Wall clock time and date at job start Mon Mar 30 2020 01:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46502 * 119.99712 * 2 1 4 4 C 1.52994 * 109.46957 * 269.99810 * 3 2 1 5 5 N 1.46496 * 109.47256 * 180.02562 * 4 3 2 6 6 C 1.36937 * 120.00498 * 179.72320 * 5 4 3 7 7 H 1.08004 * 119.99670 * 0.28088 * 6 5 4 8 8 C 1.38807 * 120.00288 * 180.27195 * 6 5 4 9 9 N 1.31621 * 120.00056 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00104 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47099 * 90.00241 * 10 8 6 12 12 H 1.48505 * 109.47428 * 210.00067 * 10 8 6 13 13 H 1.48504 * 109.47300 * 329.99972 * 10 8 6 14 14 C 1.34777 * 119.99767 * 179.97438 * 2 1 3 15 15 O 1.21279 * 119.99560 * 180.02562 * 14 2 1 16 16 C 1.50698 * 120.00194 * 0.02562 * 14 2 1 17 17 H 1.08999 * 110.01608 * 23.38408 * 16 14 2 18 18 C 1.54265 * 110.03206 * 144.77867 * 16 14 2 19 19 C 1.54890 * 104.19903 * 142.89545 * 18 16 14 20 20 C 1.54889 * 102.74366 * 322.05731 * 19 18 16 21 21 C 1.53878 * 110.02994 * 261.94093 * 16 14 2 22 22 C 1.52998 * 110.03289 * 0.02562 * 21 16 14 23 23 C 1.53006 * 110.02910 * 121.43465 * 21 16 14 24 24 H 1.09002 * 109.46815 * 90.00114 * 1 2 3 25 25 H 1.09004 * 109.47017 * 210.00039 * 1 2 3 26 26 H 1.08995 * 109.47289 * 330.00308 * 1 2 3 27 27 H 1.09000 * 109.46785 * 150.00002 * 3 2 1 28 28 H 1.08999 * 109.47278 * 29.99926 * 3 2 1 29 29 H 1.09006 * 109.47478 * 60.00076 * 4 3 2 30 30 H 1.09005 * 109.47469 * 300.00505 * 4 3 2 31 31 H 0.97001 * 119.99618 * 0.02562 * 5 4 3 32 32 H 0.97001 * 119.99834 * 179.97438 * 9 8 6 33 33 H 1.09007 * 110.48458 * 261.57533 * 18 16 14 34 34 H 1.09000 * 110.48855 * 24.07488 * 18 16 14 35 35 H 1.08999 * 110.75585 * 80.36413 * 19 18 16 36 36 H 1.08991 * 110.75729 * 203.55760 * 19 18 16 37 37 H 1.08999 * 110.48833 * 156.62725 * 20 19 18 38 38 H 1.09005 * 110.48600 * 279.26100 * 20 19 18 39 39 H 1.08995 * 109.47291 * 57.49946 * 22 21 16 40 40 H 1.09005 * 109.46949 * 177.49618 * 22 21 16 41 41 H 1.08997 * 109.46936 * 297.49445 * 22 21 16 42 42 H 1.08992 * 109.47412 * 59.99289 * 23 21 16 43 43 H 1.08998 * 109.47090 * 180.02562 * 23 21 16 44 44 H 1.09004 * 109.46535 * 299.99778 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1854 2.9788 -1.4425 6 6 3.5328 3.5689 -2.6284 7 1 3.2625 3.1014 -3.5637 8 6 4.2323 4.7679 -2.6284 9 7 4.5620 5.3374 -1.4885 10 14 4.7055 5.5731 -4.2461 11 1 3.6217 6.4920 -4.6774 12 1 5.9638 6.3414 -4.0673 13 1 4.9075 4.5262 -5.2798 14 6 2.1389 -1.1672 0.0005 15 8 3.3517 -1.1672 0.0010 16 6 1.3854 -2.4723 0.0005 17 1 0.3849 -2.3255 -0.4064 18 6 2.1468 -3.5221 -0.8348 19 6 1.9337 -4.8485 -0.0639 20 6 2.0074 -4.3989 1.4165 21 6 1.2968 -3.0298 1.4320 22 6 2.0009 -2.0842 2.4072 23 6 -0.1684 -3.2044 1.8367 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 3.1499 1.1384 0.5138 28 1 1.6084 2.0284 0.5138 29 1 1.5000 1.8407 -1.9564 30 1 3.0415 0.9507 -1.9564 31 1 3.4285 3.3985 -0.6025 32 1 5.0511 6.1751 -1.4886 33 1 1.7244 -3.5914 -1.8373 34 1 3.2070 -3.2738 -0.8851 35 1 0.9559 -5.2739 -0.2900 36 1 2.7259 -5.5608 -0.2941 37 1 1.4833 -5.1081 2.0572 38 1 3.0455 -4.2935 1.7319 39 1 1.5512 -1.0935 2.3414 40 1 1.8944 -2.4647 3.4231 41 1 3.0587 -2.0208 2.1520 42 1 -0.6545 -3.8984 1.1511 43 1 -0.2205 -3.5989 2.8514 44 1 -0.6740 -2.2395 1.7960 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493657141.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:53 Heat of formation + Delta-G solvation = -38.476975 kcal Electronic energy + Delta-G solvation = -21526.855484 eV Core-core repulsion = 18478.890501 eV Total energy + Delta-G solvation = -3047.964983 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.76517 -37.96158 -35.78574 -34.30380 -32.39065 -31.45766 -29.68020 -27.96348 -27.57104 -26.27693 -24.87110 -23.61078 -21.74598 -20.91266 -19.85128 -18.07544 -17.22591 -16.95737 -15.94727 -15.74576 -15.15355 -14.68341 -14.40827 -13.79534 -13.67434 -13.57983 -13.30733 -13.18655 -12.97745 -12.94272 -12.73118 -12.39131 -11.98413 -11.83139 -11.52351 -11.25806 -11.16013 -10.97515 -10.87979 -10.85574 -10.73797 -10.68929 -10.62253 -10.53954 -10.07940 -9.73397 -9.43150 -8.83699 -8.41235 -6.89349 -5.72777 -3.01771 2.81285 3.17043 3.46623 3.51573 3.53923 4.25892 4.38780 4.44533 4.64695 4.85533 4.98002 5.10927 5.13059 5.17574 5.21284 5.28874 5.40848 5.45802 5.49265 5.54205 5.62599 5.65593 5.69925 5.73324 5.76566 5.81031 5.88522 5.91016 5.96276 6.08051 6.09405 6.13359 6.17099 6.27732 6.28440 6.63778 6.80500 6.97320 7.59519 7.73589 8.41014 8.46322 9.56678 10.13341 10.48563 11.50258 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035696 B = 0.003761 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.220358 B = 7442.072667 C = 7660.973440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.613 5.613 3 C 0.108 3.892 4 C 0.143 3.857 5 N -0.731 5.731 6 C -0.237 4.237 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.524 3.476 15 O -0.533 6.533 16 C -0.108 4.108 17 H 0.091 0.909 18 C -0.114 4.114 19 C -0.121 4.121 20 C -0.113 4.113 21 C -0.053 4.053 22 C -0.154 4.154 23 C -0.140 4.140 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.017 0.983 30 H 0.022 0.978 31 H 0.384 0.616 32 H 0.255 0.745 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.170 -20.238 7.713 24.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.347 5.347 3 C -0.015 4.015 4 C 0.015 3.985 5 N -0.375 5.375 6 C -0.368 4.368 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.312 3.688 15 O -0.409 6.409 16 C -0.129 4.129 17 H 0.109 0.891 18 C -0.152 4.152 19 C -0.159 4.159 20 C -0.151 4.151 21 C -0.053 4.053 22 C -0.211 4.211 23 C -0.198 4.198 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.102 0.898 28 H 0.093 0.907 29 H 0.035 0.965 30 H 0.040 0.960 31 H 0.217 0.783 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.503 -20.185 7.542 24.426 hybrid contribution 0.176 0.827 -0.679 1.084 sum -11.327 -19.359 6.864 23.456 Atomic orbital electron populations 1.21898 0.80069 1.02958 1.01980 1.47843 1.06735 1.06377 1.73724 1.21700 0.97437 0.83274 0.99052 1.20900 0.95003 0.89307 0.93308 1.42219 1.67001 1.21749 1.06560 1.19214 1.29097 1.02549 0.85987 0.91235 1.24742 1.01248 0.98095 0.96920 1.69665 1.44935 1.19738 1.23940 0.86163 0.77679 0.79225 0.82985 1.21720 1.21713 1.20748 1.20390 0.88058 0.84989 0.75346 1.90700 1.13897 1.87023 1.49272 1.22158 1.00220 0.93249 0.97313 0.89109 1.22376 1.01988 0.93140 0.97705 1.22454 1.01462 0.96954 0.95025 1.22482 1.00765 0.95077 0.96769 1.21029 0.95897 0.95522 0.92855 1.22132 1.01764 0.98705 0.98480 1.21984 0.94653 1.01723 1.01393 0.92575 0.91054 0.90876 0.89831 0.90679 0.96515 0.96023 0.78295 0.93510 0.91475 0.89597 0.91618 0.91356 0.91526 0.91124 0.92418 0.92577 0.91150 0.92325 0.92295 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 9.91 59.85 0.59 1.36 16 2 N -0.61 -8.95 2.62 -181.57 -0.48 -9.43 16 3 C 0.11 1.93 5.56 -4.04 -0.02 1.91 16 4 C 0.14 3.15 6.58 -4.05 -0.03 3.13 16 5 N -0.73 -19.63 5.60 -59.91 -0.34 -19.97 16 6 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 7 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 9 N -0.93 -29.04 13.06 55.49 0.72 -28.31 16 10 Si 0.91 23.06 29.55 -169.99 -5.02 18.04 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 13 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 14 C 0.52 8.00 4.52 -10.99 -0.05 7.95 16 15 O -0.53 -10.38 14.35 5.56 0.08 -10.30 16 16 C -0.11 -1.21 2.18 -90.65 -0.20 -1.41 16 17 H 0.09 0.86 5.85 -51.93 -0.30 0.56 16 18 C -0.11 -1.27 6.32 -25.07 -0.16 -1.42 16 19 C -0.12 -1.05 6.91 -24.74 -0.17 -1.22 16 20 C -0.11 -1.01 5.90 -25.08 -0.15 -1.16 16 21 C -0.05 -0.50 0.93 -153.39 -0.14 -0.65 16 22 C -0.15 -1.73 7.24 37.16 0.27 -1.46 16 23 C -0.14 -1.02 8.02 37.16 0.30 -0.72 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.58 4.42 -51.93 -0.23 0.35 16 26 H 0.07 0.69 7.89 -51.93 -0.41 0.28 16 27 H 0.08 1.66 7.42 -51.93 -0.39 1.27 16 28 H 0.07 1.23 7.89 -51.93 -0.41 0.82 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.38 10.66 7.67 -40.82 -0.31 10.35 16 32 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 33 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 34 H 0.09 1.18 6.96 -51.93 -0.36 0.82 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.49 7.84 -51.93 -0.41 0.08 16 38 H 0.07 0.70 7.80 -51.93 -0.41 0.30 16 39 H 0.06 0.69 7.18 -51.93 -0.37 0.31 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.97 6.81 -51.93 -0.35 0.62 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.40 6.34 -51.93 -0.33 0.07 16 LS Contribution 339.55 15.07 5.12 5.12 Total: -1.00 -33.71 339.55 -7.55 -41.26 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -7.63 Total: 4.92 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 0.00 Total: -1.33 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: -0.09 Total: -57.71 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.08 Total: -10.30 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.04 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.71 -7.55 -41.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493657141.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.780 kcal (2) G-P(sol) polarization free energy of solvation -33.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds