Wall clock time and date at job start Mon Mar 30 2020 01:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36945 * 119.99551 * 2 1 4 4 H 1.07999 * 119.99402 * 203.08727 * 3 2 1 5 5 C 1.38812 * 119.99858 * 23.09102 * 3 2 1 6 6 N 1.31616 * 120.00253 * 13.61062 * 5 3 2 7 7 Si 1.86802 * 119.99530 * 193.61233 * 5 3 2 8 8 H 1.48499 * 109.46986 * 60.00131 * 7 5 3 9 9 H 1.48505 * 109.47021 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47095 * 299.99885 * 7 5 3 11 11 C 1.46495 * 120.00533 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47193 * 270.00211 * 11 2 1 13 13 C 1.53005 * 109.47120 * 179.97438 * 12 11 2 14 14 N 1.46496 * 109.46918 * 180.02562 * 13 12 11 15 15 C 1.34778 * 120.00076 * 180.02562 * 14 13 12 16 16 O 1.21281 * 119.99789 * 359.97438 * 15 14 13 17 17 C 1.50701 * 120.00495 * 179.72172 * 15 14 13 18 18 H 1.09000 * 112.84856 * 313.43490 * 17 15 14 19 19 C 1.53775 * 113.61781 * 182.23718 * 17 15 14 20 20 C 1.53957 * 87.01892 * 220.05077 * 19 17 15 21 21 C 1.53778 * 87.11149 * 25.35990 * 20 19 17 22 22 C 1.52994 * 113.61462 * 220.08783 * 21 20 19 23 23 C 1.53007 * 113.60978 * 89.19112 * 21 20 19 24 24 H 1.08994 * 109.47147 * 275.16730 * 1 2 3 25 25 H 1.09000 * 109.47454 * 35.17183 * 1 2 3 26 26 H 1.09004 * 109.47098 * 155.17146 * 1 2 3 27 27 H 0.97003 * 120.00267 * 179.97438 * 6 5 3 28 28 H 1.08996 * 109.47431 * 149.99525 * 11 2 1 29 29 H 1.09005 * 109.46780 * 29.99556 * 11 2 1 30 30 H 1.09004 * 109.47500 * 59.99637 * 12 11 2 31 31 H 1.08998 * 109.47020 * 299.99626 * 12 11 2 32 32 H 1.08991 * 109.46998 * 59.99714 * 13 12 11 33 33 H 1.09005 * 109.46935 * 299.99395 * 13 12 11 34 34 H 0.96997 * 120.00472 * 359.97438 * 14 13 12 35 35 H 1.09004 * 113.61127 * 334.56682 * 19 17 15 36 36 H 1.08998 * 113.62030 * 105.46842 * 19 17 15 37 37 H 1.09004 * 113.52960 * 270.80720 * 20 19 17 38 38 H 1.09004 * 113.74041 * 139.94729 * 20 19 17 39 39 H 1.09002 * 109.47397 * 157.49756 * 22 21 20 40 40 H 1.08998 * 109.47650 * 277.50665 * 22 21 20 41 41 H 1.09002 * 109.46713 * 37.50621 * 22 21 20 42 42 H 1.08999 * 109.46940 * 320.30599 * 23 21 20 43 43 H 1.08996 * 109.46923 * 80.31004 * 23 21 20 44 44 H 1.09002 * 109.46730 * 200.30922 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1647 1.2235 -0.3668 5 6 1.5389 2.3400 0.4715 6 7 0.4195 2.2583 1.1590 7 14 2.3057 4.0087 0.1301 8 1 2.3929 4.2226 -1.3368 9 1 1.4661 5.0728 0.7370 10 1 3.6679 4.0574 0.7193 11 6 2.1976 -1.2686 -0.0006 12 6 2.4526 -1.7109 1.4417 13 6 3.2172 -3.0363 1.4411 14 7 3.4608 -3.4601 2.8221 15 6 4.1233 -4.6077 3.0679 16 8 4.5174 -5.2898 2.1458 17 6 4.3795 -5.0406 4.4885 18 1 4.7591 -4.2335 5.1150 19 6 5.1928 -6.3409 4.5991 20 6 4.2582 -6.7322 5.7583 21 6 3.2067 -5.8101 5.1189 22 6 2.4114 -4.9896 6.1362 23 6 2.3151 -6.5151 4.0947 24 1 -0.3633 0.0926 1.0234 25 1 -0.3634 0.8400 -0.5920 26 1 -0.3633 -0.9327 -0.4315 27 1 -0.0071 3.0646 1.4888 28 1 3.1499 -1.1380 -0.5144 29 1 1.6085 -2.0281 -0.5147 30 1 1.5002 -1.8416 1.9555 31 1 3.0416 -0.9515 1.9559 32 1 4.1695 -2.9060 0.9272 33 1 2.6277 -3.7955 0.9271 34 1 3.1459 -2.9144 3.5596 35 1 5.1016 -6.9885 3.7271 36 1 6.2273 -6.1843 4.9048 37 1 4.6058 -6.3885 6.7326 38 1 3.9746 -7.7847 5.7572 39 1 1.9966 -4.1080 5.6473 40 1 1.6008 -5.5969 6.5389 41 1 3.0702 -4.6790 6.9471 42 1 2.9168 -7.2050 3.5030 43 1 1.5328 -7.0686 4.6141 44 1 1.8605 -5.7738 3.4375 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479789720.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:00 Heat of formation + Delta-G solvation = -33.968175 kcal Electronic energy + Delta-G solvation = -20832.761884 eV Core-core repulsion = 17784.992417 eV Total energy + Delta-G solvation = -3047.769467 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.70348 -39.18038 -37.88698 -36.12651 -33.74201 -31.77428 -31.61185 -28.38257 -28.35296 -27.87231 -26.31252 -23.70714 -23.23786 -22.17139 -21.47788 -19.26897 -18.76193 -18.08265 -17.15090 -16.79377 -16.56790 -16.02409 -15.68013 -15.50071 -15.11155 -14.82869 -14.56248 -14.35243 -14.11771 -13.84344 -13.32711 -13.17891 -12.99574 -12.95788 -12.80813 -12.70689 -12.46062 -12.35080 -12.32930 -12.21440 -12.05383 -11.86427 -11.76697 -11.48081 -11.34164 -11.00393 -10.66754 -10.57956 -10.05974 -8.79261 -7.82707 -5.31399 1.46964 1.49225 1.55726 1.64699 2.27648 2.52089 3.31046 3.46341 3.54615 3.65876 3.69280 3.84219 4.10272 4.14272 4.27056 4.35376 4.49052 4.56160 4.64447 4.66494 4.70385 4.79241 4.80709 4.87157 4.90273 4.94740 4.96938 5.05021 5.12685 5.19314 5.28905 5.29614 5.30640 5.41717 5.46264 5.49453 5.58117 5.64803 5.71350 6.33704 6.59380 7.15550 7.27803 7.87580 8.31394 9.20295 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029105 B = 0.003396 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.787942 B = 8242.617336 C = 8312.309718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.619 5.619 3 C -0.268 4.268 4 H 0.069 0.931 5 C -0.050 4.050 6 N -0.936 5.936 7 Si 0.967 3.033 8 H -0.280 1.280 9 H -0.294 1.294 10 H -0.275 1.275 11 C 0.151 3.849 12 C -0.127 4.127 13 C 0.133 3.867 14 N -0.721 5.721 15 C 0.521 3.479 16 O -0.586 6.586 17 C -0.135 4.135 18 H 0.131 0.869 19 C -0.122 4.122 20 C -0.119 4.119 21 C -0.066 4.066 22 C -0.138 4.138 23 C -0.133 4.133 24 H 0.007 0.993 25 H 0.013 0.987 26 H 0.031 0.969 27 H 0.248 0.752 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.409 0.591 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.077 0.923 39 H 0.052 0.948 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.049 0.951 43 H 0.076 0.924 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.486 -16.768 11.301 20.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.342 5.342 3 C -0.398 4.398 4 H 0.087 0.913 5 C -0.245 4.245 6 N -0.582 5.582 7 Si 0.795 3.205 8 H -0.206 1.206 9 H -0.220 1.220 10 H -0.201 1.201 11 C 0.024 3.976 12 C -0.168 4.168 13 C 0.008 3.992 14 N -0.372 5.372 15 C 0.309 3.691 16 O -0.467 6.467 17 C -0.156 4.156 18 H 0.148 0.852 19 C -0.160 4.160 20 C -0.156 4.156 21 C -0.067 4.067 22 C -0.195 4.195 23 C -0.190 4.190 24 H 0.025 0.975 25 H 0.032 0.968 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.245 0.755 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.122 0.878 38 H 0.096 0.904 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.068 0.932 43 H 0.095 0.905 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.644 -17.106 10.672 20.937 hybrid contribution -0.044 1.556 -0.074 1.558 sum 5.600 -15.550 10.598 19.634 Atomic orbital electron populations 1.20565 0.82765 0.95936 0.97778 1.44195 1.02178 1.01737 1.86112 1.19505 0.98689 0.86819 1.34758 0.91312 1.25754 0.98673 1.01738 0.98352 1.70212 1.21158 1.27667 1.39207 0.85356 0.77738 0.79642 0.77791 1.20646 1.21966 1.20090 1.20887 0.95932 0.86854 0.93923 1.22173 0.99241 0.94624 1.00721 1.21179 0.99385 0.95550 0.83075 1.46144 1.57826 1.24024 1.09196 1.21048 0.76159 0.79755 0.92151 1.90642 1.53086 1.55143 1.47797 1.23149 1.00894 0.99785 0.91814 0.85164 1.22785 0.99004 0.94871 0.99294 1.23035 0.94646 0.99941 0.97980 1.21748 0.93207 0.95962 0.95782 1.21800 1.00343 0.99405 0.97995 1.21638 0.99412 0.99946 0.98011 0.97466 0.96792 0.95019 0.94271 0.93404 0.92338 0.92754 0.93214 0.92517 0.92096 0.75499 0.90916 0.90083 0.87833 0.90385 0.92912 0.91476 0.90764 0.93232 0.90507 0.94068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.63 9.02 127.77 1.15 9.79 16 2 N -0.62 -31.05 2.92 -726.95 -2.12 -33.18 16 3 C -0.27 -14.71 9.65 84.03 0.81 -13.90 16 4 H 0.07 3.68 7.86 -2.91 -0.02 3.66 16 5 C -0.05 -2.78 5.09 84.86 0.43 -2.35 16 6 N -0.94 -54.98 10.75 21.65 0.23 -54.74 16 7 Si 0.97 44.88 29.58 68.60 2.03 46.91 16 8 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 9 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 11 C 0.15 5.99 5.71 86.38 0.49 6.48 16 12 C -0.13 -4.46 5.65 30.59 0.17 -4.29 16 13 C 0.13 4.01 5.67 86.38 0.49 4.50 16 14 N -0.72 -18.99 5.56 -463.06 -2.57 -21.56 16 15 C 0.52 14.13 5.77 87.66 0.51 14.64 16 16 O -0.59 -20.49 15.89 -3.03 -0.05 -20.54 16 17 C -0.14 -2.58 3.66 -11.02 -0.04 -2.62 16 18 H 0.13 1.96 8.10 -2.39 -0.02 1.94 16 19 C -0.12 -2.18 7.08 31.18 0.22 -1.96 16 20 C -0.12 -1.55 7.21 31.18 0.22 -1.33 16 21 C -0.07 -1.07 1.31 -51.66 -0.07 -1.14 16 22 C -0.14 -1.83 9.19 71.98 0.66 -1.17 16 23 C -0.13 -2.57 8.19 71.98 0.59 -1.98 16 24 H 0.01 0.38 7.33 -2.39 -0.02 0.36 16 25 H 0.01 0.72 7.37 -2.39 -0.02 0.71 16 26 H 0.03 1.32 7.83 -2.39 -0.02 1.30 16 27 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 28 H 0.05 1.87 8.03 -2.39 -0.02 1.85 16 29 H 0.06 2.09 7.86 -2.38 -0.02 2.07 16 30 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 31 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 34 H 0.41 9.23 8.47 -92.71 -0.79 8.44 16 35 H 0.07 1.65 6.91 -2.38 -0.02 1.63 16 36 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.10 0.97 7.96 -2.38 -0.02 0.96 16 38 H 0.08 0.95 8.10 -2.39 -0.02 0.93 16 39 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.07 0.77 7.94 -2.39 -0.02 0.75 16 42 H 0.05 1.08 7.34 -2.39 -0.02 1.06 16 43 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.04 0.94 7.53 -2.39 -0.02 0.92 16 Total: -1.00 -66.88 351.30 3.33 -63.55 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.17 Total: 14.90 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 5.65 Total: 4.67 kcal Atomic # 7 Polarization: -105.02 SS G_CDS: -4.46 Total: -109.48 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.05 Total: -20.54 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -66.88 3.33 -63.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479789720.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.577 kcal (2) G-P(sol) polarization free energy of solvation -66.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds