Wall clock time and date at job start Mon Mar 30 2020 01:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46494 * 119.99836 * 2 1 4 4 C 1.53004 * 109.47566 * 90.00094 * 3 2 1 5 5 N 1.46494 * 109.47566 * 179.97438 * 4 3 2 6 6 C 1.36932 * 120.00088 * 180.27737 * 5 4 3 7 7 H 1.07997 * 120.00391 * 359.71818 * 6 5 4 8 8 C 1.38815 * 119.99800 * 179.72607 * 6 5 4 9 9 N 1.31619 * 120.00315 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99770 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47256 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46941 * 119.99739 * 10 8 6 13 13 H 1.48496 * 109.47581 * 239.99667 * 10 8 6 14 14 C 1.34778 * 119.99964 * 179.97438 * 2 1 3 15 15 O 1.21286 * 119.99791 * 185.02233 * 14 2 1 16 16 C 1.50694 * 119.99890 * 5.02554 * 14 2 1 17 17 H 1.09000 * 110.01971 * 326.26086 * 16 14 2 18 18 C 1.54272 * 110.03045 * 204.81882 * 16 14 2 19 19 C 1.54893 * 104.19369 * 217.10591 * 18 16 14 20 20 C 1.54889 * 102.74962 * 37.94120 * 19 18 16 21 21 C 1.53876 * 110.03282 * 87.65227 * 16 14 2 22 22 C 1.53004 * 110.03206 * 238.56676 * 21 16 14 23 23 C 1.52993 * 110.03239 * 359.95045 * 21 16 14 24 24 H 1.09000 * 109.46946 * 95.36662 * 1 2 3 25 25 H 1.08999 * 109.47226 * 215.37118 * 1 2 3 26 26 H 1.09003 * 109.46977 * 335.36772 * 1 2 3 27 27 H 1.09002 * 109.47445 * 329.99681 * 3 2 1 28 28 H 1.09003 * 109.47480 * 210.00269 * 3 2 1 29 29 H 1.08995 * 109.46775 * 59.99619 * 4 3 2 30 30 H 1.08999 * 109.46516 * 300.00207 * 4 3 2 31 31 H 0.97002 * 120.00041 * 359.97438 * 5 4 3 32 32 H 0.97002 * 119.99608 * 180.02562 * 9 8 6 33 33 H 1.09001 * 110.48667 * 335.78282 * 18 16 14 34 34 H 1.08997 * 110.48423 * 98.42977 * 18 16 14 35 35 H 1.08998 * 110.75330 * 279.62365 * 19 18 16 36 36 H 1.09000 * 110.91057 * 156.33383 * 19 18 16 37 37 H 1.08997 * 110.48407 * 203.37772 * 20 19 18 38 38 H 1.09000 * 110.59990 * 80.79361 * 20 19 18 39 39 H 1.08999 * 109.46806 * 60.00050 * 22 21 16 40 40 H 1.08998 * 109.47322 * 180.02562 * 22 21 16 41 41 H 1.09008 * 109.47068 * 300.00096 * 22 21 16 42 42 H 1.08994 * 109.47207 * 58.35309 * 23 21 16 43 43 H 1.09005 * 109.46788 * 178.35266 * 23 21 16 44 44 H 1.09000 * 109.47194 * 298.35227 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 1.4425 5 7 3.1855 2.9789 1.4425 6 6 3.5329 3.5689 2.6283 7 1 3.2626 3.1015 3.5637 8 6 4.2324 4.7679 2.6282 9 7 4.5622 5.3374 1.4884 10 14 4.7057 5.5732 4.2460 11 1 4.2218 4.7383 5.3747 12 1 6.1834 5.6994 4.3223 13 1 4.0889 6.9215 4.3270 14 6 2.1389 -1.1672 0.0005 15 8 3.3483 -1.1692 0.0925 16 6 1.3897 -2.4698 -0.1132 17 1 0.4250 -2.3904 0.3878 18 6 2.2180 -3.6119 0.5109 19 6 1.9448 -4.8266 -0.4107 20 6 1.8976 -4.1834 -1.8189 21 6 1.1861 -2.8331 -1.5945 22 6 -0.3068 -2.9703 -1.9001 23 6 1.8069 -1.7576 -2.4881 24 1 -0.3633 -0.0961 -1.0232 25 1 -0.3633 -0.8380 0.5949 26 1 -0.3633 0.9342 0.4283 27 1 1.6084 2.0284 -0.5139 28 1 3.1499 1.1385 -0.5139 29 1 3.0416 0.9508 1.9563 30 1 1.5001 1.8407 1.9563 31 1 3.4286 3.3986 0.6024 32 1 5.0513 6.1751 1.4884 33 1 3.2786 -3.3606 0.5064 34 1 1.8783 -3.8190 1.5256 35 1 0.9894 -5.2903 -0.1655 36 1 2.7537 -5.5543 -0.3452 37 1 1.3242 -4.8075 -2.5043 38 1 2.9057 -4.0244 -2.2019 39 1 -0.8088 -2.0257 -1.6905 40 1 -0.4406 -3.2280 -2.9507 41 1 -0.7347 -3.7554 -1.2765 42 1 2.8686 -1.6641 -2.2601 43 1 1.6832 -2.0384 -3.5341 44 1 1.3110 -0.8039 -2.3068 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493657143.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:55 Heat of formation + Delta-G solvation = -59.502388 kcal Electronic energy + Delta-G solvation = -21562.320341 eV Core-core repulsion = 18513.443628 eV Total energy + Delta-G solvation = -3048.876713 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.80858 -38.96932 -37.32280 -36.10685 -33.50147 -33.06055 -30.91543 -29.32281 -28.32840 -27.39512 -26.07083 -25.18723 -23.41634 -21.87082 -20.87799 -19.34178 -18.96821 -18.12286 -17.26761 -16.86705 -16.58870 -15.93384 -15.71169 -15.29327 -15.16169 -14.95961 -14.58329 -14.34596 -14.17487 -13.70694 -13.64201 -13.33048 -13.11540 -12.93923 -12.84177 -12.74263 -12.69327 -12.42908 -12.22291 -12.11606 -11.93278 -11.89355 -11.67771 -11.49265 -11.40298 -11.30225 -11.02093 -10.67291 -9.66808 -9.09901 -8.00650 -5.31802 1.44193 1.46508 1.56551 1.65442 1.99507 2.53775 3.32558 3.41390 3.56865 3.64411 3.94218 4.03748 4.17074 4.22541 4.28573 4.32360 4.39853 4.42552 4.47613 4.50741 4.53199 4.68335 4.75286 4.80418 4.87860 4.91371 4.99315 5.03097 5.06418 5.07324 5.10279 5.20470 5.23248 5.35997 5.38510 5.40147 5.45832 5.56302 5.58008 6.20931 6.44951 7.23079 7.26941 7.98053 8.24032 9.22974 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036685 B = 0.003763 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.064696 B = 7438.969732 C = 7656.960059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.611 5.611 3 C 0.124 3.876 4 C 0.150 3.850 5 N -0.743 5.743 6 C -0.252 4.252 7 H 0.072 0.928 8 C -0.072 4.072 9 N -0.968 5.968 10 Si 0.979 3.021 11 H -0.267 1.267 12 H -0.292 1.292 13 H -0.286 1.286 14 C 0.517 3.483 15 O -0.589 6.589 16 C -0.102 4.102 17 H 0.120 0.880 18 C -0.122 4.122 19 C -0.113 4.113 20 C -0.115 4.115 21 C -0.048 4.048 22 C -0.136 4.136 23 C -0.152 4.152 24 H 0.080 0.920 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.054 0.946 29 H -0.004 1.004 30 H 0.030 0.970 31 H 0.375 0.625 32 H 0.254 0.746 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.048 0.952 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.026 0.974 43 H 0.072 0.928 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.209 -21.254 -8.051 27.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.343 5.343 3 C 0.000 4.000 4 C 0.022 3.978 5 N -0.387 5.387 6 C -0.384 4.384 7 H 0.090 0.910 8 C -0.265 4.265 9 N -0.618 5.618 10 Si 0.807 3.193 11 H -0.192 1.192 12 H -0.219 1.219 13 H -0.212 1.212 14 C 0.307 3.693 15 O -0.469 6.469 16 C -0.123 4.123 17 H 0.138 0.862 18 C -0.160 4.160 19 C -0.150 4.150 20 C -0.153 4.153 21 C -0.049 4.049 22 C -0.193 4.193 23 C -0.209 4.209 24 H 0.098 0.902 25 H 0.110 0.890 26 H 0.098 0.902 27 H 0.113 0.887 28 H 0.072 0.928 29 H 0.014 0.986 30 H 0.048 0.952 31 H 0.207 0.793 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.046 0.954 43 H 0.091 0.909 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.617 -21.240 -7.822 26.944 hybrid contribution 1.101 1.193 0.572 1.721 sum -13.516 -20.047 -7.249 25.241 Atomic orbital electron populations 1.22210 0.76872 1.04617 1.03568 1.47927 1.08543 1.04776 1.73083 1.21294 0.97115 0.85572 0.96010 1.20942 0.94176 0.86667 0.95988 1.42411 1.67518 1.23120 1.05614 1.19630 1.28995 1.02877 0.86902 0.90990 1.25638 1.01478 0.98789 1.00574 1.69828 1.45762 1.20091 1.26115 0.85004 0.77212 0.78107 0.78982 1.19159 1.21899 1.21219 1.21231 0.87609 0.86500 0.73958 1.90685 1.16944 1.87750 1.51529 1.22273 1.00322 0.90473 0.99192 0.86227 1.22403 0.99615 0.94311 0.99642 1.22447 1.02780 0.96063 0.93750 1.22506 0.99929 0.94952 0.97874 1.21064 0.97923 0.95211 0.90669 1.21966 0.91751 1.02978 1.02627 1.22093 0.99393 0.98849 1.00565 0.90161 0.89005 0.90217 0.88738 0.92772 0.98602 0.95218 0.79279 0.93727 0.93147 0.90568 0.89082 0.91172 0.89142 0.93284 0.91570 0.91401 0.90749 0.95436 0.90934 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.20 9.59 127.77 1.23 2.42 16 2 N -0.61 -17.31 2.18 -846.75 -1.85 -19.16 16 3 C 0.12 4.50 5.46 86.38 0.47 4.97 16 4 C 0.15 6.73 6.58 86.38 0.57 7.30 16 5 N -0.74 -40.88 5.60 -343.47 -1.92 -42.80 16 6 C -0.25 -15.01 9.99 84.03 0.84 -14.17 16 7 H 0.07 4.15 7.83 -2.91 -0.02 4.13 16 8 C -0.07 -4.32 5.50 84.86 0.47 -3.86 16 9 N -0.97 -61.06 13.06 21.65 0.28 -60.77 16 10 Si 0.98 47.61 29.55 68.60 2.03 49.64 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 12 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 13 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 14 C 0.52 15.98 4.60 87.66 0.40 16.38 16 15 O -0.59 -24.75 14.70 -3.05 -0.04 -24.80 16 16 C -0.10 -2.11 2.34 -10.81 -0.03 -2.14 16 17 H 0.12 1.81 5.61 -2.39 -0.01 1.79 16 18 C -0.12 -2.63 6.30 31.67 0.20 -2.43 16 19 C -0.11 -1.70 6.91 31.89 0.22 -1.48 16 20 C -0.12 -1.82 5.90 31.67 0.19 -1.63 16 21 C -0.05 -0.81 0.94 -51.46 -0.05 -0.86 16 22 C -0.14 -1.38 8.14 71.98 0.59 -0.79 16 23 C -0.15 -3.27 7.20 71.98 0.52 -2.76 16 24 H 0.08 1.04 6.52 -2.39 -0.02 1.02 16 25 H 0.09 1.17 6.20 -2.39 -0.01 1.15 16 26 H 0.08 1.39 8.03 -2.39 -0.02 1.37 16 27 H 0.09 3.05 8.07 -2.39 -0.02 3.03 16 28 H 0.05 2.27 7.50 -2.39 -0.02 2.25 16 29 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 30 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.38 21.53 7.67 -92.71 -0.71 20.82 16 32 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 33 H 0.05 1.48 6.81 -2.39 -0.02 1.46 16 34 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.09 1.02 7.84 -2.39 -0.02 1.00 16 38 H 0.05 0.97 7.85 -2.39 -0.02 0.95 16 39 H 0.07 0.59 6.77 -2.39 -0.02 0.57 16 40 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 42 H 0.03 0.79 7.05 -2.39 -0.02 0.77 16 43 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 44 H 0.06 1.25 6.24 -2.39 -0.01 1.24 16 Total: -1.00 -76.26 339.30 4.37 -71.89 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: 0.26 Total: 25.03 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: 5.61 Total: 0.97 kcal Atomic # 7 Polarization: -119.25 SS G_CDS: -3.49 Total: -122.74 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.04 Total: -24.80 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.64 kcal Total: -76.26 4.37 -71.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493657143.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.388 kcal (2) G-P(sol) polarization free energy of solvation -76.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds