Wall clock time and date at job start Mon Mar 30 2020 01:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36937 * 119.99828 * 2 1 4 4 H 1.07996 * 120.00049 * 204.54408 * 3 2 1 5 5 C 1.38811 * 119.99819 * 24.55027 * 3 2 1 6 6 N 1.31620 * 120.00260 * 13.88358 * 5 3 2 7 7 Si 1.86799 * 119.99987 * 193.89059 * 5 3 2 8 8 H 1.48500 * 109.47536 * 89.99363 * 7 5 3 9 9 H 1.48504 * 109.47227 * 210.00069 * 7 5 3 10 10 H 1.48507 * 109.46772 * 329.99286 * 7 5 3 11 11 C 1.46500 * 120.00055 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.46628 * 269.99430 * 11 2 1 13 13 C 1.52997 * 109.47341 * 180.02562 * 12 11 2 14 14 N 1.46506 * 109.47245 * 179.97438 * 13 12 11 15 15 C 1.34776 * 119.99679 * 179.97438 * 14 13 12 16 16 O 1.21280 * 120.00231 * 0.02562 * 15 14 13 17 17 C 1.50702 * 119.99771 * 179.97438 * 15 14 13 18 18 H 1.08993 * 112.84755 * 274.15755 * 17 15 14 19 19 C 1.53783 * 113.61375 * 45.35921 * 17 15 14 20 20 C 1.53776 * 87.08112 * 139.98045 * 19 17 15 21 21 C 1.53774 * 87.08051 * 334.56430 * 20 19 17 22 22 C 1.53004 * 113.61759 * 270.88308 * 21 20 19 23 23 C 1.53005 * 113.61443 * 139.98266 * 21 20 19 24 24 H 1.09003 * 109.47013 * 269.97566 * 1 2 3 25 25 H 1.09000 * 109.47555 * 29.97395 * 1 2 3 26 26 H 1.09002 * 109.47443 * 149.97836 * 1 2 3 27 27 H 0.97000 * 120.00070 * 180.02562 * 6 5 3 28 28 H 1.09000 * 109.47586 * 150.00094 * 11 2 1 29 29 H 1.08994 * 109.47284 * 29.98911 * 11 2 1 30 30 H 1.09005 * 109.47390 * 59.99677 * 12 11 2 31 31 H 1.09004 * 109.47096 * 300.00199 * 12 11 2 32 32 H 1.09000 * 109.46930 * 60.00060 * 13 12 11 33 33 H 1.09004 * 109.47042 * 300.00053 * 13 12 11 34 34 H 0.96988 * 119.99803 * 0.02562 * 14 13 12 35 35 H 1.08999 * 113.61116 * 254.53275 * 19 17 15 36 36 H 1.09000 * 113.61689 * 25.34241 * 19 17 15 37 37 H 1.08996 * 113.61334 * 89.11949 * 20 19 17 38 38 H 1.09003 * 113.61310 * 219.93379 * 20 19 17 39 39 H 1.08998 * 109.47217 * 167.34164 * 22 21 20 40 40 H 1.09002 * 109.47027 * 287.34908 * 22 21 20 41 41 H 1.08998 * 109.46776 * 47.34611 * 22 21 20 42 42 H 1.08994 * 109.47224 * 322.50757 * 23 21 20 43 43 H 1.09009 * 109.47100 * 82.50199 * 23 21 20 44 44 H 1.08995 * 109.47338 * 202.49851 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1564 1.2282 -0.3885 5 6 1.5496 2.3337 0.4995 6 7 0.4486 2.2427 1.2150 7 14 2.3047 4.0074 0.1561 8 1 1.7380 4.5576 -1.1014 9 1 2.0001 4.9281 1.2808 10 1 3.7765 3.8671 0.0160 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7109 1.4418 13 6 3.2181 -3.0355 1.4414 14 7 3.4629 -3.4586 2.8225 15 6 4.1255 -4.6061 3.0684 16 8 4.5196 -5.2883 2.1463 17 6 4.3778 -5.0410 4.4890 18 1 5.2820 -4.6029 4.9115 19 6 3.1463 -4.9115 5.4008 20 6 3.5657 -6.2525 6.0257 21 6 4.2731 -6.5612 4.6957 22 6 3.3755 -7.2587 3.6715 23 6 5.6279 -7.2511 4.8678 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3634 0.8902 -0.5134 26 1 -0.3634 -0.8898 -0.5142 27 1 0.0292 3.0448 1.5637 28 1 3.1499 -1.1382 -0.5143 29 1 1.6084 -2.0282 -0.5145 30 1 1.5002 -1.8413 1.9557 31 1 3.0417 -0.9513 1.9559 32 1 4.1705 -2.9046 0.9277 33 1 2.6294 -3.7953 0.9272 34 1 3.1474 -2.9132 3.5599 35 1 3.2017 -4.0711 6.0926 36 1 2.1988 -4.9558 4.8638 37 1 4.2480 -6.1468 6.8690 38 1 2.7274 -6.9155 6.2401 39 1 3.8591 -7.2438 2.6948 40 1 3.2082 -8.2911 3.9784 41 1 2.4199 -6.7379 3.6117 42 1 6.1375 -6.8389 5.7386 43 1 5.4754 -8.3212 5.0089 44 1 6.2358 -7.0849 3.9785 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479789719.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:58 Heat of formation + Delta-G solvation = -14.414019 kcal Electronic energy + Delta-G solvation = -20757.094400 eV Core-core repulsion = 17710.172865 eV Total energy + Delta-G solvation = -3046.921535 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.79334 -38.12806 -36.15670 -34.67191 -32.05012 -30.90604 -29.88094 -27.55319 -27.19907 -25.87605 -24.85395 -22.77704 -21.94109 -20.75512 -20.08113 -18.47325 -16.95388 -16.73798 -15.84626 -15.63194 -15.04502 -14.76803 -14.36370 -14.22876 -13.79966 -13.46867 -13.36213 -13.03611 -12.79186 -12.61462 -12.37702 -12.02615 -11.81463 -11.65523 -11.40750 -11.28822 -11.05465 -10.97363 -10.85766 -10.73886 -10.56613 -10.46010 -10.28380 -10.07128 -9.92319 -9.76784 -9.40742 -8.81874 -8.53887 -6.74245 -5.74926 -3.20385 2.78369 3.35639 3.39310 3.44470 3.45466 4.19832 4.28917 4.49633 4.51330 4.52003 5.03134 5.06644 5.27949 5.31521 5.39240 5.44310 5.47526 5.55961 5.57347 5.59473 5.66808 5.76235 5.84853 5.87916 5.95495 5.98920 6.04189 6.16049 6.22908 6.28202 6.37430 6.46560 6.69342 6.77688 6.86012 7.03879 7.34417 7.68284 7.69935 7.80588 8.38660 8.41455 9.23270 9.86782 10.37092 11.31250 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.032845 B = 0.003254 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.290153 B = 8601.634782 C = 8723.839518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.601 5.601 3 C -0.256 4.256 4 H 0.068 0.932 5 C 0.002 3.998 6 N -0.906 5.906 7 Si 0.903 3.097 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.156 3.844 12 C -0.149 4.149 13 C 0.119 3.881 14 N -0.725 5.725 15 C 0.520 3.480 16 O -0.544 6.544 17 C -0.130 4.130 18 H 0.116 0.884 19 C -0.135 4.135 20 C -0.134 4.134 21 C -0.059 4.059 22 C -0.135 4.135 23 C -0.136 4.136 24 H 0.022 0.978 25 H 0.047 0.953 26 H -0.003 1.003 27 H 0.252 0.748 28 H 0.045 0.955 29 H 0.038 0.962 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.400 0.600 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.514 -16.483 9.461 19.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.323 5.323 3 C -0.386 4.386 4 H 0.085 0.915 5 C -0.196 4.196 6 N -0.551 5.551 7 Si 0.734 3.266 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.028 3.972 12 C -0.190 4.190 13 C -0.004 4.004 14 N -0.376 5.376 15 C 0.306 3.694 16 O -0.422 6.422 17 C -0.151 4.151 18 H 0.134 0.866 19 C -0.173 4.173 20 C -0.171 4.171 21 C -0.060 4.060 22 C -0.192 4.192 23 C -0.193 4.193 24 H 0.041 0.959 25 H 0.065 0.935 26 H 0.016 0.984 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.234 0.766 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.671 -16.811 8.828 19.817 hybrid contribution 0.169 1.407 0.419 1.478 sum 5.840 -15.405 9.247 18.892 Atomic orbital electron populations 1.20763 0.82729 0.96344 0.98441 1.43962 1.01835 1.00742 1.85807 1.19224 0.99401 0.85789 1.34141 0.91452 1.25047 0.98193 0.98621 0.97762 1.70064 1.21138 1.27443 1.36474 0.86271 0.78776 0.84196 0.77397 1.21472 1.21777 1.20459 1.20720 0.95923 0.88220 0.92336 1.22525 0.99570 0.94058 1.02824 1.21488 1.00131 0.96998 0.81833 1.46227 1.57924 1.23725 1.09725 1.20445 0.77486 0.80590 0.90842 1.90639 1.51430 1.53827 1.46306 1.22929 1.00794 0.98436 0.92929 0.86577 1.22913 0.97290 0.98642 0.98425 1.23027 1.00431 0.97093 0.96552 1.21637 0.96372 0.92431 0.95555 1.21731 0.98610 0.99181 0.99718 1.21729 0.95692 1.00120 1.01758 0.95926 0.93452 0.98446 0.93772 0.93666 0.94355 0.92246 0.91343 0.91955 0.92131 0.76591 0.90557 0.89510 0.89862 0.91058 0.90116 0.92733 0.92971 0.92707 0.92537 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.99 9.03 59.85 0.54 4.53 16 2 N -0.60 -15.12 2.92 -181.12 -0.53 -15.65 16 3 C -0.26 -7.02 9.63 -15.06 -0.15 -7.17 16 4 H 0.07 1.82 7.86 -52.49 -0.41 1.41 16 5 C 0.00 0.06 5.04 -17.43 -0.09 -0.03 16 6 N -0.91 -26.26 10.89 55.49 0.60 -25.66 16 7 Si 0.90 21.77 29.58 -169.99 -5.03 16.74 16 8 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 C 0.16 3.17 5.71 -4.04 -0.02 3.15 16 12 C -0.15 -2.66 5.65 -26.73 -0.15 -2.82 16 13 C 0.12 1.84 5.67 -4.04 -0.02 1.82 16 14 N -0.73 -9.80 5.45 -60.29 -0.33 -10.13 16 15 C 0.52 7.17 6.53 -10.98 -0.07 7.10 16 16 O -0.54 -9.30 14.61 5.56 0.08 -9.22 16 17 C -0.13 -1.34 3.70 -90.96 -0.34 -1.68 16 18 H 0.12 1.08 8.10 -51.93 -0.42 0.66 16 19 C -0.14 -1.16 6.73 -25.92 -0.17 -1.34 16 20 C -0.13 -1.05 7.22 -25.93 -0.19 -1.24 16 21 C -0.06 -0.57 1.19 -153.70 -0.18 -0.76 16 22 C -0.14 -1.46 7.92 37.16 0.29 -1.17 16 23 C -0.14 -1.20 9.20 37.16 0.34 -0.86 16 24 H 0.02 0.59 7.60 -51.93 -0.39 0.19 16 25 H 0.05 1.25 7.13 -51.93 -0.37 0.88 16 26 H 0.00 -0.06 7.89 -51.93 -0.41 -0.47 16 27 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.04 0.90 8.04 -51.93 -0.42 0.49 16 29 H 0.04 0.72 7.89 -51.93 -0.41 0.31 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.40 4.73 8.03 -40.82 -0.33 4.40 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.80 7.55 -51.93 -0.39 0.41 16 37 H 0.08 0.56 7.96 -51.93 -0.41 0.15 16 38 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 39 H 0.08 1.06 6.32 -51.93 -0.33 0.74 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.58 7.27 -51.93 -0.38 0.20 16 42 H 0.05 0.41 7.94 -51.93 -0.41 0.00 16 43 H 0.06 0.45 8.14 -51.92 -0.42 0.02 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 349.15 15.07 5.26 5.26 Total: -1.00 -30.94 349.15 -8.17 -39.10 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -8.02 Total: 0.00 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -0.21 Total: -0.45 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: -0.25 Total: -51.44 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.08 Total: -9.22 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.94 -8.17 -39.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479789719.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.690 kcal (2) G-P(sol) polarization free energy of solvation -30.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds