Wall clock time and date at job start Mon Mar 30 2020 01:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46498 * 120.00009 * 2 1 4 4 C 1.53001 * 109.46852 * 269.99653 * 3 2 1 5 5 C 1.53000 * 109.46976 * 180.02562 * 4 3 2 6 6 N 1.46498 * 109.46999 * 179.97438 * 5 4 3 7 7 C 1.36934 * 120.00140 * 179.97438 * 6 5 4 8 8 H 1.08002 * 119.99914 * 0.02562 * 7 6 5 9 9 C 1.38812 * 120.00189 * 180.02562 * 7 6 5 10 10 N 1.31618 * 119.99970 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00097 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47183 * 89.99669 * 11 9 7 13 13 H 1.48495 * 109.47418 * 209.99931 * 11 9 7 14 14 H 1.48499 * 109.46886 * 330.00147 * 11 9 7 15 15 C 1.34778 * 119.99874 * 179.97438 * 2 1 3 16 16 O 1.21284 * 120.00329 * 180.02562 * 15 2 1 17 17 C 1.50700 * 119.99986 * 0.02562 * 15 2 1 18 18 C 1.53781 * 113.61480 * 199.70337 * 17 15 2 19 19 C 1.53956 * 87.02224 * 89.22741 * 18 17 15 20 20 C 1.52994 * 113.53883 * 270.81193 * 19 18 17 21 21 C 1.52997 * 113.74325 * 139.94437 * 19 18 17 22 22 C 1.53781 * 113.61445 * 297.30977 * 17 15 2 23 23 H 1.09002 * 109.47075 * 270.00330 * 1 2 3 24 24 H 1.08996 * 109.46636 * 30.00774 * 1 2 3 25 25 H 1.08998 * 109.46967 * 150.00222 * 1 2 3 26 26 H 1.09000 * 109.47292 * 29.99492 * 3 2 1 27 27 H 1.09007 * 109.46981 * 150.00169 * 3 2 1 28 28 H 1.09000 * 109.47041 * 299.99993 * 4 3 2 29 29 H 1.08998 * 109.47257 * 59.99730 * 4 3 2 30 30 H 1.09000 * 109.47131 * 299.99817 * 5 4 3 31 31 H 1.09007 * 109.47017 * 60.00417 * 5 4 3 32 32 H 0.97006 * 120.00087 * 0.02562 * 6 5 4 33 33 H 0.97004 * 119.99914 * 179.97438 * 10 9 7 34 34 H 1.09002 * 112.85358 * 68.50687 * 17 15 2 35 35 H 1.09004 * 113.61989 * 203.74966 * 18 17 15 36 36 H 1.09001 * 113.61336 * 334.65033 * 18 17 15 37 37 H 1.09002 * 109.47605 * 163.93151 * 20 19 18 38 38 H 1.08999 * 109.47227 * 283.93359 * 20 19 18 39 39 H 1.09009 * 109.47217 * 43.93646 * 20 19 18 40 40 H 1.09010 * 109.47053 * 322.40317 * 21 19 18 41 41 H 1.08998 * 109.47365 * 82.40149 * 21 19 18 42 42 H 1.08999 * 109.47154 * 202.40343 * 21 19 18 43 43 H 1.08999 * 113.61756 * 25.34690 * 22 17 15 44 44 H 1.09002 * 113.61774 * 156.25160 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 6 3.2182 3.0350 -1.4426 6 7 3.4629 3.4575 -2.8238 7 6 4.1361 4.6233 -3.0741 8 1 4.4871 5.2312 -2.2532 9 6 4.3676 5.0239 -4.3828 10 7 3.9404 4.2829 -5.3832 11 14 5.2866 6.6140 -4.7243 12 1 6.7423 6.3347 -4.8148 13 1 4.8132 7.1939 -6.0067 14 1 5.0351 7.5774 -3.6226 15 6 2.1389 -1.1672 0.0005 16 8 3.3518 -1.1673 0.0010 17 6 1.3854 -2.4723 0.0005 18 6 2.2260 -3.6690 0.4762 19 6 1.7491 -3.3347 1.9013 20 6 2.6552 -2.3416 2.6317 21 6 1.4171 -4.5672 2.7448 22 6 0.5170 -2.6823 1.2522 23 1 -0.3633 0.0001 1.0277 24 1 -0.3632 0.8899 -0.5139 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6085 2.0284 0.5137 27 1 3.1500 1.1383 0.5138 28 1 3.0417 0.9506 -1.9563 29 1 1.5002 1.8405 -1.9564 30 1 2.6294 3.7949 -0.9287 31 1 4.1706 2.9042 -0.9289 32 1 3.1474 2.9117 -3.5611 33 1 4.1018 4.5631 -6.2978 34 1 0.8554 -2.6551 -0.9342 35 1 1.8650 -4.6297 0.1090 36 1 3.2979 -3.5349 0.3308 37 1 2.1278 -1.9351 3.4946 38 1 3.5588 -2.8517 2.9654 39 1 2.9247 -1.5303 1.9553 40 1 0.9432 -5.3210 2.1158 41 1 2.3342 -4.9739 3.1708 42 1 0.7371 -4.2850 3.5486 43 1 0.2113 -1.7528 1.7325 44 1 -0.3122 -3.3727 1.0977 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483463378.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:57 Heat of formation + Delta-G solvation = -12.400329 kcal Electronic energy + Delta-G solvation = -20931.411881 eV Core-core repulsion = 17884.577666 eV Total energy + Delta-G solvation = -3046.834215 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.17185 -38.27795 -36.06926 -34.79502 -32.34049 -31.12639 -29.68322 -27.60925 -26.99002 -25.97360 -25.66166 -23.71501 -22.22705 -20.86817 -19.36057 -18.34464 -17.08142 -16.89788 -16.28592 -15.87666 -14.94736 -14.55788 -14.41706 -14.37433 -14.23635 -13.53155 -13.22585 -13.14814 -12.97941 -12.88343 -12.69762 -12.41204 -12.10099 -11.90236 -11.86293 -11.68366 -11.34558 -10.98603 -10.89636 -10.81936 -10.69783 -10.36244 -10.30392 -10.20089 -10.04631 -9.71924 -9.62925 -8.82756 -8.62450 -6.87382 -5.71974 -3.00562 2.62705 2.96922 3.46938 3.51479 3.53407 4.18617 4.31398 4.32435 4.45571 4.63605 4.75413 4.99491 5.02794 5.17649 5.27458 5.33036 5.37324 5.40474 5.43130 5.48033 5.51181 5.60876 5.63934 5.66312 5.73162 5.76181 5.78404 5.94134 5.96080 6.02081 6.12597 6.17520 6.28733 6.34430 6.43114 6.59052 6.90525 6.93125 7.37347 7.73946 8.20268 8.47055 9.57761 10.16678 10.51322 11.51212 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.044721 B = 0.003088 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.948215 B = 9065.966573 C = 9129.862747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.613 5.613 3 C 0.118 3.882 4 C -0.139 4.139 5 C 0.157 3.843 6 N -0.734 5.734 7 C -0.238 4.238 8 H 0.071 0.929 9 C -0.016 4.016 10 N -0.935 5.935 11 Si 0.908 3.092 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.534 3.466 16 O -0.531 6.531 17 C -0.138 4.138 18 C -0.115 4.115 19 C -0.088 4.088 20 C -0.144 4.144 21 C -0.134 4.134 22 C -0.123 4.123 23 H 0.056 0.944 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.018 0.982 31 H 0.020 0.980 32 H 0.383 0.617 33 H 0.255 0.745 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.074 0.926 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.128 -17.184 16.371 26.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.346 5.346 3 C -0.004 4.004 4 C -0.177 4.177 5 C 0.028 3.972 6 N -0.378 5.378 7 C -0.369 4.369 8 H 0.088 0.912 9 C -0.212 4.212 10 N -0.584 5.584 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.208 1.208 15 C 0.322 3.678 16 O -0.408 6.408 17 C -0.160 4.160 18 C -0.153 4.153 19 C -0.088 4.088 20 C -0.201 4.201 21 C -0.191 4.191 22 C -0.161 4.161 23 H 0.074 0.926 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.102 0.898 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.036 0.964 31 H 0.038 0.962 32 H 0.217 0.783 33 H 0.065 0.935 34 H 0.121 0.879 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.093 0.907 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.403 -17.008 16.406 25.820 hybrid contribution 0.209 0.737 -0.657 1.010 sum -10.194 -16.271 15.748 24.833 Atomic orbital electron populations 1.21863 0.79696 1.03420 1.01537 1.47867 1.06982 1.06263 1.73518 1.21497 0.97448 0.83494 0.97973 1.22051 1.01023 0.98950 0.95721 1.20541 0.96024 0.91905 0.88689 1.42359 1.68288 1.26002 1.01122 1.19253 1.27721 0.98142 0.91811 0.91152 1.24757 1.01773 0.99105 0.95562 1.69669 1.51605 1.38956 0.98142 0.86165 0.79547 0.83093 0.77262 1.21703 1.21780 1.20759 1.20010 0.87726 0.84736 0.75299 1.90713 1.13779 1.87110 1.49156 1.22363 0.99167 0.93991 1.00441 1.23007 1.01369 0.96164 0.94747 1.21864 0.96042 0.96187 0.94744 1.21853 0.98573 0.99380 1.00307 1.21716 1.01310 0.96574 0.99530 1.23156 0.96616 1.01359 0.94925 0.92581 0.90741 0.91057 0.90549 0.89815 0.91611 0.92042 0.96428 0.96228 0.78332 0.93549 0.87937 0.89519 0.89749 0.92948 0.92403 0.90579 0.92607 0.92604 0.92672 0.90736 0.89208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.66 9.12 59.85 0.55 1.20 16 2 N -0.61 -7.48 2.87 -181.57 -0.52 -8.00 16 3 C 0.12 1.66 5.41 -4.04 -0.02 1.64 16 4 C -0.14 -2.42 5.65 -26.73 -0.15 -2.57 16 5 C 0.16 3.33 6.26 -4.04 -0.03 3.30 16 6 N -0.73 -19.72 5.60 -59.91 -0.34 -20.06 16 7 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 8 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 9 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 10 N -0.93 -29.25 13.06 55.49 0.72 -28.53 16 11 Si 0.91 23.03 29.55 -169.99 -5.02 18.01 16 12 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 13 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 15 C 0.53 7.19 5.25 -10.98 -0.06 7.14 16 16 O -0.53 -9.26 14.03 5.55 0.08 -9.18 16 17 C -0.14 -1.37 3.09 -90.96 -0.28 -1.65 16 18 C -0.12 -1.12 6.76 -25.83 -0.17 -1.29 16 19 C -0.09 -0.78 1.39 -153.61 -0.21 -0.99 16 20 C -0.14 -1.51 8.99 37.15 0.33 -1.17 16 21 C -0.13 -0.95 9.20 37.16 0.34 -0.61 16 22 C -0.12 -0.94 6.04 -25.92 -0.16 -1.10 16 23 H 0.06 0.38 7.12 -51.93 -0.37 0.01 16 24 H 0.07 0.61 8.07 -51.93 -0.42 0.20 16 25 H 0.07 0.50 6.51 -51.93 -0.34 0.16 16 26 H 0.08 0.91 8.07 -51.93 -0.42 0.49 16 27 H 0.08 1.29 7.42 -51.93 -0.39 0.90 16 28 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.38 10.82 7.67 -40.82 -0.31 10.50 16 33 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 34 H 0.10 0.89 7.89 -51.93 -0.41 0.48 16 35 H 0.09 0.68 7.98 -51.93 -0.41 0.26 16 36 H 0.08 1.02 7.31 -51.93 -0.38 0.64 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.99 4.17 -51.92 -0.22 0.77 16 40 H 0.05 0.34 7.96 -51.92 -0.41 -0.07 16 41 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.07 0.57 6.13 -51.93 -0.32 0.25 16 44 H 0.09 0.53 8.10 -51.93 -0.42 0.11 16 LS Contribution 344.76 15.07 5.20 5.20 Total: -1.00 -33.84 344.76 -7.73 -41.58 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -7.74 Total: 4.79 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -0.11 Total: -3.80 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: -0.13 Total: -56.59 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.08 Total: -9.18 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.84 -7.73 -41.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483463378.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.177 kcal (2) G-P(sol) polarization free energy of solvation -33.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds