Wall clock time and date at job start Mon Mar 30 2020 01:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46502 * 119.99712 * 2 1 4 4 C 1.52994 * 109.46957 * 269.99810 * 3 2 1 5 5 N 1.46496 * 109.47256 * 180.02562 * 4 3 2 6 6 C 1.36937 * 120.00498 * 179.72320 * 5 4 3 7 7 H 1.08004 * 119.99670 * 0.28088 * 6 5 4 8 8 C 1.38807 * 120.00288 * 180.27195 * 6 5 4 9 9 N 1.31621 * 120.00056 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00104 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47099 * 90.00241 * 10 8 6 12 12 H 1.48505 * 109.47428 * 210.00067 * 10 8 6 13 13 H 1.48504 * 109.47300 * 329.99972 * 10 8 6 14 14 C 1.34777 * 119.99767 * 179.97438 * 2 1 3 15 15 O 1.21279 * 119.99560 * 180.02562 * 14 2 1 16 16 C 1.50698 * 120.00194 * 0.02562 * 14 2 1 17 17 H 1.08999 * 110.01608 * 23.38408 * 16 14 2 18 18 C 1.54265 * 110.03206 * 144.77867 * 16 14 2 19 19 C 1.54890 * 104.19903 * 142.89545 * 18 16 14 20 20 C 1.54889 * 102.74366 * 322.05731 * 19 18 16 21 21 C 1.53878 * 110.02994 * 261.94093 * 16 14 2 22 22 C 1.52998 * 110.03289 * 0.02562 * 21 16 14 23 23 C 1.53006 * 110.02910 * 121.43465 * 21 16 14 24 24 H 1.09002 * 109.46815 * 90.00114 * 1 2 3 25 25 H 1.09004 * 109.47017 * 210.00039 * 1 2 3 26 26 H 1.08995 * 109.47289 * 330.00308 * 1 2 3 27 27 H 1.09000 * 109.46785 * 150.00002 * 3 2 1 28 28 H 1.08999 * 109.47278 * 29.99926 * 3 2 1 29 29 H 1.09006 * 109.47478 * 60.00076 * 4 3 2 30 30 H 1.09005 * 109.47469 * 300.00505 * 4 3 2 31 31 H 0.97001 * 119.99618 * 0.02562 * 5 4 3 32 32 H 0.97001 * 119.99834 * 179.97438 * 9 8 6 33 33 H 1.09007 * 110.48458 * 261.57533 * 18 16 14 34 34 H 1.09000 * 110.48855 * 24.07488 * 18 16 14 35 35 H 1.08999 * 110.75585 * 80.36413 * 19 18 16 36 36 H 1.08991 * 110.75729 * 203.55760 * 19 18 16 37 37 H 1.08999 * 110.48833 * 156.62725 * 20 19 18 38 38 H 1.09005 * 110.48600 * 279.26100 * 20 19 18 39 39 H 1.08995 * 109.47291 * 57.49946 * 22 21 16 40 40 H 1.09005 * 109.46949 * 177.49618 * 22 21 16 41 41 H 1.08997 * 109.46936 * 297.49445 * 22 21 16 42 42 H 1.08992 * 109.47412 * 59.99289 * 23 21 16 43 43 H 1.08998 * 109.47090 * 180.02562 * 23 21 16 44 44 H 1.09004 * 109.46535 * 299.99778 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1854 2.9788 -1.4425 6 6 3.5328 3.5689 -2.6284 7 1 3.2625 3.1014 -3.5637 8 6 4.2323 4.7679 -2.6284 9 7 4.5620 5.3374 -1.4885 10 14 4.7055 5.5731 -4.2461 11 1 3.6217 6.4920 -4.6774 12 1 5.9638 6.3414 -4.0673 13 1 4.9075 4.5262 -5.2798 14 6 2.1389 -1.1672 0.0005 15 8 3.3517 -1.1672 0.0010 16 6 1.3854 -2.4723 0.0005 17 1 0.3849 -2.3255 -0.4064 18 6 2.1468 -3.5221 -0.8348 19 6 1.9337 -4.8485 -0.0639 20 6 2.0074 -4.3989 1.4165 21 6 1.2968 -3.0298 1.4320 22 6 2.0009 -2.0842 2.4072 23 6 -0.1684 -3.2044 1.8367 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 3.1499 1.1384 0.5138 28 1 1.6084 2.0284 0.5138 29 1 1.5000 1.8407 -1.9564 30 1 3.0415 0.9507 -1.9564 31 1 3.4285 3.3985 -0.6025 32 1 5.0511 6.1751 -1.4886 33 1 1.7244 -3.5914 -1.8373 34 1 3.2070 -3.2738 -0.8851 35 1 0.9559 -5.2739 -0.2900 36 1 2.7259 -5.5608 -0.2941 37 1 1.4833 -5.1081 2.0572 38 1 3.0455 -4.2935 1.7319 39 1 1.5512 -1.0935 2.3414 40 1 1.8944 -2.4647 3.4231 41 1 3.0587 -2.0208 2.1520 42 1 -0.6545 -3.8984 1.1511 43 1 -0.2205 -3.5989 2.8514 44 1 -0.6740 -2.2395 1.7960 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493657141.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:52 Heat of formation + Delta-G solvation = -60.187185 kcal Electronic energy + Delta-G solvation = -21527.796910 eV Core-core repulsion = 18478.890501 eV Total energy + Delta-G solvation = -3048.906408 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.81345 -38.99091 -37.30197 -36.09851 -33.49076 -33.12308 -30.93303 -29.33400 -28.32666 -27.39226 -26.06558 -25.20301 -23.43470 -21.91232 -20.86289 -19.33482 -18.99985 -18.15599 -17.22711 -16.81008 -16.56363 -15.98783 -15.71721 -15.31711 -15.14866 -14.96407 -14.52873 -14.34346 -14.23798 -13.82161 -13.63955 -13.38230 -13.10883 -12.93193 -12.79682 -12.76180 -12.66766 -12.42091 -12.19546 -12.15686 -11.93469 -11.89992 -11.71894 -11.51957 -11.41208 -11.31548 -11.00813 -10.67243 -9.68037 -9.10258 -8.00575 -5.31942 1.44148 1.47325 1.55821 1.63338 1.99338 2.53816 3.32441 3.40521 3.56182 3.62938 3.95331 4.03933 4.17856 4.22088 4.25470 4.33649 4.39340 4.42408 4.44661 4.50410 4.52834 4.67168 4.71841 4.78399 4.87115 4.90449 4.96274 5.02280 5.04479 5.07149 5.10036 5.19015 5.22099 5.34546 5.36416 5.39924 5.44695 5.55102 5.57917 6.20788 6.43880 7.22374 7.26795 7.97791 8.23892 9.22860 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035696 B = 0.003761 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.220358 B = 7442.072667 C = 7660.973440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.613 5.613 3 C 0.123 3.877 4 C 0.151 3.849 5 N -0.743 5.743 6 C -0.254 4.254 7 H 0.072 0.928 8 C -0.072 4.072 9 N -0.968 5.968 10 Si 0.979 3.021 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.272 1.272 14 C 0.517 3.483 15 O -0.586 6.586 16 C -0.102 4.102 17 H 0.118 0.882 18 C -0.120 4.120 19 C -0.113 4.113 20 C -0.114 4.114 21 C -0.050 4.050 22 C -0.150 4.150 23 C -0.137 4.137 24 H 0.065 0.935 25 H 0.100 0.900 26 H 0.085 0.915 27 H 0.055 0.945 28 H 0.094 0.906 29 H 0.030 0.970 30 H -0.004 1.004 31 H 0.375 0.625 32 H 0.254 0.746 33 H 0.077 0.923 34 H 0.048 0.952 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.049 0.951 39 H 0.048 0.952 40 H 0.072 0.928 41 H 0.032 0.968 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.939 -21.641 7.428 27.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.345 5.345 3 C -0.001 4.001 4 C 0.023 3.977 5 N -0.387 5.387 6 C -0.386 4.386 7 H 0.090 0.910 8 C -0.264 4.264 9 N -0.618 5.618 10 Si 0.807 3.193 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.197 1.197 14 C 0.307 3.693 15 O -0.466 6.466 16 C -0.124 4.124 17 H 0.136 0.864 18 C -0.158 4.158 19 C -0.150 4.150 20 C -0.152 4.152 21 C -0.050 4.050 22 C -0.208 4.208 23 C -0.193 4.193 24 H 0.084 0.916 25 H 0.118 0.882 26 H 0.104 0.896 27 H 0.074 0.926 28 H 0.112 0.888 29 H 0.048 0.952 30 H 0.014 0.986 31 H 0.207 0.793 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.091 0.909 41 H 0.051 0.949 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.333 -21.623 7.252 26.936 hybrid contribution 1.055 1.234 -0.573 1.722 sum -13.278 -20.389 6.679 25.231 Atomic orbital electron populations 1.22227 0.76923 1.05114 1.03274 1.47950 1.08571 1.04877 1.73106 1.21317 0.97259 0.85490 0.96066 1.20934 0.94156 0.86695 0.95935 1.42404 1.67533 1.23102 1.05622 1.19595 1.29132 1.02953 0.86893 0.90988 1.25641 1.01427 0.98768 1.00599 1.69823 1.45719 1.20067 1.26177 0.85065 0.77211 0.78208 0.78792 1.20621 1.21812 1.19715 1.21248 0.87712 0.86392 0.73908 1.90677 1.16545 1.87837 1.51580 1.22276 1.00622 0.90596 0.98861 0.86378 1.22402 0.99772 0.94767 0.98890 1.22449 1.02993 0.95493 0.94063 1.22499 0.99863 0.95278 0.97519 1.21087 0.97828 0.95076 0.91051 1.22085 0.99582 0.99025 1.00088 1.21974 0.92207 1.02719 1.02448 0.91620 0.88192 0.89596 0.92648 0.88759 0.95238 0.98635 0.79272 0.93711 0.90433 0.93357 0.88994 0.91100 0.89081 0.93252 0.93266 0.90884 0.94854 0.90553 0.91245 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.18 9.91 127.77 1.27 2.45 16 2 N -0.61 -17.63 2.62 -846.76 -2.22 -19.85 16 3 C 0.12 4.48 5.56 86.38 0.48 4.96 16 4 C 0.15 6.77 6.58 86.38 0.57 7.34 16 5 N -0.74 -40.96 5.60 -343.46 -1.92 -42.88 16 6 C -0.25 -15.12 9.99 84.03 0.84 -14.28 16 7 H 0.07 4.15 7.83 -2.91 -0.02 4.12 16 8 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 9 N -0.97 -61.09 13.06 21.65 0.28 -60.80 16 10 Si 0.98 47.57 29.55 68.60 2.03 49.60 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 13 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 14 C 0.52 16.07 4.52 87.66 0.40 16.47 16 15 O -0.59 -24.49 14.35 -3.03 -0.04 -24.53 16 16 C -0.10 -2.15 2.18 -10.82 -0.02 -2.17 16 17 H 0.12 1.82 5.85 -2.39 -0.01 1.80 16 18 C -0.12 -2.60 6.32 31.67 0.20 -2.40 16 19 C -0.11 -1.70 6.91 31.89 0.22 -1.48 16 20 C -0.11 -1.82 5.90 31.67 0.19 -1.64 16 21 C -0.05 -0.86 0.93 -51.46 -0.05 -0.90 16 22 C -0.15 -3.34 7.24 71.98 0.52 -2.82 16 23 C -0.14 -1.40 8.02 71.98 0.58 -0.83 16 24 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.10 1.22 4.42 -2.39 -0.01 1.21 16 26 H 0.09 1.36 7.89 -2.39 -0.02 1.34 16 27 H 0.05 2.34 7.42 -2.39 -0.02 2.32 16 28 H 0.09 3.07 7.89 -2.39 -0.02 3.05 16 29 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 31 H 0.38 21.57 7.67 -92.71 -0.71 20.86 16 32 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 33 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.05 1.41 6.96 -2.39 -0.02 1.39 16 35 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.09 1.03 7.84 -2.39 -0.02 1.01 16 38 H 0.05 0.99 7.80 -2.38 -0.02 0.97 16 39 H 0.05 1.15 7.18 -2.39 -0.02 1.13 16 40 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.03 0.98 6.81 -2.39 -0.02 0.96 16 42 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.06 0.59 6.34 -2.38 -0.02 0.57 16 Total: -1.00 -76.05 339.55 4.04 -72.01 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: 0.26 Total: 25.56 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 5.65 Total: 0.88 kcal Atomic # 7 Polarization: -119.68 SS G_CDS: -3.86 Total: -123.54 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.04 Total: -24.53 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.60 kcal Total: -76.05 4.04 -72.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493657141.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.828 kcal (2) G-P(sol) polarization free energy of solvation -76.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds