Wall clock time and date at job start Mon Mar 30 2020 01:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36940 * 120.00169 * 2 1 4 4 H 1.08000 * 120.00054 * 201.12063 * 3 2 1 5 5 C 1.38814 * 119.99775 * 21.11732 * 3 2 1 6 6 N 1.31617 * 120.00294 * 17.02848 * 5 3 2 7 7 Si 1.86800 * 119.99704 * 197.02952 * 5 3 2 8 8 H 1.48494 * 109.47363 * 359.97438 * 7 5 3 9 9 H 1.48505 * 109.46999 * 120.00324 * 7 5 3 10 10 H 1.48506 * 109.47010 * 239.99726 * 7 5 3 11 11 C 1.46500 * 119.99795 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47085 * 90.00012 * 11 2 1 13 13 N 1.46500 * 109.47085 * 179.97438 * 12 11 2 14 14 C 1.34776 * 120.00144 * 179.97438 * 13 12 11 15 15 O 1.21281 * 119.99775 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00121 * 179.97438 * 14 13 12 17 17 H 1.09004 * 110.53640 * 36.43176 * 16 14 13 18 18 C 1.54962 * 110.52665 * 159.06048 * 16 14 13 19 19 C 1.54897 * 102.77223 * 156.56748 * 18 16 14 20 20 C 1.54258 * 104.19654 * 322.08160 * 19 18 16 21 21 C 1.53879 * 106.59927 * 23.61076 * 20 19 18 22 22 C 1.53005 * 110.03061 * 119.28124 * 21 20 19 23 23 C 1.52995 * 110.03085 * 240.66556 * 21 20 19 24 24 H 1.09003 * 109.46442 * 272.70671 * 1 2 3 25 25 H 1.09003 * 109.47187 * 32.69785 * 1 2 3 26 26 H 1.08996 * 109.47413 * 152.70348 * 1 2 3 27 27 H 0.96996 * 120.00315 * 180.02562 * 6 5 3 28 28 H 1.08992 * 109.47157 * 329.99665 * 11 2 1 29 29 H 1.08999 * 109.46702 * 209.99491 * 11 2 1 30 30 H 1.08999 * 109.47115 * 59.99551 * 12 11 2 31 31 H 1.08998 * 109.46786 * 299.99876 * 12 11 2 32 32 H 0.97005 * 119.99822 * 359.97438 * 13 12 11 33 33 H 1.09000 * 110.72416 * 38.25714 * 18 16 14 34 34 H 1.09004 * 110.92494 * 274.97146 * 18 16 14 35 35 H 1.09003 * 110.48120 * 203.40250 * 19 18 16 36 36 H 1.08996 * 110.59843 * 80.81995 * 19 18 16 37 37 H 1.08996 * 110.03706 * 264.32514 * 20 19 18 38 38 H 1.09003 * 110.03076 * 142.89683 * 20 19 18 39 39 H 1.08999 * 109.47091 * 182.08960 * 22 21 20 40 40 H 1.09000 * 109.46841 * 62.09856 * 22 21 20 41 41 H 1.08995 * 109.47555 * 302.09371 * 22 21 20 42 42 H 1.08999 * 109.47529 * 302.38594 * 23 21 20 43 43 H 1.08996 * 109.47358 * 62.39340 * 23 21 20 44 44 H 1.09007 * 109.46993 * 182.39292 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1754 1.2173 -0.3370 5 6 1.5256 2.3477 0.4331 6 7 0.4217 2.2752 1.1462 7 14 2.2525 4.0141 0.0039 8 1 3.4868 3.8237 -0.7994 9 1 1.2654 4.7970 -0.7822 10 1 2.5833 4.7464 1.2528 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7098 -1.4433 13 7 3.1855 -2.9782 -1.4439 14 6 3.5220 -3.5615 -2.6113 15 8 3.2177 -3.0366 -3.6614 16 6 4.2766 -4.8661 -2.6119 17 1 3.9438 -5.5006 -1.7904 18 6 4.0987 -5.5961 -3.9672 19 6 5.3455 -6.5132 -4.0284 20 6 6.4745 -5.6580 -3.4172 21 6 5.7950 -4.6115 -2.5167 22 6 6.2651 -4.7801 -1.0705 23 6 6.1222 -3.2016 -3.0128 24 1 -0.3632 0.0485 1.0266 25 1 -0.3634 0.8648 -0.5552 26 1 -0.3634 -0.9132 -0.4713 27 1 -0.0146 3.0870 1.4485 28 1 1.6085 -2.0285 0.5129 29 1 3.1499 -1.1386 0.5133 30 1 3.0415 -0.9499 -1.9568 31 1 1.5000 -1.8399 -1.9571 32 1 3.4286 -3.3983 -0.6039 33 1 4.1022 -4.8838 -4.7923 34 1 3.1833 -6.1878 -3.9734 35 1 5.5788 -6.7712 -5.0614 36 1 5.1874 -7.4151 -3.4372 37 1 7.0367 -5.1614 -4.2081 38 1 7.1392 -6.2860 -2.8240 39 1 5.7508 -4.0593 -0.4349 40 1 7.3404 -4.6104 -1.0158 41 1 6.0391 -5.7907 -0.7304 42 1 7.2033 -3.0636 -3.0283 43 1 5.7245 -3.0690 -4.0188 44 1 5.6720 -2.4677 -2.3443 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492376308.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:58 Heat of formation + Delta-G solvation = -39.720390 kcal Electronic energy + Delta-G solvation = -21299.257655 eV Core-core repulsion = 18251.238754 eV Total energy + Delta-G solvation = -3048.018901 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.46186 -37.83349 -35.99618 -34.13267 -32.33873 -31.35656 -29.70894 -27.78681 -27.42956 -25.85511 -24.89527 -23.31148 -21.26992 -20.64855 -20.21775 -18.72561 -16.97780 -16.58541 -15.79225 -15.64032 -14.91092 -14.80820 -14.35800 -13.98772 -13.57770 -13.51494 -13.37512 -13.25199 -12.96716 -12.41139 -12.38576 -12.04057 -11.82643 -11.59081 -11.25799 -11.17302 -10.92121 -10.87271 -10.80169 -10.71457 -10.64026 -10.62524 -10.56776 -10.33713 -9.94191 -9.91260 -9.46921 -8.64694 -8.53927 -6.81633 -5.75952 -3.19712 2.89820 3.38082 3.45181 3.47410 3.51295 4.31530 4.39097 4.50014 4.57614 5.02698 5.09950 5.17016 5.20065 5.23734 5.30594 5.38490 5.45693 5.55741 5.63759 5.67527 5.74320 5.74656 5.83159 5.85358 5.91582 5.95218 5.98671 6.11440 6.17041 6.24590 6.26732 6.33688 6.64025 6.67423 6.77517 6.92964 7.34979 7.66688 7.80339 7.83135 8.35801 8.54261 9.20355 9.83965 10.31603 11.30174 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030898 B = 0.003866 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.989722 B = 7241.582122 C = 7537.250500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.597 5.597 3 C -0.259 4.259 4 H 0.070 0.930 5 C 0.003 3.997 6 N -0.904 5.904 7 Si 0.903 3.097 8 H -0.277 1.277 9 H -0.288 1.288 10 H -0.290 1.290 11 C 0.144 3.856 12 C 0.095 3.905 13 N -0.725 5.725 14 C 0.520 3.480 15 O -0.544 6.544 16 C -0.108 4.108 17 H 0.092 0.908 18 C -0.108 4.108 19 C -0.124 4.124 20 C -0.114 4.114 21 C -0.053 4.053 22 C -0.143 4.143 23 C -0.148 4.148 24 H 0.028 0.972 25 H 0.045 0.955 26 H -0.001 1.001 27 H 0.252 0.748 28 H 0.040 0.960 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.395 0.605 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.064 0.936 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.353 -18.116 -5.596 21.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.320 5.320 3 C -0.388 4.388 4 H 0.087 0.913 5 C -0.195 4.195 6 N -0.549 5.549 7 Si 0.732 3.268 8 H -0.202 1.202 9 H -0.215 1.215 10 H -0.217 1.217 11 C 0.015 3.985 12 C -0.031 4.031 13 N -0.376 5.376 14 C 0.306 3.694 15 O -0.422 6.422 16 C -0.130 4.130 17 H 0.110 0.890 18 C -0.146 4.146 19 C -0.161 4.161 20 C -0.152 4.152 21 C -0.054 4.054 22 C -0.200 4.200 23 C -0.205 4.205 24 H 0.047 0.953 25 H 0.064 0.936 26 H 0.018 0.982 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.228 0.772 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.993 -17.545 -6.258 21.139 hybrid contribution 0.357 0.833 0.297 0.954 sum 10.350 -16.712 -5.960 20.541 Atomic orbital electron populations 1.20808 0.82357 0.96097 0.99106 1.43808 1.01930 1.00377 1.85896 1.19231 0.97400 0.85063 1.37129 0.91254 1.24953 0.98070 0.98427 0.98078 1.70108 1.20737 1.26956 1.37100 0.86218 0.78497 0.84275 0.77763 1.20247 1.21512 1.21738 1.20828 0.96628 0.89105 0.91896 1.22370 0.95604 0.83283 1.01831 1.46163 1.58214 1.25172 1.08068 1.20349 0.78892 0.86219 0.83931 1.90676 1.54899 1.65205 1.31398 1.22323 0.95384 0.94793 1.00463 0.88983 1.22419 0.97695 0.98004 0.96449 1.22344 0.95024 0.97966 1.00779 1.22281 0.97665 0.96665 0.98594 1.21057 0.92244 0.96197 0.95900 1.21981 1.01421 1.01686 0.94913 1.22035 1.01233 0.94987 1.02231 0.95338 0.93578 0.98234 0.93751 0.94183 0.93042 0.91708 0.92387 0.77205 0.89744 0.91471 0.91541 0.91697 0.91483 0.91561 0.92315 0.92299 0.92400 0.92587 0.91696 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.00 8.99 59.85 0.54 4.54 16 2 N -0.60 -15.07 2.92 -181.12 -0.53 -15.60 16 3 C -0.26 -7.16 9.65 -15.06 -0.15 -7.31 16 4 H 0.07 1.89 7.89 -52.49 -0.41 1.47 16 5 C 0.00 0.09 5.00 -17.43 -0.09 0.00 16 6 N -0.90 -26.50 10.85 55.49 0.60 -25.90 16 7 Si 0.90 22.05 29.59 -169.99 -5.03 17.02 16 8 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 9 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 C 0.14 2.87 5.77 -4.04 -0.02 2.84 16 12 C 0.10 1.76 6.00 -4.04 -0.02 1.74 16 13 N -0.73 -10.57 5.54 -60.29 -0.33 -10.90 16 14 C 0.52 7.79 4.94 -10.98 -0.05 7.73 16 15 O -0.54 -10.38 15.18 5.56 0.08 -10.30 16 16 C -0.11 -1.19 2.71 -90.07 -0.24 -1.43 16 17 H 0.09 0.85 7.85 -51.93 -0.41 0.44 16 18 C -0.11 -1.14 6.15 -24.69 -0.15 -1.29 16 19 C -0.12 -1.02 6.83 -25.07 -0.17 -1.19 16 20 C -0.11 -0.96 6.11 -25.62 -0.16 -1.12 16 21 C -0.05 -0.53 0.86 -153.39 -0.13 -0.66 16 22 C -0.14 -1.20 8.15 37.16 0.30 -0.89 16 23 C -0.15 -1.76 7.16 37.15 0.27 -1.49 16 24 H 0.03 0.75 7.52 -51.93 -0.39 0.36 16 25 H 0.05 1.23 7.16 -51.93 -0.37 0.86 16 26 H 0.00 -0.02 8.05 -51.93 -0.42 -0.44 16 27 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 29 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 30 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.39 4.60 8.47 -40.82 -0.35 4.25 16 33 H 0.08 1.07 7.26 -51.93 -0.38 0.70 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.57 7.67 -51.93 -0.40 0.18 16 38 H 0.07 0.48 7.67 -51.93 -0.40 0.08 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.88 7.58 -51.93 -0.39 0.49 16 44 H 0.06 0.82 7.26 -51.93 -0.38 0.44 16 LS Contribution 345.80 15.07 5.21 5.21 Total: -1.00 -31.61 345.80 -8.15 -39.75 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -8.07 Total: -0.75 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -0.08 Total: 1.47 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -0.26 Total: -52.40 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.08 Total: -10.30 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.61 -8.15 -39.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492376308.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.033 kcal (2) G-P(sol) polarization free energy of solvation -31.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds