Wall clock time and date at job start Mon Mar 30 2020 01:36:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46503 * 1
3 3 C 1.36939 * 119.99807 * 2 1
4 4 H 1.07998 * 119.99862 * 201.55485 * 3 2 1
5 5 C 1.38815 * 120.00203 * 21.54689 * 3 2 1
6 6 N 1.31621 * 119.99508 * 15.60911 * 5 3 2
7 7 Si 1.86797 * 120.00188 * 195.60419 * 5 3 2
8 8 H 1.48502 * 109.47126 * 0.02562 * 7 5 3
9 9 H 1.48493 * 109.47085 * 120.00265 * 7 5 3
10 10 H 1.48501 * 109.47097 * 240.00630 * 7 5 3
11 11 C 1.46492 * 120.00083 * 180.02562 * 2 1 3
12 12 C 1.53006 * 109.47294 * 89.99658 * 11 2 1
13 13 N 1.46505 * 109.47161 * 179.97438 * 12 11 2
14 14 C 1.34768 * 119.99785 * 180.02562 * 13 12 11
15 15 O 1.21282 * 120.00515 * 0.02562 * 14 13 12
16 16 C 1.50702 * 119.99964 * 179.97438 * 14 13 12
17 17 H 1.09003 * 110.53807 * 324.93284 * 16 14 13
18 18 C 1.54885 * 110.48858 * 202.31300 * 16 14 13
19 19 C 1.54971 * 102.78038 * 203.40742 * 18 16 14
20 20 C 1.54269 * 104.15770 * 37.88758 * 19 18 16
21 21 C 1.53872 * 106.64053 * 336.44650 * 20 19 18
22 22 C 1.52997 * 110.02991 * 119.25844 * 21 20 19
23 23 C 1.52998 * 110.03622 * 240.63945 * 21 20 19
24 24 H 1.08997 * 109.46562 * 273.16396 * 1 2 3
25 25 H 1.09004 * 109.46995 * 33.16087 * 1 2 3
26 26 H 1.09004 * 109.47098 * 153.16240 * 1 2 3
27 27 H 0.96995 * 119.99425 * 179.97438 * 6 5 3
28 28 H 1.09000 * 109.47319 * 329.99579 * 11 2 1
29 29 H 1.09007 * 109.47150 * 209.99353 * 11 2 1
30 30 H 1.09001 * 109.46769 * 60.00222 * 12 11 2
31 31 H 1.08996 * 109.47207 * 300.00063 * 12 11 2
32 32 H 0.97000 * 119.99864 * 0.02562 * 13 12 11
33 33 H 1.08998 * 110.75941 * 321.69899 * 18 16 14
34 34 H 1.09007 * 110.75620 * 85.06945 * 18 16 14
35 35 H 1.09003 * 110.47629 * 279.24034 * 19 18 16
36 36 H 1.08992 * 110.53105 * 156.56964 * 19 18 16
37 37 H 1.09003 * 110.03173 * 217.13796 * 20 19 18
38 38 H 1.09001 * 110.03236 * 95.75787 * 20 19 18
39 39 H 1.08998 * 109.47346 * 56.36445 * 22 21 20
40 40 H 1.09004 * 109.47212 * 176.36312 * 22 21 20
41 41 H 1.08994 * 109.47592 * 296.36271 * 22 21 20
42 42 H 1.09005 * 109.46723 * 58.54592 * 23 21 20
43 43 H 1.09001 * 109.47491 * 178.54775 * 23 21 20
44 44 H 1.09001 * 109.47064 * 298.55304 * 23 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1497 1.1860 0.0000
4 1 3.1730 1.2187 -0.3436
5 6 1.5284 2.3461 0.4415
6 7 0.4138 2.2716 1.1377
7 14 2.2741 4.0129 0.0477
8 1 3.5177 3.8248 -0.7418
9 1 1.3045 4.8152 -0.7405
10 1 2.5927 4.7238 1.3120
11 6 2.1975 -1.2686 -0.0006
12 6 2.4525 -1.7098 -1.4433
13 7 3.1856 -2.9782 -1.4438
14 6 3.5230 -3.5610 -2.6112
15 8 3.2202 -3.0352 -3.6614
16 6 4.2775 -4.8655 -2.6118
17 1 4.9767 -4.9032 -1.7764
18 6 5.0258 -5.0583 -3.9541
19 6 5.2016 -6.5961 -4.0308
20 6 3.8857 -7.1556 -3.4518
21 6 3.2981 -6.0558 -2.5503
22 6 1.9235 -5.6307 -3.0705
23 6 3.1795 -6.5645 -1.1123
24 1 -0.3632 0.0567 1.0261
25 1 -0.3633 0.8603 -0.5621
26 1 -0.3633 -0.9170 -0.4640
27 1 -0.0201 3.0823 1.4465
28 1 1.6085 -2.0285 0.5130
29 1 3.1500 -1.1385 0.5133
30 1 3.0416 -0.9499 -1.9568
31 1 1.5001 -1.8399 -1.9572
32 1 3.4280 -3.3986 -0.6040
33 1 4.4235 -4.6970 -4.7876
34 1 5.9947 -4.5593 -3.9315
35 1 6.0503 -6.9135 -3.4249
36 1 5.3295 -6.9151 -5.0651
37 1 4.0873 -8.0516 -2.8647
38 1 3.1912 -7.3872 -4.2594
39 1 1.2724 -6.5028 -3.1313
40 1 1.4879 -4.8989 -2.3901
41 1 2.0306 -5.1876 -4.0605
42 1 4.1629 -6.8658 -0.7513
43 1 2.7868 -5.7705 -0.4772
44 1 2.5044 -7.4199 -1.0840
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001492376309.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:36:00
Heat of formation + Delta-G solvation = -59.427254 kcal
Electronic energy + Delta-G solvation = -21268.699227 eV
Core-core repulsion = 18219.825772 eV
Total energy + Delta-G solvation = -3048.873455 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.189 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-41.51842 -38.92110 -37.77426 -35.69785 -33.36447 -33.04981 -30.85962 -29.22180
-28.22941 -27.93228 -25.85741 -24.87275 -22.49903 -22.25573 -21.16894 -19.75011
-18.75301 -17.94296 -17.18394 -16.74549 -16.52918 -16.07400 -15.54928 -15.47261
-15.09216 -14.63175 -14.57748 -14.24142 -14.21062 -14.11740 -13.68888 -13.09740
-12.93959 -12.82308 -12.74755 -12.67073 -12.51401 -12.35866 -12.18029 -11.98375
-11.94327 -11.80757 -11.64338 -11.49862 -11.41756 -11.30580 -10.77989 -10.63212
-10.03345 -8.87186 -7.88270 -5.35435 1.43964 1.46646 1.56650 1.69857
2.21994 2.52202 3.26402 3.49914 3.57980 3.69313 3.83000 4.13523
4.20551 4.28232 4.35703 4.39933 4.42990 4.48857 4.53007 4.64571
4.72529 4.77720 4.78954 4.92050 5.02004 5.03545 5.04637 5.10967
5.13468 5.18871 5.24425 5.30204 5.35563 5.41025 5.46452 5.53190
5.55783 5.59277 5.65884 6.28227 6.64950 7.10219 7.34551 7.81157
8.23774 9.16192
Molecular weight = 268.19amu
Principal moments of inertia in cm(-1)
A = 0.035293 B = 0.003735 C = 0.003547
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 793.156891 B = 7495.398999 C = 7892.453880
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.175 3.825
2 N -0.617 5.617
3 C -0.268 4.268
4 H 0.070 0.930
5 C -0.050 4.050
6 N -0.935 5.935
7 Si 0.966 3.034
8 H -0.269 1.269
9 H -0.291 1.291
10 H -0.287 1.287
11 C 0.148 3.852
12 C 0.117 3.883
13 N -0.714 5.714
14 C 0.518 3.482
15 O -0.590 6.590
16 C -0.103 4.103
17 H 0.119 0.881
18 C -0.113 4.113
19 C -0.116 4.116
20 C -0.112 4.112
21 C -0.050 4.050
22 C -0.145 4.145
23 C -0.141 4.141
24 H 0.009 0.991
25 H 0.016 0.984
26 H 0.029 0.971
27 H 0.250 0.750
28 H 0.064 0.936
29 H 0.059 0.941
30 H 0.035 0.965
31 H 0.039 0.961
32 H 0.413 0.587
33 H 0.055 0.945
34 H 0.071 0.929
35 H 0.084 0.916
36 H 0.072 0.928
37 H 0.088 0.912
38 H 0.062 0.938
39 H 0.071 0.929
40 H 0.038 0.962
41 H 0.039 0.961
42 H 0.077 0.923
43 H 0.052 0.948
44 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.767 -22.218 -5.081 24.419
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 N -0.340 5.340
3 C -0.398 4.398
4 H 0.087 0.913
5 C -0.245 4.245
6 N -0.581 5.581
7 Si 0.795 3.205
8 H -0.194 1.194
9 H -0.218 1.218
10 H -0.214 1.214
11 C 0.021 3.979
12 C -0.010 4.010
13 N -0.366 5.366
14 C 0.306 3.694
15 O -0.471 6.471
16 C -0.124 4.124
17 H 0.137 0.863
18 C -0.151 4.151
19 C -0.153 4.153
20 C -0.150 4.150
21 C -0.051 4.051
22 C -0.202 4.202
23 C -0.198 4.198
24 H 0.027 0.973
25 H 0.035 0.965
26 H 0.048 0.952
27 H 0.059 0.941
28 H 0.082 0.918
29 H 0.077 0.923
30 H 0.053 0.947
31 H 0.058 0.942
32 H 0.249 0.751
33 H 0.073 0.927
34 H 0.089 0.911
35 H 0.103 0.897
36 H 0.091 0.909
37 H 0.106 0.894
38 H 0.081 0.919
39 H 0.090 0.910
40 H 0.057 0.943
41 H 0.058 0.942
42 H 0.096 0.904
43 H 0.071 0.929
44 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges 8.431 -21.703 -5.726 23.977
hybrid contribution -0.131 1.479 0.101 1.488
sum 8.301 -20.224 -5.625 22.574
Atomic orbital electron populations
1.20568 0.82568 0.96146 0.97718 1.44040 1.02245 1.01597 1.86105
1.19529 0.97759 0.86494 1.36030 0.91268 1.25724 0.98672 1.01692
0.98418 1.70238 1.21410 1.27492 1.38980 0.85220 0.77887 0.80093
0.77338 1.19379 1.21833 1.21416 1.20937 0.96788 0.87574 0.92609
1.21790 0.94642 0.84359 1.00198 1.45963 1.57731 1.23666 1.09216
1.21135 0.78626 0.86678 0.82956 1.90660 1.56822 1.66517 1.33071
1.22411 0.97845 0.90376 1.01804 0.86263 1.22443 0.99515 0.97829
0.95312 1.22347 0.98132 0.93021 1.01810 1.22285 0.96656 0.97470
0.98545 1.21086 0.93318 0.93166 0.97524 1.22006 0.96927 1.01063
1.00228 1.21983 1.03173 1.01332 0.93322 0.97253 0.96507 0.95233
0.94113 0.91764 0.92303 0.94683 0.94208 0.75062 0.92667 0.91064
0.89695 0.90900 0.89353 0.91907 0.91025 0.94310 0.94229 0.90445
0.92857 0.91434
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.17 8.78 8.99 127.77 1.15 9.93 16
2 N -0.62 -31.18 2.92 -726.92 -2.13 -33.31 16
3 C -0.27 -14.93 9.65 84.03 0.81 -14.12 16
4 H 0.07 3.77 7.88 -2.91 -0.02 3.75 16
5 C -0.05 -2.82 5.03 84.86 0.43 -2.39 16
6 N -0.93 -55.65 10.79 21.65 0.23 -55.41 16
7 Si 0.97 45.76 29.58 68.60 2.03 47.79 16
8 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16
9 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16
10 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16
11 C 0.15 5.74 5.77 86.38 0.50 6.24 16
12 C 0.12 4.35 6.00 86.38 0.52 4.87 16
13 N -0.71 -20.10 5.56 -463.05 -2.57 -22.67 16
14 C 0.52 15.31 4.99 87.66 0.44 15.75 16
15 O -0.59 -23.20 15.06 -3.04 -0.05 -23.25 16
16 C -0.10 -2.07 2.71 -10.46 -0.03 -2.09 16
17 H 0.12 1.78 7.85 -2.39 -0.02 1.76 16
18 C -0.11 -2.27 6.16 31.91 0.20 -2.07 16
19 C -0.12 -1.56 6.84 31.70 0.22 -1.34 16
20 C -0.11 -1.51 6.11 31.32 0.19 -1.32 16
21 C -0.05 -0.85 0.86 -51.46 -0.04 -0.89 16
22 C -0.14 -3.23 7.14 71.98 0.51 -2.72 16
23 C -0.14 -1.77 8.16 71.98 0.59 -1.19 16
24 H 0.01 0.50 7.48 -2.39 -0.02 0.48 16
25 H 0.02 0.90 7.18 -2.38 -0.02 0.88 16
26 H 0.03 1.26 8.05 -2.38 -0.02 1.24 16
27 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16
28 H 0.06 2.20 8.07 -2.39 -0.02 2.18 16
29 H 0.06 2.21 8.04 -2.38 -0.02 2.19 16
30 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16
31 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16
32 H 0.41 8.67 8.47 -92.71 -0.79 7.88 16
33 H 0.05 1.44 7.25 -2.39 -0.02 1.42 16
34 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16
35 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16
36 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16
37 H 0.09 0.85 7.67 -2.39 -0.02 0.83 16
38 H 0.06 0.91 7.67 -2.39 -0.02 0.89 16
39 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16
40 H 0.04 0.99 7.35 -2.39 -0.02 0.98 16
41 H 0.04 1.08 7.45 -2.39 -0.02 1.06 16
42 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16
43 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16
44 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16
Total: -1.00 -69.99 345.63 3.16 -66.83
By element:
Atomic # 1 Polarization: 11.20 SS G_CDS: 0.17 Total: 11.37 kcal
Atomic # 6 Polarization: 3.18 SS G_CDS: 5.47 Total: 8.65 kcal
Atomic # 7 Polarization: -106.93 SS G_CDS: -4.46 Total: -111.39 kcal
Atomic # 8 Polarization: -23.20 SS G_CDS: -0.05 Total: -23.25 kcal
Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal
Total: -69.99 3.16 -66.83 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001492376309.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.401 kcal
(2) G-P(sol) polarization free energy of solvation -69.986 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.585 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.158 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.828 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.427 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds