93 -0.33 0.57 16 20 C -0.15 -1.47 9.19 37.16 0.34 -1.13 16 21 C -0.10 -1.03 4.01 -26.73 -0.11 -1.14 16 22 C -0.06 -0.65 0.77 -154.48 -0.12 -0.77 16 23 C -0.14 -1.22 8.47 37.16 0.31 -0.91 16 24 C -0.15 -1.60 7.78 37.15 0.29 -1.31 16 25 C -0.10 -1.36 4.40 -26.70 -0.12 -1.47 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.02 0.50 8.11 -51.93 -0.42 0.08 16 28 H 0.10 2.47 6.07 -51.93 -0.32 2.16 16 29 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.77 4.81 -51.93 -0.25 0.52 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 339.47 15.07 5.12 5.12 Total: -1.00 -29.51 339.47 -7.65 -37.16 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -7.86 Total: -0.77 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: 0.15 Total: -12.18 kcal Atomic # 7 Polarization: -25.09 SS G_CDS: 0.63 Total: -24.47 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.66 Total: -21.50 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.51 -7.65 -37.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001438068145.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.667 kcal (2) G-P(sol) polarization free energy of solvation -29.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds