Wall clock time and date at job start Mon Mar 30 2020 01:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36945 * 119.99551 * 2 1 4 4 H 1.07999 * 119.99402 * 203.08727 * 3 2 1 5 5 C 1.38812 * 119.99858 * 23.09102 * 3 2 1 6 6 N 1.31616 * 120.00253 * 13.61062 * 5 3 2 7 7 Si 1.86802 * 119.99530 * 193.61233 * 5 3 2 8 8 H 1.48499 * 109.46986 * 60.00131 * 7 5 3 9 9 H 1.48505 * 109.47021 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47095 * 299.99885 * 7 5 3 11 11 C 1.46495 * 120.00533 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47193 * 270.00211 * 11 2 1 13 13 C 1.53005 * 109.47120 * 179.97438 * 12 11 2 14 14 N 1.46496 * 109.46918 * 180.02562 * 13 12 11 15 15 C 1.34778 * 120.00076 * 180.02562 * 14 13 12 16 16 O 1.21281 * 119.99789 * 359.97438 * 15 14 13 17 17 C 1.50701 * 120.00495 * 179.72172 * 15 14 13 18 18 H 1.09000 * 112.84856 * 313.43490 * 17 15 14 19 19 C 1.53775 * 113.61781 * 182.23718 * 17 15 14 20 20 C 1.53957 * 87.01892 * 220.05077 * 19 17 15 21 21 C 1.53778 * 87.11149 * 25.35990 * 20 19 17 22 22 C 1.52994 * 113.61462 * 220.08783 * 21 20 19 23 23 C 1.53007 * 113.60978 * 89.19112 * 21 20 19 24 24 H 1.08994 * 109.47147 * 275.16730 * 1 2 3 25 25 H 1.09000 * 109.47454 * 35.17183 * 1 2 3 26 26 H 1.09004 * 109.47098 * 155.17146 * 1 2 3 27 27 H 0.97003 * 120.00267 * 179.97438 * 6 5 3 28 28 H 1.08996 * 109.47431 * 149.99525 * 11 2 1 29 29 H 1.09005 * 109.46780 * 29.99556 * 11 2 1 30 30 H 1.09004 * 109.47500 * 59.99637 * 12 11 2 31 31 H 1.08998 * 109.47020 * 299.99626 * 12 11 2 32 32 H 1.08991 * 109.46998 * 59.99714 * 13 12 11 33 33 H 1.09005 * 109.46935 * 299.99395 * 13 12 11 34 34 H 0.96997 * 120.00472 * 359.97438 * 14 13 12 35 35 H 1.09004 * 113.61127 * 334.56682 * 19 17 15 36 36 H 1.08998 * 113.62030 * 105.46842 * 19 17 15 37 37 H 1.09004 * 113.52960 * 270.80720 * 20 19 17 38 38 H 1.09004 * 113.74041 * 139.94729 * 20 19 17 39 39 H 1.09002 * 109.47397 * 157.49756 * 22 21 20 40 40 H 1.08998 * 109.47650 * 277.50665 * 22 21 20 41 41 H 1.09002 * 109.46713 * 37.50621 * 22 21 20 42 42 H 1.08999 * 109.46940 * 320.30599 * 23 21 20 43 43 H 1.08996 * 109.46923 * 80.31004 * 23 21 20 44 44 H 1.09002 * 109.46730 * 200.30922 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1647 1.2235 -0.3668 5 6 1.5389 2.3400 0.4715 6 7 0.4195 2.2583 1.1590 7 14 2.3057 4.0087 0.1301 8 1 2.3929 4.2226 -1.3368 9 1 1.4661 5.0728 0.7370 10 1 3.6679 4.0574 0.7193 11 6 2.1976 -1.2686 -0.0006 12 6 2.4526 -1.7109 1.4417 13 6 3.2172 -3.0363 1.4411 14 7 3.4608 -3.4601 2.8221 15 6 4.1233 -4.6077 3.0679 16 8 4.5174 -5.2898 2.1458 17 6 4.3795 -5.0406 4.4885 18 1 4.7591 -4.2335 5.1150 19 6 5.1928 -6.3409 4.5991 20 6 4.2582 -6.7322 5.7583 21 6 3.2067 -5.8101 5.1189 22 6 2.4114 -4.9896 6.1362 23 6 2.3151 -6.5151 4.0947 24 1 -0.3633 0.0926 1.0234 25 1 -0.3634 0.8400 -0.5920 26 1 -0.3633 -0.9327 -0.4315 27 1 -0.0071 3.0646 1.4888 28 1 3.1499 -1.1380 -0.5144 29 1 1.6085 -2.0281 -0.5147 30 1 1.5002 -1.8416 1.9555 31 1 3.0416 -0.9515 1.9559 32 1 4.1695 -2.9060 0.9272 33 1 2.6277 -3.7955 0.9271 34 1 3.1459 -2.9144 3.5596 35 1 5.1016 -6.9885 3.7271 36 1 6.2273 -6.1843 4.9048 37 1 4.6058 -6.3885 6.7326 38 1 3.9746 -7.7847 5.7572 39 1 1.9966 -4.1080 5.6473 40 1 1.6008 -5.5969 6.5389 41 1 3.0702 -4.6790 6.9471 42 1 2.9168 -7.2050 3.5030 43 1 1.5328 -7.0686 4.6141 44 1 1.8605 -5.7738 3.4375 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479789720.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:01 Heat of formation + Delta-G solvation = -15.354669 kcal Electronic energy + Delta-G solvation = -20831.954742 eV Core-core repulsion = 17784.992417 eV Total energy + Delta-G solvation = -3046.962325 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.78606 -38.14433 -36.15802 -34.65423 -31.95462 -30.89398 -30.06164 -27.65066 -27.22407 -25.87523 -24.85290 -22.69006 -21.88141 -20.77754 -20.09454 -18.41299 -17.08791 -16.74061 -15.81613 -15.65262 -15.05041 -14.77502 -14.51598 -14.20831 -13.64124 -13.49069 -13.33639 -13.00780 -12.87460 -12.61313 -12.42188 -12.19091 -11.68288 -11.64365 -11.50775 -11.25753 -11.04682 -11.00771 -10.81705 -10.71600 -10.58175 -10.48659 -10.29143 -10.09624 -9.91774 -9.76465 -9.50723 -8.84552 -8.54709 -6.75232 -5.72488 -3.18662 2.73366 3.36881 3.40036 3.44067 3.45780 4.19973 4.32356 4.48364 4.50885 4.56029 4.96203 5.09130 5.27795 5.31688 5.38018 5.40814 5.45383 5.50084 5.56166 5.57323 5.66866 5.77485 5.80773 5.86001 5.89659 5.98270 6.00391 6.15373 6.16581 6.28485 6.29404 6.45927 6.68396 6.76458 6.85271 7.03119 7.35982 7.68956 7.72637 7.80637 8.37833 8.41067 9.24122 9.87873 10.37185 11.32323 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029105 B = 0.003396 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.787942 B = 8242.617336 C = 8312.309718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.602 5.602 3 C -0.256 4.256 4 H 0.068 0.932 5 C 0.002 3.998 6 N -0.908 5.908 7 Si 0.904 3.096 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.156 3.844 12 C -0.149 4.149 13 C 0.119 3.881 14 N -0.725 5.725 15 C 0.522 3.478 16 O -0.547 6.547 17 C -0.134 4.134 18 H 0.110 0.890 19 C -0.117 4.117 20 C -0.133 4.133 21 C -0.068 4.068 22 C -0.140 4.140 23 C -0.133 4.133 24 H 0.030 0.970 25 H 0.040 0.960 26 H -0.002 1.002 27 H 0.252 0.748 28 H 0.045 0.955 29 H 0.038 0.962 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.400 0.600 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.729 -16.138 10.015 19.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.324 5.324 3 C -0.386 4.386 4 H 0.085 0.915 5 C -0.196 4.196 6 N -0.553 5.553 7 Si 0.734 3.266 8 H -0.211 1.211 9 H -0.216 1.216 10 H -0.210 1.210 11 C 0.028 3.972 12 C -0.190 4.190 13 C -0.005 4.005 14 N -0.376 5.376 15 C 0.309 3.691 16 O -0.425 6.425 17 C -0.155 4.155 18 H 0.128 0.872 19 C -0.155 4.155 20 C -0.171 4.171 21 C -0.069 4.069 22 C -0.197 4.197 23 C -0.191 4.191 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.017 0.983 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.233 0.767 35 H 0.113 0.887 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.871 -16.457 9.373 19.555 hybrid contribution 0.185 1.440 0.378 1.500 sum 5.056 -15.017 9.751 18.605 Atomic orbital electron populations 1.20792 0.82638 0.95432 0.99410 1.43964 1.01880 1.00715 1.85866 1.19183 0.98494 0.85565 1.35339 0.91458 1.25018 0.97983 0.98505 0.98119 1.70054 1.19870 1.27277 1.38064 0.86349 0.78409 0.83855 0.78008 1.21063 1.21647 1.20955 1.20716 0.95936 0.88192 0.92333 1.22535 0.99570 0.94045 1.02835 1.21488 1.00149 0.96985 0.81845 1.46218 1.57879 1.23760 1.09705 1.20399 0.77280 0.80541 0.90927 1.90660 1.51536 1.54094 1.46225 1.22979 0.99622 0.98889 0.94059 0.87224 1.22786 0.97956 0.95573 0.99160 1.23061 0.96318 0.99724 0.97963 1.21737 0.93388 0.95844 0.95901 1.21798 0.99993 0.99840 0.98081 1.21653 0.98992 1.00494 0.97925 0.95189 0.94158 0.98322 0.93747 0.93669 0.94341 0.92247 0.91351 0.91938 0.92151 0.76653 0.88698 0.91153 0.89929 0.91046 0.92148 0.92195 0.92283 0.91850 0.92077 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.00 9.02 59.85 0.54 4.54 16 2 N -0.60 -15.16 2.92 -181.12 -0.53 -15.69 16 3 C -0.26 -7.05 9.65 -15.06 -0.15 -7.20 16 4 H 0.07 1.81 7.86 -52.49 -0.41 1.40 16 5 C 0.00 0.06 5.09 -17.43 -0.09 -0.03 16 6 N -0.91 -26.33 10.75 55.49 0.60 -25.73 16 7 Si 0.90 21.81 29.58 -169.99 -5.03 16.78 16 8 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 C 0.16 3.18 5.71 -4.05 -0.02 3.16 16 12 C -0.15 -2.66 5.65 -26.73 -0.15 -2.81 16 13 C 0.12 1.84 5.67 -4.04 -0.02 1.82 16 14 N -0.73 -9.84 5.56 -60.29 -0.33 -10.18 16 15 C 0.52 7.26 5.77 -10.98 -0.06 7.20 16 16 O -0.55 -9.53 15.89 5.56 0.09 -9.44 16 17 C -0.13 -1.40 3.66 -90.96 -0.33 -1.73 16 18 H 0.11 0.98 8.10 -51.93 -0.42 0.56 16 19 C -0.12 -1.14 7.08 -25.83 -0.18 -1.32 16 20 C -0.13 -1.06 7.21 -25.83 -0.19 -1.24 16 21 C -0.07 -0.62 1.31 -153.70 -0.20 -0.82 16 22 C -0.14 -1.12 9.19 37.15 0.34 -0.77 16 23 C -0.13 -1.35 8.19 37.16 0.30 -1.05 16 24 H 0.03 0.79 7.33 -51.93 -0.38 0.41 16 25 H 0.04 1.06 7.37 -51.93 -0.38 0.68 16 26 H 0.00 -0.04 7.83 -51.93 -0.41 -0.45 16 27 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.04 0.90 8.03 -51.93 -0.42 0.49 16 29 H 0.04 0.72 7.86 -51.93 -0.41 0.31 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.40 4.73 8.47 -40.82 -0.35 4.38 16 35 H 0.09 1.08 6.91 -51.93 -0.36 0.72 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.56 7.96 -51.93 -0.41 0.14 16 38 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.41 7.94 -51.93 -0.41 0.00 16 42 H 0.06 0.70 7.34 -51.93 -0.38 0.31 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.70 7.53 -51.93 -0.39 0.31 16 LS Contribution 351.30 15.07 5.29 5.29 Total: -1.00 -31.14 351.30 -8.19 -39.33 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -8.07 Total: -0.11 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -0.21 Total: -0.26 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: -0.27 Total: -51.60 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.09 Total: -9.44 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.14 -8.19 -39.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479789720.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.977 kcal (2) G-P(sol) polarization free energy of solvation -31.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds