Wall clock time and date at job start Mon Mar 30 2020 01:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46498 * 120.00009 * 2 1 4 4 C 1.53001 * 109.46852 * 269.99653 * 3 2 1 5 5 C 1.53000 * 109.46976 * 180.02562 * 4 3 2 6 6 N 1.46498 * 109.46999 * 179.97438 * 5 4 3 7 7 C 1.36934 * 120.00140 * 179.97438 * 6 5 4 8 8 H 1.08002 * 119.99914 * 0.02562 * 7 6 5 9 9 C 1.38812 * 120.00189 * 180.02562 * 7 6 5 10 10 N 1.31618 * 119.99970 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00097 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47183 * 89.99669 * 11 9 7 13 13 H 1.48495 * 109.47418 * 209.99931 * 11 9 7 14 14 H 1.48499 * 109.46886 * 330.00147 * 11 9 7 15 15 C 1.34778 * 119.99874 * 179.97438 * 2 1 3 16 16 O 1.21284 * 120.00329 * 180.02562 * 15 2 1 17 17 C 1.50700 * 119.99986 * 0.02562 * 15 2 1 18 18 C 1.53781 * 113.61480 * 199.70337 * 17 15 2 19 19 C 1.53956 * 87.02224 * 89.22741 * 18 17 15 20 20 C 1.52994 * 113.53883 * 270.81193 * 19 18 17 21 21 C 1.52997 * 113.74325 * 139.94437 * 19 18 17 22 22 C 1.53781 * 113.61445 * 297.30977 * 17 15 2 23 23 H 1.09002 * 109.47075 * 270.00330 * 1 2 3 24 24 H 1.08996 * 109.46636 * 30.00774 * 1 2 3 25 25 H 1.08998 * 109.46967 * 150.00222 * 1 2 3 26 26 H 1.09000 * 109.47292 * 29.99492 * 3 2 1 27 27 H 1.09007 * 109.46981 * 150.00169 * 3 2 1 28 28 H 1.09000 * 109.47041 * 299.99993 * 4 3 2 29 29 H 1.08998 * 109.47257 * 59.99730 * 4 3 2 30 30 H 1.09000 * 109.47131 * 299.99817 * 5 4 3 31 31 H 1.09007 * 109.47017 * 60.00417 * 5 4 3 32 32 H 0.97006 * 120.00087 * 0.02562 * 6 5 4 33 33 H 0.97004 * 119.99914 * 179.97438 * 10 9 7 34 34 H 1.09002 * 112.85358 * 68.50687 * 17 15 2 35 35 H 1.09004 * 113.61989 * 203.74966 * 18 17 15 36 36 H 1.09001 * 113.61336 * 334.65033 * 18 17 15 37 37 H 1.09002 * 109.47605 * 163.93151 * 20 19 18 38 38 H 1.08999 * 109.47227 * 283.93359 * 20 19 18 39 39 H 1.09009 * 109.47217 * 43.93646 * 20 19 18 40 40 H 1.09010 * 109.47053 * 322.40317 * 21 19 18 41 41 H 1.08998 * 109.47365 * 82.40149 * 21 19 18 42 42 H 1.08999 * 109.47154 * 202.40343 * 21 19 18 43 43 H 1.08999 * 113.61756 * 25.34690 * 22 17 15 44 44 H 1.09002 * 113.61774 * 156.25160 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 6 3.2182 3.0350 -1.4426 6 7 3.4629 3.4575 -2.8238 7 6 4.1361 4.6233 -3.0741 8 1 4.4871 5.2312 -2.2532 9 6 4.3676 5.0239 -4.3828 10 7 3.9404 4.2829 -5.3832 11 14 5.2866 6.6140 -4.7243 12 1 6.7423 6.3347 -4.8148 13 1 4.8132 7.1939 -6.0067 14 1 5.0351 7.5774 -3.6226 15 6 2.1389 -1.1672 0.0005 16 8 3.3518 -1.1673 0.0010 17 6 1.3854 -2.4723 0.0005 18 6 2.2260 -3.6690 0.4762 19 6 1.7491 -3.3347 1.9013 20 6 2.6552 -2.3416 2.6317 21 6 1.4171 -4.5672 2.7448 22 6 0.5170 -2.6823 1.2522 23 1 -0.3633 0.0001 1.0277 24 1 -0.3632 0.8899 -0.5139 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6085 2.0284 0.5137 27 1 3.1500 1.1383 0.5138 28 1 3.0417 0.9506 -1.9563 29 1 1.5002 1.8405 -1.9564 30 1 2.6294 3.7949 -0.9287 31 1 4.1706 2.9042 -0.9289 32 1 3.1474 2.9117 -3.5611 33 1 4.1018 4.5631 -6.2978 34 1 0.8554 -2.6551 -0.9342 35 1 1.8650 -4.6297 0.1090 36 1 3.2979 -3.5349 0.3308 37 1 2.1278 -1.9351 3.4946 38 1 3.5588 -2.8517 2.9654 39 1 2.9247 -1.5303 1.9553 40 1 0.9432 -5.3210 2.1158 41 1 2.3342 -4.9739 3.1708 42 1 0.7371 -4.2850 3.5486 43 1 0.2113 -1.7528 1.7325 44 1 -0.3122 -3.3727 1.0977 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483463378.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:57 Heat of formation + Delta-G solvation = -34.103844 kcal Electronic energy + Delta-G solvation = -20932.353016 eV Core-core repulsion = 17884.577666 eV Total energy + Delta-G solvation = -3047.775350 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.03431 -39.19281 -37.44709 -36.41490 -34.11117 -32.19896 -31.22549 -28.32695 -28.00915 -27.11327 -26.54427 -25.27954 -23.61525 -22.42500 -20.25614 -19.18961 -19.13948 -17.86668 -17.36794 -16.83267 -16.54490 -16.04802 -15.53547 -15.49400 -15.06494 -15.00795 -14.95066 -14.24930 -13.95661 -13.64474 -13.55665 -13.40887 -13.33190 -13.04306 -12.79116 -12.75829 -12.67738 -12.47745 -12.41625 -12.09146 -12.06511 -11.83593 -11.81052 -11.70023 -11.00235 -10.97583 -10.91144 -10.69485 -9.65576 -9.05891 -7.98676 -5.29106 1.45028 1.48219 1.56602 1.62980 2.02514 2.54107 3.34660 3.48027 3.55025 3.62196 3.73569 3.84894 3.95388 4.13907 4.23927 4.34362 4.35831 4.50930 4.56819 4.59665 4.69424 4.72861 4.74081 4.79429 4.83735 4.88871 4.89764 4.95211 5.02155 5.03504 5.18721 5.23486 5.26260 5.28116 5.29327 5.45226 5.48069 5.52976 5.63262 6.23341 6.42430 7.20836 7.28691 8.03408 8.27302 9.25311 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.044721 B = 0.003088 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.948215 B = 9065.966573 C = 9129.862747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.613 5.613 3 C 0.127 3.873 4 C -0.120 4.120 5 C 0.155 3.845 6 N -0.750 5.750 7 C -0.250 4.250 8 H 0.077 0.923 9 C -0.079 4.079 10 N -0.972 5.972 11 Si 0.980 3.020 12 H -0.287 1.287 13 H -0.292 1.292 14 H -0.266 1.266 15 C 0.525 3.475 16 O -0.583 6.583 17 C -0.141 4.141 18 C -0.120 4.120 19 C -0.091 4.091 20 C -0.144 4.144 21 C -0.130 4.130 22 C -0.105 4.105 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.106 0.894 27 H 0.064 0.936 28 H 0.035 0.965 29 H 0.068 0.932 30 H 0.034 0.966 31 H 0.012 0.988 32 H 0.372 0.628 33 H 0.253 0.747 34 H 0.120 0.880 35 H 0.110 0.890 36 H 0.049 0.951 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.070 0.930 41 H 0.048 0.952 42 H 0.064 0.936 43 H 0.079 0.921 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.318 -17.449 17.681 28.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.344 5.344 3 C 0.003 3.997 4 C -0.159 4.159 5 C 0.028 3.972 6 N -0.392 5.392 7 C -0.382 4.382 8 H 0.095 0.905 9 C -0.271 4.271 10 N -0.623 5.623 11 Si 0.808 3.192 12 H -0.215 1.215 13 H -0.218 1.218 14 H -0.191 1.191 15 C 0.315 3.685 16 O -0.464 6.464 17 C -0.162 4.162 18 C -0.158 4.158 19 C -0.091 4.091 20 C -0.201 4.201 21 C -0.187 4.187 22 C -0.142 4.142 23 H 0.098 0.902 24 H 0.097 0.903 25 H 0.107 0.893 26 H 0.124 0.876 27 H 0.082 0.918 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.052 0.948 31 H 0.030 0.970 32 H 0.203 0.797 33 H 0.061 0.939 34 H 0.138 0.862 35 H 0.128 0.872 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.097 0.903 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.634 -17.275 17.767 27.816 hybrid contribution 0.908 0.791 -1.020 1.579 sum -11.726 -16.484 16.747 26.262 Atomic orbital electron populations 1.22169 0.76912 1.04584 1.03461 1.47963 1.08647 1.05148 1.72678 1.21285 0.97732 0.85328 0.95316 1.21850 1.00019 0.96035 0.98025 1.20700 0.96378 0.94091 0.86008 1.42614 1.68201 1.25476 1.02936 1.19688 1.27421 0.98850 0.92248 0.90464 1.25676 1.03171 1.02820 0.95392 1.69835 1.53195 1.40899 0.98333 0.85053 0.77862 0.79066 0.77254 1.21458 1.21800 1.19065 1.20743 0.87389 0.86186 0.74144 1.90687 1.16262 1.87916 1.51525 1.22392 0.99533 0.91738 1.02494 1.23087 0.99425 0.97285 0.95955 1.21866 0.96314 0.96634 0.94305 1.21820 0.98989 0.99070 1.00270 1.21685 1.01391 0.95881 0.99720 1.23159 0.96397 1.02032 0.92599 0.90193 0.90342 0.89252 0.87625 0.91768 0.94647 0.91365 0.94759 0.96978 0.79662 0.93872 0.86232 0.87163 0.93200 0.91842 0.93302 0.93323 0.91126 0.93244 0.91653 0.90267 0.86188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.97 9.12 127.77 1.17 2.13 16 2 N -0.61 -14.30 2.87 -846.73 -2.43 -16.73 16 3 C 0.13 3.50 5.41 86.38 0.47 3.97 16 4 C -0.12 -4.25 5.65 30.59 0.17 -4.07 16 5 C 0.16 6.64 6.26 86.38 0.54 7.18 16 6 N -0.75 -40.98 5.60 -343.45 -1.92 -42.91 16 7 C -0.25 -14.73 9.99 84.03 0.84 -13.89 16 8 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 9 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 10 N -0.97 -61.78 13.06 21.65 0.28 -61.50 16 11 Si 0.98 47.48 29.55 68.60 2.03 49.51 16 12 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 13 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 14 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 15 C 0.53 14.16 5.25 87.66 0.46 14.62 16 16 O -0.58 -21.56 14.03 -3.04 -0.04 -21.60 16 17 C -0.14 -2.55 3.09 -11.01 -0.03 -2.58 16 18 C -0.12 -2.23 6.76 31.18 0.21 -2.02 16 19 C -0.09 -1.45 1.39 -51.60 -0.07 -1.52 16 20 C -0.14 -3.02 8.99 71.98 0.65 -2.37 16 21 C -0.13 -1.50 9.20 71.98 0.66 -0.83 16 22 C -0.10 -1.25 6.04 31.12 0.19 -1.06 16 23 H 0.08 0.76 7.12 -2.39 -0.02 0.75 16 24 H 0.08 1.05 8.07 -2.39 -0.02 1.04 16 25 H 0.09 0.93 6.51 -2.39 -0.02 0.91 16 26 H 0.11 2.30 8.07 -2.39 -0.02 2.28 16 27 H 0.06 2.04 7.42 -2.38 -0.02 2.02 16 28 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.37 21.61 7.67 -92.70 -0.71 20.90 16 33 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 34 H 0.12 1.76 7.89 -2.39 -0.02 1.74 16 35 H 0.11 1.48 7.98 -2.38 -0.02 1.47 16 36 H 0.05 1.28 7.31 -2.39 -0.02 1.26 16 37 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.05 1.31 4.17 -2.38 -0.01 1.30 16 40 H 0.07 0.62 7.96 -2.38 -0.02 0.60 16 41 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 43 H 0.08 0.91 6.13 -2.39 -0.01 0.89 16 44 H 0.12 0.79 8.10 -2.39 -0.02 0.77 16 Total: -1.00 -75.68 344.76 3.88 -71.80 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: 0.25 Total: 26.10 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 5.71 Total: -4.67 kcal Atomic # 7 Polarization: -117.06 SS G_CDS: -4.07 Total: -121.13 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.04 Total: -21.60 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Total: -75.68 3.88 -71.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483463378.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.696 kcal (2) G-P(sol) polarization free energy of solvation -75.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds