Wall clock time and date at job start Mon Mar 30 2020 01:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46494 * 119.99836 * 2 1 4 4 C 1.53004 * 109.47566 * 90.00094 * 3 2 1 5 5 N 1.46494 * 109.47566 * 179.97438 * 4 3 2 6 6 C 1.36932 * 120.00088 * 180.27737 * 5 4 3 7 7 H 1.07997 * 120.00391 * 359.71818 * 6 5 4 8 8 C 1.38815 * 119.99800 * 179.72607 * 6 5 4 9 9 N 1.31619 * 120.00315 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99770 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47256 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46941 * 119.99739 * 10 8 6 13 13 H 1.48496 * 109.47581 * 239.99667 * 10 8 6 14 14 C 1.34778 * 119.99964 * 179.97438 * 2 1 3 15 15 O 1.21286 * 119.99791 * 185.02233 * 14 2 1 16 16 C 1.50694 * 119.99890 * 5.02554 * 14 2 1 17 17 H 1.09000 * 110.01971 * 326.26086 * 16 14 2 18 18 C 1.54272 * 110.03045 * 204.81882 * 16 14 2 19 19 C 1.54893 * 104.19369 * 217.10591 * 18 16 14 20 20 C 1.54889 * 102.74962 * 37.94120 * 19 18 16 21 21 C 1.53876 * 110.03282 * 87.65227 * 16 14 2 22 22 C 1.53004 * 110.03206 * 238.56676 * 21 16 14 23 23 C 1.52993 * 110.03239 * 359.95045 * 21 16 14 24 24 H 1.09000 * 109.46946 * 95.36662 * 1 2 3 25 25 H 1.08999 * 109.47226 * 215.37118 * 1 2 3 26 26 H 1.09003 * 109.46977 * 335.36772 * 1 2 3 27 27 H 1.09002 * 109.47445 * 329.99681 * 3 2 1 28 28 H 1.09003 * 109.47480 * 210.00269 * 3 2 1 29 29 H 1.08995 * 109.46775 * 59.99619 * 4 3 2 30 30 H 1.08999 * 109.46516 * 300.00207 * 4 3 2 31 31 H 0.97002 * 120.00041 * 359.97438 * 5 4 3 32 32 H 0.97002 * 119.99608 * 180.02562 * 9 8 6 33 33 H 1.09001 * 110.48667 * 335.78282 * 18 16 14 34 34 H 1.08997 * 110.48423 * 98.42977 * 18 16 14 35 35 H 1.08998 * 110.75330 * 279.62365 * 19 18 16 36 36 H 1.09000 * 110.91057 * 156.33383 * 19 18 16 37 37 H 1.08997 * 110.48407 * 203.37772 * 20 19 18 38 38 H 1.09000 * 110.59990 * 80.79361 * 20 19 18 39 39 H 1.08999 * 109.46806 * 60.00050 * 22 21 16 40 40 H 1.08998 * 109.47322 * 180.02562 * 22 21 16 41 41 H 1.09008 * 109.47068 * 300.00096 * 22 21 16 42 42 H 1.08994 * 109.47207 * 58.35309 * 23 21 16 43 43 H 1.09005 * 109.46788 * 178.35266 * 23 21 16 44 44 H 1.09000 * 109.47194 * 298.35227 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 1.4425 5 7 3.1855 2.9789 1.4425 6 6 3.5329 3.5689 2.6283 7 1 3.2626 3.1015 3.5637 8 6 4.2324 4.7679 2.6282 9 7 4.5622 5.3374 1.4884 10 14 4.7057 5.5732 4.2460 11 1 4.2218 4.7383 5.3747 12 1 6.1834 5.6994 4.3223 13 1 4.0889 6.9215 4.3270 14 6 2.1389 -1.1672 0.0005 15 8 3.3483 -1.1692 0.0925 16 6 1.3897 -2.4698 -0.1132 17 1 0.4250 -2.3904 0.3878 18 6 2.2180 -3.6119 0.5109 19 6 1.9448 -4.8266 -0.4107 20 6 1.8976 -4.1834 -1.8189 21 6 1.1861 -2.8331 -1.5945 22 6 -0.3068 -2.9703 -1.9001 23 6 1.8069 -1.7576 -2.4881 24 1 -0.3633 -0.0961 -1.0232 25 1 -0.3633 -0.8380 0.5949 26 1 -0.3633 0.9342 0.4283 27 1 1.6084 2.0284 -0.5139 28 1 3.1499 1.1385 -0.5139 29 1 3.0416 0.9508 1.9563 30 1 1.5001 1.8407 1.9563 31 1 3.4286 3.3986 0.6024 32 1 5.0513 6.1751 1.4884 33 1 3.2786 -3.3606 0.5064 34 1 1.8783 -3.8190 1.5256 35 1 0.9894 -5.2903 -0.1655 36 1 2.7537 -5.5543 -0.3452 37 1 1.3242 -4.8075 -2.5043 38 1 2.9057 -4.0244 -2.2019 39 1 -0.8088 -2.0257 -1.6905 40 1 -0.4406 -3.2280 -2.9507 41 1 -0.7347 -3.7554 -1.2765 42 1 2.8686 -1.6641 -2.2601 43 1 1.6832 -2.0384 -3.5341 44 1 1.3110 -0.8039 -2.3068 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493657143.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:55 Heat of formation + Delta-G solvation = -38.020825 kcal Electronic energy + Delta-G solvation = -21561.388830 eV Core-core repulsion = 18513.443628 eV Total energy + Delta-G solvation = -3047.945203 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.76621 -37.94933 -35.81739 -34.31406 -32.35291 -31.44513 -29.66885 -27.95961 -27.58594 -26.29576 -24.87383 -23.60257 -21.73404 -20.86804 -19.88599 -18.05899 -17.21557 -16.95419 -16.01078 -15.79721 -15.13269 -14.68175 -14.40883 -13.80500 -13.73160 -13.50989 -13.30461 -13.24106 -12.91334 -12.83374 -12.72632 -12.37850 -12.07594 -11.83129 -11.51763 -11.26963 -11.17591 -10.97880 -10.87496 -10.85538 -10.71769 -10.67078 -10.63357 -10.53813 -10.04503 -9.73848 -9.43603 -8.84118 -8.41539 -6.89195 -5.72968 -3.01816 2.82665 3.16622 3.46364 3.51934 3.54378 4.26354 4.37616 4.45690 4.64641 4.83454 5.06727 5.08384 5.10999 5.14950 5.22136 5.28520 5.38871 5.47151 5.49624 5.54790 5.64158 5.64766 5.69444 5.74085 5.77054 5.79927 5.87954 5.90603 5.97352 6.08692 6.09093 6.13696 6.18164 6.26104 6.30209 6.63381 6.80125 6.98455 7.59693 7.74217 8.40889 8.46138 9.56617 10.13343 10.48486 11.50130 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036685 B = 0.003763 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.064696 B = 7438.969732 C = 7656.960059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.613 5.613 3 C 0.109 3.891 4 C 0.143 3.857 5 N -0.731 5.731 6 C -0.236 4.236 7 H 0.070 0.930 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.523 3.477 15 O -0.533 6.533 16 C -0.108 4.108 17 H 0.092 0.908 18 C -0.115 4.115 19 C -0.122 4.122 20 C -0.114 4.114 21 C -0.052 4.052 22 C -0.140 4.140 23 C -0.155 4.155 24 H 0.055 0.945 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.023 0.977 30 H 0.017 0.983 31 H 0.384 0.616 32 H 0.254 0.746 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.379 -19.887 -8.252 24.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.346 5.346 3 C -0.014 4.014 4 C 0.014 3.986 5 N -0.375 5.375 6 C -0.368 4.368 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.219 1.219 14 C 0.311 3.689 15 O -0.409 6.409 16 C -0.129 4.129 17 H 0.110 0.890 18 C -0.153 4.153 19 C -0.159 4.159 20 C -0.152 4.152 21 C -0.052 4.052 22 C -0.197 4.197 23 C -0.212 4.212 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.101 0.899 29 H 0.041 0.959 30 H 0.034 0.966 31 H 0.217 0.783 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.726 -19.839 -8.026 24.403 hybrid contribution 0.206 0.797 0.652 1.050 sum -11.520 -19.042 -7.373 23.445 Atomic orbital electron populations 1.21867 0.80063 1.03317 1.01344 1.47831 1.06699 1.06327 1.73764 1.21683 0.97300 0.83345 0.99046 1.20907 0.95016 0.89319 0.93317 1.42227 1.66991 1.21767 1.06562 1.19261 1.28986 1.02495 0.86010 0.91176 1.24744 1.01279 0.98107 0.96917 1.69674 1.44968 1.19738 1.23886 0.86094 0.77946 0.79102 0.82939 1.20563 1.21816 1.21856 1.20377 0.87998 0.85084 0.75394 1.90709 1.14213 1.86904 1.49065 1.22163 1.00024 0.93299 0.97437 0.88982 1.22382 1.01810 0.92909 0.98228 1.22456 1.01376 0.97202 0.94897 1.22484 1.00660 0.94835 0.97189 1.21017 0.95902 0.95747 0.92545 1.21979 0.94311 1.01883 1.01567 1.22131 1.01763 0.98201 0.99094 0.92692 0.91467 0.90488 0.90663 0.89941 0.95884 0.96557 0.78308 0.93567 0.89372 0.91533 0.91651 0.91398 0.91530 0.91213 0.92325 0.92397 0.92412 0.91628 0.92501 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 9.59 59.85 0.57 1.36 16 2 N -0.61 -8.83 2.18 -181.57 -0.40 -9.22 16 3 C 0.11 1.93 5.46 -4.04 -0.02 1.91 16 4 C 0.14 3.13 6.58 -4.04 -0.03 3.11 16 5 N -0.73 -19.59 5.60 -59.91 -0.34 -19.93 16 6 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 7 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 8 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 9 N -0.93 -29.01 13.06 55.49 0.72 -28.29 16 10 Si 0.91 23.06 29.55 -169.99 -5.02 18.03 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 13 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 14 C 0.52 7.97 4.60 -10.99 -0.05 7.92 16 15 O -0.53 -10.45 14.70 5.55 0.08 -10.37 16 16 C -0.11 -1.20 2.34 -90.65 -0.21 -1.41 16 17 H 0.09 0.87 5.61 -51.93 -0.29 0.57 16 18 C -0.12 -1.28 6.30 -25.07 -0.16 -1.44 16 19 C -0.12 -1.05 6.91 -24.74 -0.17 -1.22 16 20 C -0.11 -1.01 5.90 -25.07 -0.15 -1.16 16 21 C -0.05 -0.49 0.94 -153.39 -0.14 -0.63 16 22 C -0.14 -1.02 8.14 37.16 0.30 -0.71 16 23 C -0.15 -1.71 7.20 37.15 0.27 -1.44 16 24 H 0.05 0.46 6.52 -51.93 -0.34 0.12 16 25 H 0.07 0.56 6.20 -51.93 -0.32 0.24 16 26 H 0.08 0.78 8.03 -51.93 -0.42 0.36 16 27 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 28 H 0.08 1.62 7.50 -51.93 -0.39 1.23 16 29 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.38 10.63 7.67 -40.82 -0.31 10.32 16 32 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 33 H 0.09 1.21 6.81 -51.93 -0.35 0.86 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.49 7.84 -51.93 -0.41 0.08 16 38 H 0.07 0.69 7.85 -51.93 -0.41 0.28 16 39 H 0.06 0.40 6.77 -51.93 -0.35 0.05 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 42 H 0.06 0.90 7.05 -51.93 -0.37 0.53 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.71 6.24 -51.93 -0.32 0.38 16 LS Contribution 339.30 15.07 5.11 5.11 Total: -1.00 -33.74 339.30 -7.50 -41.23 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -7.63 Total: 4.76 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -0.03 Total: -1.34 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: -0.01 Total: -57.43 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.08 Total: -10.37 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.74 -7.50 -41.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493657143.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.213 kcal (2) G-P(sol) polarization free energy of solvation -33.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds