Wall clock time and date at job start Mon Mar 30 2020 01:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36939 * 119.99807 * 2 1 4 4 H 1.07998 * 119.99862 * 201.55485 * 3 2 1 5 5 C 1.38815 * 120.00203 * 21.54689 * 3 2 1 6 6 N 1.31621 * 119.99508 * 15.60911 * 5 3 2 7 7 Si 1.86797 * 120.00188 * 195.60419 * 5 3 2 8 8 H 1.48502 * 109.47126 * 0.02562 * 7 5 3 9 9 H 1.48493 * 109.47085 * 120.00265 * 7 5 3 10 10 H 1.48501 * 109.47097 * 240.00630 * 7 5 3 11 11 C 1.46492 * 120.00083 * 180.02562 * 2 1 3 12 12 C 1.53006 * 109.47294 * 89.99658 * 11 2 1 13 13 N 1.46505 * 109.47161 * 179.97438 * 12 11 2 14 14 C 1.34768 * 119.99785 * 180.02562 * 13 12 11 15 15 O 1.21282 * 120.00515 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.99964 * 179.97438 * 14 13 12 17 17 H 1.09003 * 110.53807 * 324.93284 * 16 14 13 18 18 C 1.54885 * 110.48858 * 202.31300 * 16 14 13 19 19 C 1.54971 * 102.78038 * 203.40742 * 18 16 14 20 20 C 1.54269 * 104.15770 * 37.88758 * 19 18 16 21 21 C 1.53872 * 106.64053 * 336.44650 * 20 19 18 22 22 C 1.52997 * 110.02991 * 119.25844 * 21 20 19 23 23 C 1.52998 * 110.03622 * 240.63945 * 21 20 19 24 24 H 1.08997 * 109.46562 * 273.16396 * 1 2 3 25 25 H 1.09004 * 109.46995 * 33.16087 * 1 2 3 26 26 H 1.09004 * 109.47098 * 153.16240 * 1 2 3 27 27 H 0.96995 * 119.99425 * 179.97438 * 6 5 3 28 28 H 1.09000 * 109.47319 * 329.99579 * 11 2 1 29 29 H 1.09007 * 109.47150 * 209.99353 * 11 2 1 30 30 H 1.09001 * 109.46769 * 60.00222 * 12 11 2 31 31 H 1.08996 * 109.47207 * 300.00063 * 12 11 2 32 32 H 0.97000 * 119.99864 * 0.02562 * 13 12 11 33 33 H 1.08998 * 110.75941 * 321.69899 * 18 16 14 34 34 H 1.09007 * 110.75620 * 85.06945 * 18 16 14 35 35 H 1.09003 * 110.47629 * 279.24034 * 19 18 16 36 36 H 1.08992 * 110.53105 * 156.56964 * 19 18 16 37 37 H 1.09003 * 110.03173 * 217.13796 * 20 19 18 38 38 H 1.09001 * 110.03236 * 95.75787 * 20 19 18 39 39 H 1.08998 * 109.47346 * 56.36445 * 22 21 20 40 40 H 1.09004 * 109.47212 * 176.36312 * 22 21 20 41 41 H 1.08994 * 109.47592 * 296.36271 * 22 21 20 42 42 H 1.09005 * 109.46723 * 58.54592 * 23 21 20 43 43 H 1.09001 * 109.47491 * 178.54775 * 23 21 20 44 44 H 1.09001 * 109.47064 * 298.55304 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1730 1.2187 -0.3436 5 6 1.5284 2.3461 0.4415 6 7 0.4138 2.2716 1.1377 7 14 2.2741 4.0129 0.0477 8 1 3.5177 3.8248 -0.7418 9 1 1.3045 4.8152 -0.7405 10 1 2.5927 4.7238 1.3120 11 6 2.1975 -1.2686 -0.0006 12 6 2.4525 -1.7098 -1.4433 13 7 3.1856 -2.9782 -1.4438 14 6 3.5230 -3.5610 -2.6112 15 8 3.2202 -3.0352 -3.6614 16 6 4.2775 -4.8655 -2.6118 17 1 4.9767 -4.9032 -1.7764 18 6 5.0258 -5.0583 -3.9541 19 6 5.2016 -6.5961 -4.0308 20 6 3.8857 -7.1556 -3.4518 21 6 3.2981 -6.0558 -2.5503 22 6 1.9235 -5.6307 -3.0705 23 6 3.1795 -6.5645 -1.1123 24 1 -0.3632 0.0567 1.0261 25 1 -0.3633 0.8603 -0.5621 26 1 -0.3633 -0.9170 -0.4640 27 1 -0.0201 3.0823 1.4465 28 1 1.6085 -2.0285 0.5130 29 1 3.1500 -1.1385 0.5133 30 1 3.0416 -0.9499 -1.9568 31 1 1.5001 -1.8399 -1.9572 32 1 3.4280 -3.3986 -0.6040 33 1 4.4235 -4.6970 -4.7876 34 1 5.9947 -4.5593 -3.9315 35 1 6.0503 -6.9135 -3.4249 36 1 5.3295 -6.9151 -5.0651 37 1 4.0873 -8.0516 -2.8647 38 1 3.1912 -7.3872 -4.2594 39 1 1.2724 -6.5028 -3.1313 40 1 1.4879 -4.8989 -2.3901 41 1 2.0306 -5.1876 -4.0605 42 1 4.1629 -6.8658 -0.7513 43 1 2.7868 -5.7705 -0.4772 44 1 2.5044 -7.4199 -1.0840 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001492376309.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:00 Heat of formation + Delta-G solvation = -59.427254 kcal Electronic energy + Delta-G solvation = -21268.699227 eV Core-core repulsion = 18219.825772 eV Total energy + Delta-G solvation = -3048.873455 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.51842 -38.92110 -37.77426 -35.69785 -33.36447 -33.04981 -30.85962 -29.22180 -28.22941 -27.93228 -25.85741 -24.87275 -22.49903 -22.25573 -21.16894 -19.75011 -18.75301 -17.94296 -17.18394 -16.74549 -16.52918 -16.07400 -15.54928 -15.47261 -15.09216 -14.63175 -14.57748 -14.24142 -14.21062 -14.11740 -13.68888 -13.09740 -12.93959 -12.82308 -12.74755 -12.67073 -12.51401 -12.35866 -12.18029 -11.98375 -11.94327 -11.80757 -11.64338 -11.49862 -11.41756 -11.30580 -10.77989 -10.63212 -10.03345 -8.87186 -7.88270 -5.35435 1.43964 1.46646 1.56650 1.69857 2.21994 2.52202 3.26402 3.49914 3.57980 3.69313 3.83000 4.13523 4.20551 4.28232 4.35703 4.39933 4.42990 4.48857 4.53007 4.64571 4.72529 4.77720 4.78954 4.92050 5.02004 5.03545 5.04637 5.10967 5.13468 5.18871 5.24425 5.30204 5.35563 5.41025 5.46452 5.53190 5.55783 5.59277 5.65884 6.28227 6.64950 7.10219 7.34551 7.81157 8.23774 9.16192 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035293 B = 0.003735 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.156891 B = 7495.398999 C = 7892.453880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.617 5.617 3 C -0.268 4.268 4 H 0.070 0.930 5 C -0.050 4.050 6 N -0.935 5.935 7 Si 0.966 3.034 8 H -0.269 1.269 9 H -0.291 1.291 10 H -0.287 1.287 11 C 0.148 3.852 12 C 0.117 3.883 13 N -0.714 5.714 14 C 0.518 3.482 15 O -0.590 6.590 16 C -0.103 4.103 17 H 0.119 0.881 18 C -0.113 4.113 19 C -0.116 4.116 20 C -0.112 4.112 21 C -0.050 4.050 22 C -0.145 4.145 23 C -0.141 4.141 24 H 0.009 0.991 25 H 0.016 0.984 26 H 0.029 0.971 27 H 0.250 0.750 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.035 0.965 31 H 0.039 0.961 32 H 0.413 0.587 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.038 0.962 41 H 0.039 0.961 42 H 0.077 0.923 43 H 0.052 0.948 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.767 -22.218 -5.081 24.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.340 5.340 3 C -0.398 4.398 4 H 0.087 0.913 5 C -0.245 4.245 6 N -0.581 5.581 7 Si 0.795 3.205 8 H -0.194 1.194 9 H -0.218 1.218 10 H -0.214 1.214 11 C 0.021 3.979 12 C -0.010 4.010 13 N -0.366 5.366 14 C 0.306 3.694 15 O -0.471 6.471 16 C -0.124 4.124 17 H 0.137 0.863 18 C -0.151 4.151 19 C -0.153 4.153 20 C -0.150 4.150 21 C -0.051 4.051 22 C -0.202 4.202 23 C -0.198 4.198 24 H 0.027 0.973 25 H 0.035 0.965 26 H 0.048 0.952 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.249 0.751 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.096 0.904 43 H 0.071 0.929 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.431 -21.703 -5.726 23.977 hybrid contribution -0.131 1.479 0.101 1.488 sum 8.301 -20.224 -5.625 22.574 Atomic orbital electron populations 1.20568 0.82568 0.96146 0.97718 1.44040 1.02245 1.01597 1.86105 1.19529 0.97759 0.86494 1.36030 0.91268 1.25724 0.98672 1.01692 0.98418 1.70238 1.21410 1.27492 1.38980 0.85220 0.77887 0.80093 0.77338 1.19379 1.21833 1.21416 1.20937 0.96788 0.87574 0.92609 1.21790 0.94642 0.84359 1.00198 1.45963 1.57731 1.23666 1.09216 1.21135 0.78626 0.86678 0.82956 1.90660 1.56822 1.66517 1.33071 1.22411 0.97845 0.90376 1.01804 0.86263 1.22443 0.99515 0.97829 0.95312 1.22347 0.98132 0.93021 1.01810 1.22285 0.96656 0.97470 0.98545 1.21086 0.93318 0.93166 0.97524 1.22006 0.96927 1.01063 1.00228 1.21983 1.03173 1.01332 0.93322 0.97253 0.96507 0.95233 0.94113 0.91764 0.92303 0.94683 0.94208 0.75062 0.92667 0.91064 0.89695 0.90900 0.89353 0.91907 0.91025 0.94310 0.94229 0.90445 0.92857 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.78 8.99 127.77 1.15 9.93 16 2 N -0.62 -31.18 2.92 -726.92 -2.13 -33.31 16 3 C -0.27 -14.93 9.65 84.03 0.81 -14.12 16 4 H 0.07 3.77 7.88 -2.91 -0.02 3.75 16 5 C -0.05 -2.82 5.03 84.86 0.43 -2.39 16 6 N -0.93 -55.65 10.79 21.65 0.23 -55.41 16 7 Si 0.97 45.76 29.58 68.60 2.03 47.79 16 8 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 9 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 10 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 11 C 0.15 5.74 5.77 86.38 0.50 6.24 16 12 C 0.12 4.35 6.00 86.38 0.52 4.87 16 13 N -0.71 -20.10 5.56 -463.05 -2.57 -22.67 16 14 C 0.52 15.31 4.99 87.66 0.44 15.75 16 15 O -0.59 -23.20 15.06 -3.04 -0.05 -23.25 16 16 C -0.10 -2.07 2.71 -10.46 -0.03 -2.09 16 17 H 0.12 1.78 7.85 -2.39 -0.02 1.76 16 18 C -0.11 -2.27 6.16 31.91 0.20 -2.07 16 19 C -0.12 -1.56 6.84 31.70 0.22 -1.34 16 20 C -0.11 -1.51 6.11 31.32 0.19 -1.32 16 21 C -0.05 -0.85 0.86 -51.46 -0.04 -0.89 16 22 C -0.14 -3.23 7.14 71.98 0.51 -2.72 16 23 C -0.14 -1.77 8.16 71.98 0.59 -1.19 16 24 H 0.01 0.50 7.48 -2.39 -0.02 0.48 16 25 H 0.02 0.90 7.18 -2.38 -0.02 0.88 16 26 H 0.03 1.26 8.05 -2.38 -0.02 1.24 16 27 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 28 H 0.06 2.20 8.07 -2.39 -0.02 2.18 16 29 H 0.06 2.21 8.04 -2.38 -0.02 2.19 16 30 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.41 8.67 8.47 -92.71 -0.79 7.88 16 33 H 0.05 1.44 7.25 -2.39 -0.02 1.42 16 34 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.09 0.85 7.67 -2.39 -0.02 0.83 16 38 H 0.06 0.91 7.67 -2.39 -0.02 0.89 16 39 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.04 0.99 7.35 -2.39 -0.02 0.98 16 41 H 0.04 1.08 7.45 -2.39 -0.02 1.06 16 42 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 43 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -69.99 345.63 3.16 -66.83 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 0.17 Total: 11.37 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 5.47 Total: 8.65 kcal Atomic # 7 Polarization: -106.93 SS G_CDS: -4.46 Total: -111.39 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.05 Total: -23.25 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -69.99 3.16 -66.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492376309.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.401 kcal (2) G-P(sol) polarization free energy of solvation -69.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds