Wall clock time and date at job start Mon Mar 30 2020 01:37:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.36945 * 119.99551 * 2 1
4 4 H 1.07999 * 119.99402 * 203.08727 * 3 2 1
5 5 C 1.38812 * 119.99858 * 23.09102 * 3 2 1
6 6 N 1.31616 * 120.00253 * 13.61062 * 5 3 2
7 7 Si 1.86802 * 119.99530 * 193.61233 * 5 3 2
8 8 H 1.48499 * 109.46986 * 60.00131 * 7 5 3
9 9 H 1.48505 * 109.47021 * 180.02562 * 7 5 3
10 10 H 1.48496 * 109.47095 * 299.99885 * 7 5 3
11 11 C 1.46495 * 120.00533 * 180.02562 * 2 1 3
12 12 C 1.52997 * 109.47193 * 270.00211 * 11 2 1
13 13 C 1.53005 * 109.47120 * 179.97438 * 12 11 2
14 14 N 1.46496 * 109.46918 * 180.02562 * 13 12 11
15 15 C 1.34778 * 120.00076 * 180.02562 * 14 13 12
16 16 O 1.21281 * 119.99789 * 359.97438 * 15 14 13
17 17 C 1.50701 * 120.00495 * 179.72172 * 15 14 13
18 18 H 1.09000 * 112.84856 * 313.43490 * 17 15 14
19 19 C 1.53775 * 113.61781 * 182.23718 * 17 15 14
20 20 C 1.53957 * 87.01892 * 220.05077 * 19 17 15
21 21 C 1.53778 * 87.11149 * 25.35990 * 20 19 17
22 22 C 1.52994 * 113.61462 * 220.08783 * 21 20 19
23 23 C 1.53007 * 113.60978 * 89.19112 * 21 20 19
24 24 H 1.08994 * 109.47147 * 275.16730 * 1 2 3
25 25 H 1.09000 * 109.47454 * 35.17183 * 1 2 3
26 26 H 1.09004 * 109.47098 * 155.17146 * 1 2 3
27 27 H 0.97003 * 120.00267 * 179.97438 * 6 5 3
28 28 H 1.08996 * 109.47431 * 149.99525 * 11 2 1
29 29 H 1.09005 * 109.46780 * 29.99556 * 11 2 1
30 30 H 1.09004 * 109.47500 * 59.99637 * 12 11 2
31 31 H 1.08998 * 109.47020 * 299.99626 * 12 11 2
32 32 H 1.08991 * 109.46998 * 59.99714 * 13 12 11
33 33 H 1.09005 * 109.46935 * 299.99395 * 13 12 11
34 34 H 0.96997 * 120.00472 * 359.97438 * 14 13 12
35 35 H 1.09004 * 113.61127 * 334.56682 * 19 17 15
36 36 H 1.08998 * 113.62030 * 105.46842 * 19 17 15
37 37 H 1.09004 * 113.52960 * 270.80720 * 20 19 17
38 38 H 1.09004 * 113.74041 * 139.94729 * 20 19 17
39 39 H 1.09002 * 109.47397 * 157.49756 * 22 21 20
40 40 H 1.08998 * 109.47650 * 277.50665 * 22 21 20
41 41 H 1.09002 * 109.46713 * 37.50621 * 22 21 20
42 42 H 1.08999 * 109.46940 * 320.30599 * 23 21 20
43 43 H 1.08996 * 109.46923 * 80.31004 * 23 21 20
44 44 H 1.09002 * 109.46730 * 200.30922 * 23 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1496 1.1860 0.0000
4 1 3.1647 1.2235 -0.3668
5 6 1.5389 2.3400 0.4715
6 7 0.4195 2.2583 1.1590
7 14 2.3057 4.0087 0.1301
8 1 2.3929 4.2226 -1.3368
9 1 1.4661 5.0728 0.7370
10 1 3.6679 4.0574 0.7193
11 6 2.1976 -1.2686 -0.0006
12 6 2.4526 -1.7109 1.4417
13 6 3.2172 -3.0363 1.4411
14 7 3.4608 -3.4601 2.8221
15 6 4.1233 -4.6077 3.0679
16 8 4.5174 -5.2898 2.1458
17 6 4.3795 -5.0406 4.4885
18 1 4.7591 -4.2335 5.1150
19 6 5.1928 -6.3409 4.5991
20 6 4.2582 -6.7322 5.7583
21 6 3.2067 -5.8101 5.1189
22 6 2.4114 -4.9896 6.1362
23 6 2.3151 -6.5151 4.0947
24 1 -0.3633 0.0926 1.0234
25 1 -0.3634 0.8400 -0.5920
26 1 -0.3633 -0.9327 -0.4315
27 1 -0.0071 3.0646 1.4888
28 1 3.1499 -1.1380 -0.5144
29 1 1.6085 -2.0281 -0.5147
30 1 1.5002 -1.8416 1.9555
31 1 3.0416 -0.9515 1.9559
32 1 4.1695 -2.9060 0.9272
33 1 2.6277 -3.7955 0.9271
34 1 3.1459 -2.9144 3.5596
35 1 5.1016 -6.9885 3.7271
36 1 6.2273 -6.1843 4.9048
37 1 4.6058 -6.3885 6.7326
38 1 3.9746 -7.7847 5.7572
39 1 1.9966 -4.1080 5.6473
40 1 1.6008 -5.5969 6.5389
41 1 3.0702 -4.6790 6.9471
42 1 2.9168 -7.2050 3.5030
43 1 1.5328 -7.0686 4.6141
44 1 1.8605 -5.7738 3.4375
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001479789720.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:37:00
Heat of formation + Delta-G solvation = -33.968175 kcal
Electronic energy + Delta-G solvation = -20832.761884 eV
Core-core repulsion = 17784.992417 eV
Total energy + Delta-G solvation = -3047.769467 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.189 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-41.70348 -39.18038 -37.88698 -36.12651 -33.74201 -31.77428 -31.61185 -28.38257
-28.35296 -27.87231 -26.31252 -23.70714 -23.23786 -22.17139 -21.47788 -19.26897
-18.76193 -18.08265 -17.15090 -16.79377 -16.56790 -16.02409 -15.68013 -15.50071
-15.11155 -14.82869 -14.56248 -14.35243 -14.11771 -13.84344 -13.32711 -13.17891
-12.99574 -12.95788 -12.80813 -12.70689 -12.46062 -12.35080 -12.32930 -12.21440
-12.05383 -11.86427 -11.76697 -11.48081 -11.34164 -11.00393 -10.66754 -10.57956
-10.05974 -8.79261 -7.82707 -5.31399 1.46964 1.49225 1.55726 1.64699
2.27648 2.52089 3.31046 3.46341 3.54615 3.65876 3.69280 3.84219
4.10272 4.14272 4.27056 4.35376 4.49052 4.56160 4.64447 4.66494
4.70385 4.79241 4.80709 4.87157 4.90273 4.94740 4.96938 5.05021
5.12685 5.19314 5.28905 5.29614 5.30640 5.41717 5.46264 5.49453
5.58117 5.64803 5.71350 6.33704 6.59380 7.15550 7.27803 7.87580
8.31394 9.20295
Molecular weight = 268.19amu
Principal moments of inertia in cm(-1)
A = 0.029105 B = 0.003396 C = 0.003368
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 961.787942 B = 8242.617336 C = 8312.309718
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.175 3.825
2 N -0.619 5.619
3 C -0.268 4.268
4 H 0.069 0.931
5 C -0.050 4.050
6 N -0.936 5.936
7 Si 0.967 3.033
8 H -0.280 1.280
9 H -0.294 1.294
10 H -0.275 1.275
11 C 0.151 3.849
12 C -0.127 4.127
13 C 0.133 3.867
14 N -0.721 5.721
15 C 0.521 3.479
16 O -0.586 6.586
17 C -0.135 4.135
18 H 0.131 0.869
19 C -0.122 4.122
20 C -0.119 4.119
21 C -0.066 4.066
22 C -0.138 4.138
23 C -0.133 4.133
24 H 0.007 0.993
25 H 0.013 0.987
26 H 0.031 0.969
27 H 0.248 0.752
28 H 0.048 0.952
29 H 0.058 0.942
30 H 0.054 0.946
31 H 0.049 0.951
32 H 0.056 0.944
33 H 0.061 0.939
34 H 0.409 0.591
35 H 0.072 0.928
36 H 0.080 0.920
37 H 0.103 0.897
38 H 0.077 0.923
39 H 0.052 0.948
40 H 0.066 0.934
41 H 0.073 0.927
42 H 0.049 0.951
43 H 0.076 0.924
44 H 0.040 0.960
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.486 -16.768 11.301 20.952
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 N -0.342 5.342
3 C -0.398 4.398
4 H 0.087 0.913
5 C -0.245 4.245
6 N -0.582 5.582
7 Si 0.795 3.205
8 H -0.206 1.206
9 H -0.220 1.220
10 H -0.201 1.201
11 C 0.024 3.976
12 C -0.168 4.168
13 C 0.008 3.992
14 N -0.372 5.372
15 C 0.309 3.691
16 O -0.467 6.467
17 C -0.156 4.156
18 H 0.148 0.852
19 C -0.160 4.160
20 C -0.156 4.156
21 C -0.067 4.067
22 C -0.195 4.195
23 C -0.190 4.190
24 H 0.025 0.975
25 H 0.032 0.968
26 H 0.050 0.950
27 H 0.057 0.943
28 H 0.066 0.934
29 H 0.077 0.923
30 H 0.072 0.928
31 H 0.068 0.932
32 H 0.075 0.925
33 H 0.079 0.921
34 H 0.245 0.755
35 H 0.091 0.909
36 H 0.099 0.901
37 H 0.122 0.878
38 H 0.096 0.904
39 H 0.071 0.929
40 H 0.085 0.915
41 H 0.092 0.908
42 H 0.068 0.932
43 H 0.095 0.905
44 H 0.059 0.941
Dipole moment (debyes) X Y Z Total
from point charges 5.644 -17.106 10.672 20.937
hybrid contribution -0.044 1.556 -0.074 1.558
sum 5.600 -15.550 10.598 19.634
Atomic orbital electron populations
1.20565 0.82765 0.95936 0.97778 1.44195 1.02178 1.01737 1.86112
1.19505 0.98689 0.86819 1.34758 0.91312 1.25754 0.98673 1.01738
0.98352 1.70212 1.21158 1.27667 1.39207 0.85356 0.77738 0.79642
0.77791 1.20646 1.21966 1.20090 1.20887 0.95932 0.86854 0.93923
1.22173 0.99241 0.94624 1.00721 1.21179 0.99385 0.95550 0.83075
1.46144 1.57826 1.24024 1.09196 1.21048 0.76159 0.79755 0.92151
1.90642 1.53086 1.55143 1.47797 1.23149 1.00894 0.99785 0.91814
0.85164 1.22785 0.99004 0.94871 0.99294 1.23035 0.94646 0.99941
0.97980 1.21748 0.93207 0.95962 0.95782 1.21800 1.00343 0.99405
0.97995 1.21638 0.99412 0.99946 0.98011 0.97466 0.96792 0.95019
0.94271 0.93404 0.92338 0.92754 0.93214 0.92517 0.92096 0.75499
0.90916 0.90083 0.87833 0.90385 0.92912 0.91476 0.90764 0.93232
0.90507 0.94068
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.17 8.63 9.02 127.77 1.15 9.79 16
2 N -0.62 -31.05 2.92 -726.95 -2.12 -33.18 16
3 C -0.27 -14.71 9.65 84.03 0.81 -13.90 16
4 H 0.07 3.68 7.86 -2.91 -0.02 3.66 16
5 C -0.05 -2.78 5.09 84.86 0.43 -2.35 16
6 N -0.94 -54.98 10.75 21.65 0.23 -54.74 16
7 Si 0.97 44.88 29.58 68.60 2.03 46.91 16
8 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16
9 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16
10 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16
11 C 0.15 5.99 5.71 86.38 0.49 6.48 16
12 C -0.13 -4.46 5.65 30.59 0.17 -4.29 16
13 C 0.13 4.01 5.67 86.38 0.49 4.50 16
14 N -0.72 -18.99 5.56 -463.06 -2.57 -21.56 16
15 C 0.52 14.13 5.77 87.66 0.51 14.64 16
16 O -0.59 -20.49 15.89 -3.03 -0.05 -20.54 16
17 C -0.14 -2.58 3.66 -11.02 -0.04 -2.62 16
18 H 0.13 1.96 8.10 -2.39 -0.02 1.94 16
19 C -0.12 -2.18 7.08 31.18 0.22 -1.96 16
20 C -0.12 -1.55 7.21 31.18 0.22 -1.33 16
21 C -0.07 -1.07 1.31 -51.66 -0.07 -1.14 16
22 C -0.14 -1.83 9.19 71.98 0.66 -1.17 16
23 C -0.13 -2.57 8.19 71.98 0.59 -1.98 16
24 H 0.01 0.38 7.33 -2.39 -0.02 0.36 16
25 H 0.01 0.72 7.37 -2.39 -0.02 0.71 16
26 H 0.03 1.32 7.83 -2.39 -0.02 1.30 16
27 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16
28 H 0.05 1.87 8.03 -2.39 -0.02 1.85 16
29 H 0.06 2.09 7.86 -2.38 -0.02 2.07 16
30 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16
31 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16
32 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16
33 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16
34 H 0.41 9.23 8.47 -92.71 -0.79 8.44 16
35 H 0.07 1.65 6.91 -2.38 -0.02 1.63 16
36 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16
37 H 0.10 0.97 7.96 -2.38 -0.02 0.96 16
38 H 0.08 0.95 8.10 -2.39 -0.02 0.93 16
39 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16
40 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16
41 H 0.07 0.77 7.94 -2.39 -0.02 0.75 16
42 H 0.05 1.08 7.34 -2.39 -0.02 1.06 16
43 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16
44 H 0.04 0.94 7.53 -2.39 -0.02 0.92 16
Total: -1.00 -66.88 351.30 3.33 -63.55
By element:
Atomic # 1 Polarization: 14.73 SS G_CDS: 0.17 Total: 14.90 kcal
Atomic # 6 Polarization: -0.98 SS G_CDS: 5.65 Total: 4.67 kcal
Atomic # 7 Polarization: -105.02 SS G_CDS: -4.46 Total: -109.48 kcal
Atomic # 8 Polarization: -20.49 SS G_CDS: -0.05 Total: -20.54 kcal
Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal
Total: -66.88 3.33 -63.55 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001479789720.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.577 kcal
(2) G-P(sol) polarization free energy of solvation -66.875 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.298 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.330 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.546 kcal
(6) G-S(sol) free energy of system = (1) + (5) -33.968 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds