Wall clock time and date at job start Mon Mar 30 2020 01:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36939 * 119.99807 * 2 1 4 4 H 1.07998 * 119.99862 * 201.55485 * 3 2 1 5 5 C 1.38815 * 120.00203 * 21.54689 * 3 2 1 6 6 N 1.31621 * 119.99508 * 15.60911 * 5 3 2 7 7 Si 1.86797 * 120.00188 * 195.60419 * 5 3 2 8 8 H 1.48502 * 109.47126 * 0.02562 * 7 5 3 9 9 H 1.48493 * 109.47085 * 120.00265 * 7 5 3 10 10 H 1.48501 * 109.47097 * 240.00630 * 7 5 3 11 11 C 1.46492 * 120.00083 * 180.02562 * 2 1 3 12 12 C 1.53006 * 109.47294 * 89.99658 * 11 2 1 13 13 N 1.46505 * 109.47161 * 179.97438 * 12 11 2 14 14 C 1.34768 * 119.99785 * 180.02562 * 13 12 11 15 15 O 1.21282 * 120.00515 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.99964 * 179.97438 * 14 13 12 17 17 H 1.09003 * 110.53807 * 324.93284 * 16 14 13 18 18 C 1.54885 * 110.48858 * 202.31300 * 16 14 13 19 19 C 1.54971 * 102.78038 * 203.40742 * 18 16 14 20 20 C 1.54269 * 104.15770 * 37.88758 * 19 18 16 21 21 C 1.53872 * 106.64053 * 336.44650 * 20 19 18 22 22 C 1.52997 * 110.02991 * 119.25844 * 21 20 19 23 23 C 1.52998 * 110.03622 * 240.63945 * 21 20 19 24 24 H 1.08997 * 109.46562 * 273.16396 * 1 2 3 25 25 H 1.09004 * 109.46995 * 33.16087 * 1 2 3 26 26 H 1.09004 * 109.47098 * 153.16240 * 1 2 3 27 27 H 0.96995 * 119.99425 * 179.97438 * 6 5 3 28 28 H 1.09000 * 109.47319 * 329.99579 * 11 2 1 29 29 H 1.09007 * 109.47150 * 209.99353 * 11 2 1 30 30 H 1.09001 * 109.46769 * 60.00222 * 12 11 2 31 31 H 1.08996 * 109.47207 * 300.00063 * 12 11 2 32 32 H 0.97000 * 119.99864 * 0.02562 * 13 12 11 33 33 H 1.08998 * 110.75941 * 321.69899 * 18 16 14 34 34 H 1.09007 * 110.75620 * 85.06945 * 18 16 14 35 35 H 1.09003 * 110.47629 * 279.24034 * 19 18 16 36 36 H 1.08992 * 110.53105 * 156.56964 * 19 18 16 37 37 H 1.09003 * 110.03173 * 217.13796 * 20 19 18 38 38 H 1.09001 * 110.03236 * 95.75787 * 20 19 18 39 39 H 1.08998 * 109.47346 * 56.36445 * 22 21 20 40 40 H 1.09004 * 109.47212 * 176.36312 * 22 21 20 41 41 H 1.08994 * 109.47592 * 296.36271 * 22 21 20 42 42 H 1.09005 * 109.46723 * 58.54592 * 23 21 20 43 43 H 1.09001 * 109.47491 * 178.54775 * 23 21 20 44 44 H 1.09001 * 109.47064 * 298.55304 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1730 1.2187 -0.3436 5 6 1.5284 2.3461 0.4415 6 7 0.4138 2.2716 1.1377 7 14 2.2741 4.0129 0.0477 8 1 3.5177 3.8248 -0.7418 9 1 1.3045 4.8152 -0.7405 10 1 2.5927 4.7238 1.3120 11 6 2.1975 -1.2686 -0.0006 12 6 2.4525 -1.7098 -1.4433 13 7 3.1856 -2.9782 -1.4438 14 6 3.5230 -3.5610 -2.6112 15 8 3.2202 -3.0352 -3.6614 16 6 4.2775 -4.8655 -2.6118 17 1 4.9767 -4.9032 -1.7764 18 6 5.0258 -5.0583 -3.9541 19 6 5.2016 -6.5961 -4.0308 20 6 3.8857 -7.1556 -3.4518 21 6 3.2981 -6.0558 -2.5503 22 6 1.9235 -5.6307 -3.0705 23 6 3.1795 -6.5645 -1.1123 24 1 -0.3632 0.0567 1.0261 25 1 -0.3633 0.8603 -0.5621 26 1 -0.3633 -0.9170 -0.4640 27 1 -0.0201 3.0823 1.4465 28 1 1.6085 -2.0285 0.5130 29 1 3.1500 -1.1385 0.5133 30 1 3.0416 -0.9499 -1.9568 31 1 1.5001 -1.8399 -1.9572 32 1 3.4280 -3.3986 -0.6040 33 1 4.4235 -4.6970 -4.7876 34 1 5.9947 -4.5593 -3.9315 35 1 6.0503 -6.9135 -3.4249 36 1 5.3295 -6.9151 -5.0651 37 1 4.0873 -8.0516 -2.8647 38 1 3.1912 -7.3872 -4.2594 39 1 1.2724 -6.5028 -3.1313 40 1 1.4879 -4.8989 -2.3901 41 1 2.0306 -5.1876 -4.0605 42 1 4.1629 -6.8658 -0.7513 43 1 2.7868 -5.7705 -0.4772 44 1 2.5044 -7.4199 -1.0840 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492376309.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:01 Heat of formation + Delta-G solvation = -39.728208 kcal Electronic energy + Delta-G solvation = -21267.845012 eV Core-core repulsion = 18219.825772 eV Total energy + Delta-G solvation = -3048.019240 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.46794 -37.83732 -35.99354 -34.12890 -32.35164 -31.35681 -29.71301 -27.78610 -27.45028 -25.85630 -24.90038 -23.30788 -21.27397 -20.64826 -20.22205 -18.73465 -16.95245 -16.63336 -15.79900 -15.60981 -14.92221 -14.80484 -14.36927 -13.99801 -13.58451 -13.51011 -13.44794 -13.21819 -12.94429 -12.47033 -12.32527 -12.09110 -11.82704 -11.59932 -11.25786 -11.17058 -10.90898 -10.87508 -10.81301 -10.72799 -10.66478 -10.63253 -10.56089 -10.33376 -9.93709 -9.91278 -9.46861 -8.64577 -8.54507 -6.80937 -5.75341 -3.20217 2.89673 3.38184 3.45157 3.47408 3.51337 4.30493 4.38579 4.49750 4.56831 5.01675 5.09093 5.15943 5.19438 5.22618 5.30518 5.39223 5.45034 5.53595 5.63887 5.65629 5.73189 5.74112 5.82816 5.83144 5.91172 5.95197 5.97557 6.09628 6.14372 6.24189 6.26458 6.32143 6.64065 6.67632 6.77616 6.93068 7.35902 7.67979 7.80558 7.83223 8.36368 8.54315 9.20877 9.84066 10.31748 11.30535 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035293 B = 0.003735 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.156891 B = 7495.398999 C = 7892.453880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.598 5.598 3 C -0.259 4.259 4 H 0.070 0.930 5 C 0.003 3.997 6 N -0.905 5.905 7 Si 0.904 3.096 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.144 3.856 12 C 0.095 3.905 13 N -0.725 5.725 14 C 0.520 3.480 15 O -0.544 6.544 16 C -0.108 4.108 17 H 0.092 0.908 18 C -0.108 4.108 19 C -0.124 4.124 20 C -0.114 4.114 21 C -0.053 4.053 22 C -0.147 4.147 23 C -0.143 4.143 24 H 0.029 0.971 25 H 0.045 0.955 26 H -0.002 1.002 27 H 0.252 0.748 28 H 0.040 0.960 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.395 0.605 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.121 -19.987 -5.622 21.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.320 5.320 3 C -0.388 4.388 4 H 0.087 0.913 5 C -0.195 4.195 6 N -0.550 5.550 7 Si 0.734 3.266 8 H -0.202 1.202 9 H -0.215 1.215 10 H -0.217 1.217 11 C 0.016 3.984 12 C -0.031 4.031 13 N -0.376 5.376 14 C 0.306 3.694 15 O -0.422 6.422 16 C -0.130 4.130 17 H 0.110 0.890 18 C -0.146 4.146 19 C -0.161 4.161 20 C -0.152 4.152 21 C -0.054 4.054 22 C -0.205 4.205 23 C -0.200 4.200 24 H 0.047 0.953 25 H 0.064 0.936 26 H 0.017 0.983 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.228 0.772 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.752 -19.421 -6.283 21.500 hybrid contribution 0.388 0.843 0.317 0.980 sum 7.140 -18.578 -5.966 20.778 Atomic orbital electron populations 1.20811 0.82339 0.95960 0.99184 1.43801 1.01939 1.00367 1.85926 1.19240 0.97597 0.85180 1.36798 0.91256 1.24977 0.97966 0.98488 0.98118 1.70103 1.20117 1.26984 1.37814 0.86195 0.78548 0.84219 0.77659 1.20246 1.21524 1.21717 1.20831 0.96633 0.89099 0.91885 1.22375 0.95597 0.83279 1.01844 1.46159 1.58319 1.25043 1.08066 1.20345 0.79359 0.85763 0.83936 1.90675 1.55051 1.65059 1.31388 1.22313 0.97538 0.92562 1.00573 0.88983 1.22429 1.00007 0.95602 0.96567 1.22361 0.97435 0.95457 1.00868 1.22280 0.96897 0.97346 0.98675 1.21053 0.95055 0.93383 0.95897 1.22034 0.95125 1.01119 1.02176 1.21979 1.01786 1.01230 0.94995 0.95267 0.93619 0.98308 0.93753 0.94195 0.93030 0.91695 0.92412 0.77204 0.89725 0.91434 0.91683 0.91508 0.91571 0.91497 0.92620 0.92349 0.91587 0.92372 0.92344 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.02 8.99 59.85 0.54 4.56 16 2 N -0.60 -15.09 2.92 -181.11 -0.53 -15.62 16 3 C -0.26 -7.17 9.65 -15.06 -0.15 -7.32 16 4 H 0.07 1.89 7.88 -52.49 -0.41 1.48 16 5 C 0.00 0.08 5.03 -17.43 -0.09 -0.01 16 6 N -0.91 -26.54 10.79 55.49 0.60 -25.94 16 7 Si 0.90 22.08 29.58 -169.99 -5.03 17.05 16 8 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 9 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 C 0.14 2.87 5.77 -4.04 -0.02 2.85 16 12 C 0.09 1.76 6.00 -4.04 -0.02 1.74 16 13 N -0.73 -10.57 5.56 -60.29 -0.33 -10.91 16 14 C 0.52 7.79 4.99 -10.99 -0.05 7.73 16 15 O -0.54 -10.37 15.06 5.56 0.08 -10.29 16 16 C -0.11 -1.19 2.71 -90.11 -0.24 -1.43 16 17 H 0.09 0.86 7.85 -51.93 -0.41 0.45 16 18 C -0.11 -1.15 6.16 -24.70 -0.15 -1.31 16 19 C -0.12 -1.01 6.84 -25.03 -0.17 -1.19 16 20 C -0.11 -0.95 6.11 -25.61 -0.16 -1.10 16 21 C -0.05 -0.51 0.86 -153.39 -0.13 -0.65 16 22 C -0.15 -1.69 7.14 37.16 0.27 -1.42 16 23 C -0.14 -1.16 8.16 37.16 0.30 -0.85 16 24 H 0.03 0.77 7.48 -51.93 -0.39 0.38 16 25 H 0.05 1.22 7.18 -51.93 -0.37 0.85 16 26 H 0.00 -0.04 8.05 -51.93 -0.42 -0.45 16 27 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 29 H 0.05 1.01 8.04 -51.92 -0.42 0.59 16 30 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.39 4.60 8.47 -40.82 -0.35 4.26 16 33 H 0.08 1.08 7.25 -51.93 -0.38 0.70 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.47 7.67 -51.93 -0.40 0.07 16 38 H 0.07 0.56 7.67 -51.93 -0.40 0.16 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.76 7.35 -51.93 -0.38 0.38 16 41 H 0.07 0.88 7.45 -51.93 -0.39 0.49 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 345.63 15.07 5.21 5.21 Total: -1.00 -31.63 345.63 -8.15 -39.78 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -8.06 Total: -0.88 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -0.08 Total: 1.60 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -0.27 Total: -52.48 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.08 Total: -10.29 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.63 -8.15 -39.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492376309.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.057 kcal (2) G-P(sol) polarization free energy of solvation -31.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds