Wall clock time and date at job start Mon Mar 30 2020 01:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36940 * 120.00169 * 2 1 4 4 H 1.08000 * 120.00054 * 201.12063 * 3 2 1 5 5 C 1.38814 * 119.99775 * 21.11732 * 3 2 1 6 6 N 1.31617 * 120.00294 * 17.02848 * 5 3 2 7 7 Si 1.86800 * 119.99704 * 197.02952 * 5 3 2 8 8 H 1.48494 * 109.47363 * 359.97438 * 7 5 3 9 9 H 1.48505 * 109.46999 * 120.00324 * 7 5 3 10 10 H 1.48506 * 109.47010 * 239.99726 * 7 5 3 11 11 C 1.46500 * 119.99795 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47085 * 90.00012 * 11 2 1 13 13 N 1.46500 * 109.47085 * 179.97438 * 12 11 2 14 14 C 1.34776 * 120.00144 * 179.97438 * 13 12 11 15 15 O 1.21281 * 119.99775 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00121 * 179.97438 * 14 13 12 17 17 H 1.09004 * 110.53640 * 36.43176 * 16 14 13 18 18 C 1.54962 * 110.52665 * 159.06048 * 16 14 13 19 19 C 1.54897 * 102.77223 * 156.56748 * 18 16 14 20 20 C 1.54258 * 104.19654 * 322.08160 * 19 18 16 21 21 C 1.53879 * 106.59927 * 23.61076 * 20 19 18 22 22 C 1.53005 * 110.03061 * 119.28124 * 21 20 19 23 23 C 1.52995 * 110.03085 * 240.66556 * 21 20 19 24 24 H 1.09003 * 109.46442 * 272.70671 * 1 2 3 25 25 H 1.09003 * 109.47187 * 32.69785 * 1 2 3 26 26 H 1.08996 * 109.47413 * 152.70348 * 1 2 3 27 27 H 0.96996 * 120.00315 * 180.02562 * 6 5 3 28 28 H 1.08992 * 109.47157 * 329.99665 * 11 2 1 29 29 H 1.08999 * 109.46702 * 209.99491 * 11 2 1 30 30 H 1.08999 * 109.47115 * 59.99551 * 12 11 2 31 31 H 1.08998 * 109.46786 * 299.99876 * 12 11 2 32 32 H 0.97005 * 119.99822 * 359.97438 * 13 12 11 33 33 H 1.09000 * 110.72416 * 38.25714 * 18 16 14 34 34 H 1.09004 * 110.92494 * 274.97146 * 18 16 14 35 35 H 1.09003 * 110.48120 * 203.40250 * 19 18 16 36 36 H 1.08996 * 110.59843 * 80.81995 * 19 18 16 37 37 H 1.08996 * 110.03706 * 264.32514 * 20 19 18 38 38 H 1.09003 * 110.03076 * 142.89683 * 20 19 18 39 39 H 1.08999 * 109.47091 * 182.08960 * 22 21 20 40 40 H 1.09000 * 109.46841 * 62.09856 * 22 21 20 41 41 H 1.08995 * 109.47555 * 302.09371 * 22 21 20 42 42 H 1.08999 * 109.47529 * 302.38594 * 23 21 20 43 43 H 1.08996 * 109.47358 * 62.39340 * 23 21 20 44 44 H 1.09007 * 109.46993 * 182.39292 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1754 1.2173 -0.3370 5 6 1.5256 2.3477 0.4331 6 7 0.4217 2.2752 1.1462 7 14 2.2525 4.0141 0.0039 8 1 3.4868 3.8237 -0.7994 9 1 1.2654 4.7970 -0.7822 10 1 2.5833 4.7464 1.2528 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7098 -1.4433 13 7 3.1855 -2.9782 -1.4439 14 6 3.5220 -3.5615 -2.6113 15 8 3.2177 -3.0366 -3.6614 16 6 4.2766 -4.8661 -2.6119 17 1 3.9438 -5.5006 -1.7904 18 6 4.0987 -5.5961 -3.9672 19 6 5.3455 -6.5132 -4.0284 20 6 6.4745 -5.6580 -3.4172 21 6 5.7950 -4.6115 -2.5167 22 6 6.2651 -4.7801 -1.0705 23 6 6.1222 -3.2016 -3.0128 24 1 -0.3632 0.0485 1.0266 25 1 -0.3634 0.8648 -0.5552 26 1 -0.3634 -0.9132 -0.4713 27 1 -0.0146 3.0870 1.4485 28 1 1.6085 -2.0285 0.5129 29 1 3.1499 -1.1386 0.5133 30 1 3.0415 -0.9499 -1.9568 31 1 1.5000 -1.8399 -1.9571 32 1 3.4286 -3.3983 -0.6039 33 1 4.1022 -4.8838 -4.7923 34 1 3.1833 -6.1878 -3.9734 35 1 5.5788 -6.7712 -5.0614 36 1 5.1874 -7.4151 -3.4372 37 1 7.0367 -5.1614 -4.2081 38 1 7.1392 -6.2860 -2.8240 39 1 5.7508 -4.0593 -0.4349 40 1 7.3404 -4.6104 -1.0158 41 1 6.0391 -5.7907 -0.7304 42 1 7.2033 -3.0636 -3.0283 43 1 5.7245 -3.0690 -4.0188 44 1 5.6720 -2.4677 -2.3443 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001492376308.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:58 Heat of formation + Delta-G solvation = -59.413944 kcal Electronic energy + Delta-G solvation = -21300.111632 eV Core-core repulsion = 18251.238754 eV Total energy + Delta-G solvation = -3048.872878 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.51813 -38.92258 -37.77674 -35.70042 -33.37282 -33.04415 -30.85866 -29.22217 -28.24363 -27.92991 -25.86045 -24.87913 -22.49693 -22.25450 -21.16686 -19.75008 -18.76507 -17.92100 -17.18363 -16.73196 -16.58176 -16.05859 -15.58185 -15.40679 -15.12165 -14.63263 -14.60436 -14.23467 -14.20558 -14.11514 -13.70344 -13.09627 -12.95174 -12.82737 -12.76185 -12.67056 -12.50754 -12.36671 -12.18421 -11.98904 -11.93386 -11.81511 -11.64049 -11.50111 -11.41970 -11.30795 -10.78020 -10.62918 -10.03297 -8.87790 -7.88928 -5.34855 1.43455 1.46267 1.56200 1.69906 2.21950 2.52043 3.25676 3.49929 3.57844 3.69041 3.82672 4.13034 4.20979 4.27735 4.35334 4.39844 4.42922 4.48660 4.53014 4.64717 4.72296 4.76374 4.79218 4.91488 5.02173 5.03509 5.04245 5.10779 5.12990 5.18660 5.24640 5.29995 5.35203 5.40890 5.46154 5.53140 5.55467 5.58828 5.65487 6.27773 6.64907 7.09861 7.34551 7.81107 8.23629 9.15783 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030898 B = 0.003866 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.989722 B = 7241.582122 C = 7537.250500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.616 5.616 3 C -0.268 4.268 4 H 0.069 0.931 5 C -0.049 4.049 6 N -0.934 5.934 7 Si 0.964 3.036 8 H -0.270 1.270 9 H -0.291 1.291 10 H -0.287 1.287 11 C 0.148 3.852 12 C 0.117 3.883 13 N -0.714 5.714 14 C 0.518 3.482 15 O -0.591 6.591 16 C -0.103 4.103 17 H 0.121 0.879 18 C -0.112 4.112 19 C -0.116 4.116 20 C -0.112 4.112 21 C -0.051 4.051 22 C -0.141 4.141 23 C -0.145 4.145 24 H 0.009 0.991 25 H 0.017 0.983 26 H 0.030 0.970 27 H 0.250 0.750 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.034 0.966 31 H 0.041 0.959 32 H 0.413 0.587 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.088 0.912 39 H 0.051 0.949 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.038 0.962 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.981 -20.407 -5.076 24.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.340 5.340 3 C -0.398 4.398 4 H 0.087 0.913 5 C -0.244 4.244 6 N -0.580 5.580 7 Si 0.793 3.207 8 H -0.194 1.194 9 H -0.218 1.218 10 H -0.214 1.214 11 C 0.021 3.979 12 C -0.010 4.010 13 N -0.366 5.366 14 C 0.306 3.694 15 O -0.471 6.471 16 C -0.124 4.124 17 H 0.139 0.861 18 C -0.150 4.150 19 C -0.153 4.153 20 C -0.150 4.150 21 C -0.051 4.051 22 C -0.198 4.198 23 C -0.202 4.202 24 H 0.027 0.973 25 H 0.035 0.965 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.249 0.751 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.107 0.893 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.058 0.942 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 11.656 -19.886 -5.720 23.750 hybrid contribution -0.135 1.501 0.089 1.510 sum 11.521 -18.385 -5.631 22.416 Atomic orbital electron populations 1.20574 0.82552 0.96293 0.97692 1.44045 1.02253 1.01594 1.86070 1.19507 0.97540 0.86390 1.36332 0.91336 1.25688 0.98758 1.01583 0.98401 1.70238 1.22027 1.27464 1.38281 0.85254 0.77856 0.80219 0.77411 1.19442 1.21797 1.21423 1.20934 0.96766 0.87598 0.92617 1.21787 0.94654 0.84364 1.00189 1.45964 1.57622 1.23786 1.09215 1.21141 0.78112 0.87184 0.82948 1.90660 1.56648 1.66704 1.33088 1.22420 0.95625 0.92519 1.01816 0.86054 1.22431 0.99517 0.97934 0.95114 1.22330 0.93288 0.97972 1.01702 1.22284 0.97872 0.96383 0.98434 1.21088 0.91423 0.95098 0.97519 1.21984 1.01790 1.02814 0.93238 1.22003 1.01816 0.96205 1.00205 0.97299 0.96453 0.95103 0.94096 0.91693 0.92383 0.94793 0.94078 0.75070 0.92763 0.90854 0.90937 0.89582 0.92011 0.89336 0.92952 0.91576 0.90249 0.91137 0.94249 0.94508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.70 8.99 127.77 1.15 9.85 16 2 N -0.62 -31.14 2.92 -726.93 -2.13 -33.26 16 3 C -0.27 -14.91 9.65 84.03 0.81 -14.10 16 4 H 0.07 3.74 7.89 -2.91 -0.02 3.72 16 5 C -0.05 -2.77 5.00 84.86 0.42 -2.34 16 6 N -0.93 -55.57 10.85 21.65 0.24 -55.34 16 7 Si 0.96 45.78 29.59 68.60 2.03 47.81 16 8 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 9 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 10 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 11 C 0.15 5.74 5.77 86.38 0.50 6.24 16 12 C 0.12 4.35 6.00 86.38 0.52 4.87 16 13 N -0.71 -20.09 5.54 -463.06 -2.56 -22.66 16 14 C 0.52 15.30 4.94 87.66 0.43 15.73 16 15 O -0.59 -23.23 15.18 -3.03 -0.05 -23.27 16 16 C -0.10 -2.05 2.71 -10.44 -0.03 -2.07 16 17 H 0.12 1.75 7.85 -2.38 -0.02 1.73 16 18 C -0.11 -2.21 6.15 31.91 0.20 -2.02 16 19 C -0.12 -1.55 6.83 31.67 0.22 -1.33 16 20 C -0.11 -1.55 6.11 31.32 0.19 -1.36 16 21 C -0.05 -0.88 0.86 -51.46 -0.04 -0.93 16 22 C -0.14 -1.87 8.15 71.98 0.59 -1.28 16 23 C -0.14 -3.41 7.16 71.98 0.52 -2.89 16 24 H 0.01 0.47 7.52 -2.39 -0.02 0.45 16 25 H 0.02 0.93 7.16 -2.39 -0.02 0.91 16 26 H 0.03 1.31 8.05 -2.39 -0.02 1.29 16 27 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 28 H 0.06 2.22 8.07 -2.39 -0.02 2.20 16 29 H 0.06 2.18 8.04 -2.39 -0.02 2.17 16 30 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.41 8.67 8.47 -92.70 -0.79 7.88 16 33 H 0.05 1.41 7.26 -2.39 -0.02 1.39 16 34 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.06 0.93 7.67 -2.39 -0.02 0.91 16 38 H 0.09 0.88 7.67 -2.39 -0.02 0.86 16 39 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.04 1.11 7.58 -2.39 -0.02 1.09 16 44 H 0.04 1.01 7.26 -2.38 -0.02 0.99 16 Total: -1.00 -70.06 345.80 3.16 -66.90 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 0.17 Total: 11.46 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: 5.47 Total: 8.37 kcal Atomic # 7 Polarization: -106.81 SS G_CDS: -4.45 Total: -111.26 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.05 Total: -23.27 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -70.06 3.16 -66.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492376308.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.482 kcal (2) G-P(sol) polarization free energy of solvation -70.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds