Wall clock time and date at job start Mon Mar 30 2020 01:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 5 5 H 1.08003 * 120.00271 * 120.00264 * 4 2 1 6 6 C 1.37879 * 120.00161 * 299.99763 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00386 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00673 * 8 6 4 12 12 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 13 13 O 1.20822 * 120.00115 * 240.00066 * 12 2 1 14 14 O 1.34234 * 119.99749 * 59.99914 * 12 2 1 15 15 C 1.45203 * 117.00028 * 179.97438 * 14 12 2 16 16 H 1.09005 * 109.47125 * 330.00445 * 15 14 12 17 17 C 1.53001 * 109.46772 * 89.99840 * 15 14 12 18 18 C 1.53002 * 109.46840 * 180.02562 * 17 15 14 19 19 H 1.08998 * 109.47519 * 60.00456 * 18 17 15 20 20 C 1.53005 * 109.46958 * 180.02562 * 18 17 15 21 21 C 1.53002 * 109.47123 * 300.00218 * 18 17 15 22 22 C 1.52996 * 109.46967 * 60.00325 * 21 18 17 23 23 C 1.53002 * 109.46967 * 180.02562 * 22 21 18 24 24 C 1.52994 * 109.47428 * 59.99985 * 22 21 18 25 25 C 1.52995 * 109.47131 * 210.00341 * 15 14 12 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 30 30 H 1.08996 * 109.47254 * 300.00109 * 17 15 14 31 31 H 1.09005 * 109.46802 * 60.00407 * 17 15 14 32 32 H 1.08996 * 109.47002 * 180.02562 * 20 18 17 33 33 H 1.08996 * 109.46920 * 299.99908 * 20 18 17 34 34 H 1.09005 * 109.47018 * 60.00134 * 20 18 17 35 35 H 1.09004 * 109.47043 * 299.99766 * 21 18 17 36 36 H 1.09000 * 109.47232 * 180.02562 * 21 18 17 37 37 H 1.09000 * 109.47194 * 179.97438 * 23 22 21 38 38 H 1.09000 * 109.47232 * 299.99985 * 23 22 21 39 39 H 1.09005 * 109.47380 * 59.99864 * 23 22 21 40 40 H 1.08996 * 109.47138 * 299.99779 * 24 22 21 41 41 H 1.08996 * 109.47378 * 59.99834 * 24 22 21 42 42 H 1.09000 * 109.47210 * 179.97438 * 24 22 21 43 43 H 1.09004 * 109.46864 * 299.99635 * 25 15 14 44 44 H 1.08991 * 109.47261 * 60.00277 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.1463 -2.2869 3.6039 10 1 3.1465 -0.1871 4.8166 11 1 1.1660 -1.5866 4.8161 12 6 2.0324 -0.7104 -1.2304 13 8 2.7270 -1.6928 -1.1195 14 8 1.7081 -0.2518 -2.4496 15 6 2.2278 -0.9857 -3.5896 16 1 3.1808 -1.4430 -3.3236 17 6 1.2329 -2.0768 -3.9902 18 6 1.7807 -2.8505 -5.1912 19 1 2.7336 -3.3078 -4.9248 20 6 0.7855 -3.9413 -5.5922 21 6 1.9860 -1.8913 -6.3653 22 6 2.9809 -0.8003 -5.9646 23 6 3.1856 0.1593 -7.1386 24 6 4.3184 -1.4421 -5.5907 25 6 2.4326 -0.0261 -4.7635 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 0.7082 1.1610 3.4844 30 1 1.0870 -2.7604 -3.1539 31 1 0.2798 -1.6195 -4.2563 32 1 1.1760 -4.4927 -6.4474 33 1 0.6390 -4.6247 -4.7558 34 1 -0.1672 -3.4836 -5.8588 35 1 1.0330 -1.4340 -6.6318 36 1 2.3759 -2.4425 -7.2210 37 1 3.8941 0.9369 -6.8530 38 1 3.5757 -0.3915 -7.9944 39 1 2.2326 0.6166 -7.4046 40 1 4.1722 -2.1254 -4.7542 41 1 4.7087 -1.9933 -6.4462 42 1 5.0274 -0.6648 -5.3056 43 1 1.4795 0.4311 -5.0295 44 1 3.1414 0.7511 -4.4781 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001438068145.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:44 Heat of formation + Delta-G solvation = -144.839444 kcal Electronic energy + Delta-G solvation = -21729.768651 eV Core-core repulsion = 18644.898695 eV Total energy + Delta-G solvation = -3084.869957 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.73064 -40.21538 -37.28974 -35.93571 -35.01037 -32.86364 -31.73933 -28.26622 -27.50858 -27.36577 -27.27859 -25.38991 -22.94381 -21.53235 -21.35160 -19.45208 -18.61854 -18.00357 -17.49951 -16.88321 -16.38739 -16.02997 -15.75047 -15.37469 -14.95364 -14.80112 -14.45277 -14.19451 -13.65931 -13.54377 -13.39524 -13.02155 -12.95818 -12.89391 -12.77570 -12.76232 -12.62373 -12.54458 -12.43800 -12.30508 -12.08591 -11.91951 -11.76691 -11.56893 -11.46639 -11.14560 -11.05758 -10.92732 -10.82711 -10.54273 -8.21774 -6.35133 1.39252 1.40820 1.45555 1.54043 1.91987 2.42729 3.07987 3.55948 3.62760 3.76130 3.96720 3.99612 4.06123 4.23365 4.30574 4.37705 4.48778 4.62770 4.65581 4.67650 4.74790 4.82402 4.84970 4.88175 4.91733 4.93803 4.98945 5.03694 5.05515 5.11971 5.15378 5.20393 5.25424 5.36189 5.40342 5.42605 5.48311 5.54758 5.59653 5.70167 5.86771 6.08698 6.71466 7.07274 7.33801 8.85034 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.029934 B = 0.004362 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.173547 B = 6417.899197 C = 6590.931439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.049 3.951 3 H 0.049 0.951 4 C -0.538 4.538 5 H 0.054 0.946 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.964 3.036 9 H -0.277 1.277 10 H -0.272 1.272 11 H -0.271 1.271 12 C 0.472 3.528 13 O -0.544 6.544 14 O -0.361 6.361 15 C 0.074 3.926 16 H 0.063 0.937 17 C -0.124 4.124 18 C -0.087 4.087 19 H 0.066 0.934 20 C -0.142 4.142 21 C -0.099 4.099 22 C -0.057 4.057 23 C -0.135 4.135 24 C -0.150 4.150 25 C -0.099 4.099 26 H 0.027 0.973 27 H 0.047 0.953 28 H 0.078 0.922 29 H 0.268 0.732 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.044 0.956 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.055 0.945 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.042 0.958 41 H 0.075 0.925 42 H 0.051 0.949 43 H 0.080 0.920 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.939 -3.141 -20.331 20.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.030 3.970 3 H 0.066 0.934 4 C -0.576 4.576 5 H 0.072 0.928 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.789 3.211 9 H -0.202 1.202 10 H -0.197 1.197 11 H -0.196 1.196 12 C 0.317 3.683 13 O -0.434 6.434 14 O -0.279 6.279 15 C 0.020 3.980 16 H 0.081 0.919 17 C -0.162 4.162 18 C -0.105 4.105 19 H 0.084 0.916 20 C -0.200 4.200 21 C -0.136 4.136 22 C -0.057 4.057 23 C -0.192 4.192 24 C -0.207 4.207 25 C -0.136 4.136 26 H 0.046 0.954 27 H 0.066 0.934 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.061 0.939 41 H 0.094 0.906 42 H 0.071 0.929 43 H 0.099 0.901 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.063 -3.318 -20.209 20.508 hybrid contribution 0.413 -0.436 1.392 1.516 sum 1.476 -3.754 -18.817 19.245 Atomic orbital electron populations 1.21538 0.94367 0.99762 1.01943 1.18680 0.95931 0.96052 0.86385 0.93361 1.21270 1.32589 1.13210 0.90549 0.92753 1.25648 0.94869 0.95654 1.01565 1.69965 1.36638 1.23418 1.24714 0.85414 0.78415 0.78508 0.78782 1.20229 1.19720 1.19645 1.24814 0.75832 0.82518 0.85114 1.90451 1.37681 1.27914 1.87347 1.86602 1.70003 1.56045 1.15248 1.22997 0.97474 0.93579 0.83941 0.91871 1.21962 0.99141 0.96511 0.98590 1.21119 0.99295 0.96137 0.93995 0.91569 1.21787 0.99049 0.97663 1.01468 1.21692 0.99337 0.95470 0.97087 1.20520 0.95356 0.95711 0.94155 1.21803 1.02269 0.98502 0.96607 1.22032 0.96402 1.00629 1.01676 1.21701 1.02493 0.97022 0.92399 0.95400 0.93381 0.90311 0.92216 0.94394 0.90523 0.90728 0.93714 0.91942 0.90826 0.89585 0.92638 0.90942 0.91838 0.93940 0.90637 0.92940 0.90149 0.91744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.78 8.90 71.98 0.64 -5.14 16 2 C 0.05 2.59 2.74 -12.29 -0.03 2.56 16 3 H 0.05 2.68 8.14 -2.39 -0.02 2.66 16 4 C -0.54 -31.52 8.37 25.60 0.21 -31.30 16 5 H 0.05 3.36 6.76 -2.91 -0.02 3.34 16 6 C 0.02 1.26 5.30 84.66 0.45 1.71 16 7 N -0.91 -51.27 11.32 21.45 0.24 -51.03 16 8 Si 0.96 44.63 29.54 68.60 2.03 46.65 16 9 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 12 C 0.47 23.45 7.22 71.23 0.51 23.96 16 13 O -0.54 -29.40 14.68 21.98 0.32 -29.08 16 14 O -0.36 -15.13 9.78 -51.45 -0.50 -15.64 16 15 C 0.07 2.49 2.18 30.59 0.07 2.56 16 16 H 0.06 2.36 5.44 -2.38 -0.01 2.35 16 17 C -0.12 -3.67 4.84 30.60 0.15 -3.53 16 18 C -0.09 -1.90 2.45 -10.79 -0.03 -1.93 16 19 H 0.07 1.57 6.43 -2.39 -0.02 1.55 16 20 C -0.14 -2.61 9.19 71.98 0.66 -1.95 16 21 C -0.10 -1.67 4.01 30.59 0.12 -1.55 16 22 C -0.06 -1.08 0.77 -52.17 -0.04 -1.12 16 23 C -0.13 -1.93 8.47 71.98 0.61 -1.32 16 24 C -0.15 -3.01 7.78 71.98 0.56 -2.45 16 25 C -0.10 -2.49 4.40 30.61 0.13 -2.35 16 26 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.05 2.05 8.11 -2.39 -0.02 2.03 16 28 H 0.08 4.12 6.07 -2.38 -0.01 4.11 16 29 H 0.27 14.17 8.31 -92.70 -0.77 13.40 16 30 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16 33 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.04 1.03 4.81 -2.39 -0.01 1.02 16 41 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -64.37 339.47 7.06 -57.31 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 0.95 Total: 13.63 kcal Atomic # 6 Polarization: -25.87 SS G_CDS: 4.02 Total: -21.85 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: 0.24 Total: -51.03 kcal Atomic # 8 Polarization: -44.53 SS G_CDS: -0.18 Total: -44.71 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -64.37 7.06 -57.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001438068145.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.529 kcal (2) G-P(sol) polarization free energy of solvation -64.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds