Wall clock time and date at job start Mon Mar 30 2020 01:35:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46502 * 1
3 3 C 1.46494 * 119.99836 * 2 1
4 4 C 1.53004 * 109.47566 * 90.00094 * 3 2 1
5 5 N 1.46494 * 109.47566 * 179.97438 * 4 3 2
6 6 C 1.36932 * 120.00088 * 180.27737 * 5 4 3
7 7 H 1.07997 * 120.00391 * 359.71818 * 6 5 4
8 8 C 1.38815 * 119.99800 * 179.72607 * 6 5 4
9 9 N 1.31619 * 120.00315 * 359.97438 * 8 6 5
10 10 Si 1.86802 * 119.99770 * 179.97438 * 8 6 5
11 11 H 1.48498 * 109.47256 * 0.02562 * 10 8 6
12 12 H 1.48500 * 109.46941 * 119.99739 * 10 8 6
13 13 H 1.48496 * 109.47581 * 239.99667 * 10 8 6
14 14 C 1.34778 * 119.99964 * 179.97438 * 2 1 3
15 15 O 1.21286 * 119.99791 * 185.02233 * 14 2 1
16 16 C 1.50694 * 119.99890 * 5.02554 * 14 2 1
17 17 H 1.09000 * 110.01971 * 326.26086 * 16 14 2
18 18 C 1.54272 * 110.03045 * 204.81882 * 16 14 2
19 19 C 1.54893 * 104.19369 * 217.10591 * 18 16 14
20 20 C 1.54889 * 102.74962 * 37.94120 * 19 18 16
21 21 C 1.53876 * 110.03282 * 87.65227 * 16 14 2
22 22 C 1.53004 * 110.03206 * 238.56676 * 21 16 14
23 23 C 1.52993 * 110.03239 * 359.95045 * 21 16 14
24 24 H 1.09000 * 109.46946 * 95.36662 * 1 2 3
25 25 H 1.08999 * 109.47226 * 215.37118 * 1 2 3
26 26 H 1.09003 * 109.46977 * 335.36772 * 1 2 3
27 27 H 1.09002 * 109.47445 * 329.99681 * 3 2 1
28 28 H 1.09003 * 109.47480 * 210.00269 * 3 2 1
29 29 H 1.08995 * 109.46775 * 59.99619 * 4 3 2
30 30 H 1.08999 * 109.46516 * 300.00207 * 4 3 2
31 31 H 0.97002 * 120.00041 * 359.97438 * 5 4 3
32 32 H 0.97002 * 119.99608 * 180.02562 * 9 8 6
33 33 H 1.09001 * 110.48667 * 335.78282 * 18 16 14
34 34 H 1.08997 * 110.48423 * 98.42977 * 18 16 14
35 35 H 1.08998 * 110.75330 * 279.62365 * 19 18 16
36 36 H 1.09000 * 110.91057 * 156.33383 * 19 18 16
37 37 H 1.08997 * 110.48407 * 203.37772 * 20 19 18
38 38 H 1.09000 * 110.59990 * 80.79361 * 20 19 18
39 39 H 1.08999 * 109.46806 * 60.00050 * 22 21 16
40 40 H 1.08998 * 109.47322 * 180.02562 * 22 21 16
41 41 H 1.09008 * 109.47068 * 300.00096 * 22 21 16
42 42 H 1.08994 * 109.47207 * 58.35309 * 23 21 16
43 43 H 1.09005 * 109.46788 * 178.35266 * 23 21 16
44 44 H 1.09000 * 109.47194 * 298.35227 * 23 21 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4525 1.7105 1.4425
5 7 3.1855 2.9789 1.4425
6 6 3.5329 3.5689 2.6283
7 1 3.2626 3.1015 3.5637
8 6 4.2324 4.7679 2.6282
9 7 4.5622 5.3374 1.4884
10 14 4.7057 5.5732 4.2460
11 1 4.2218 4.7383 5.3747
12 1 6.1834 5.6994 4.3223
13 1 4.0889 6.9215 4.3270
14 6 2.1389 -1.1672 0.0005
15 8 3.3483 -1.1692 0.0925
16 6 1.3897 -2.4698 -0.1132
17 1 0.4250 -2.3904 0.3878
18 6 2.2180 -3.6119 0.5109
19 6 1.9448 -4.8266 -0.4107
20 6 1.8976 -4.1834 -1.8189
21 6 1.1861 -2.8331 -1.5945
22 6 -0.3068 -2.9703 -1.9001
23 6 1.8069 -1.7576 -2.4881
24 1 -0.3633 -0.0961 -1.0232
25 1 -0.3633 -0.8380 0.5949
26 1 -0.3633 0.9342 0.4283
27 1 1.6084 2.0284 -0.5139
28 1 3.1499 1.1385 -0.5139
29 1 3.0416 0.9508 1.9563
30 1 1.5001 1.8407 1.9563
31 1 3.4286 3.3986 0.6024
32 1 5.0513 6.1751 1.4884
33 1 3.2786 -3.3606 0.5064
34 1 1.8783 -3.8190 1.5256
35 1 0.9894 -5.2903 -0.1655
36 1 2.7537 -5.5543 -0.3452
37 1 1.3242 -4.8075 -2.5043
38 1 2.9057 -4.0244 -2.2019
39 1 -0.8088 -2.0257 -1.6905
40 1 -0.4406 -3.2280 -2.9507
41 1 -0.7347 -3.7554 -1.2765
42 1 2.8686 -1.6641 -2.2601
43 1 1.6832 -2.0384 -3.5341
44 1 1.3110 -0.8039 -2.3068
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001493657143.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:35:55
Heat of formation + Delta-G solvation = -59.502388 kcal
Electronic energy + Delta-G solvation = -21562.320341 eV
Core-core repulsion = 18513.443628 eV
Total energy + Delta-G solvation = -3048.876713 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.189 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-41.80858 -38.96932 -37.32280 -36.10685 -33.50147 -33.06055 -30.91543 -29.32281
-28.32840 -27.39512 -26.07083 -25.18723 -23.41634 -21.87082 -20.87799 -19.34178
-18.96821 -18.12286 -17.26761 -16.86705 -16.58870 -15.93384 -15.71169 -15.29327
-15.16169 -14.95961 -14.58329 -14.34596 -14.17487 -13.70694 -13.64201 -13.33048
-13.11540 -12.93923 -12.84177 -12.74263 -12.69327 -12.42908 -12.22291 -12.11606
-11.93278 -11.89355 -11.67771 -11.49265 -11.40298 -11.30225 -11.02093 -10.67291
-9.66808 -9.09901 -8.00650 -5.31802 1.44193 1.46508 1.56551 1.65442
1.99507 2.53775 3.32558 3.41390 3.56865 3.64411 3.94218 4.03748
4.17074 4.22541 4.28573 4.32360 4.39853 4.42552 4.47613 4.50741
4.53199 4.68335 4.75286 4.80418 4.87860 4.91371 4.99315 5.03097
5.06418 5.07324 5.10279 5.20470 5.23248 5.35997 5.38510 5.40147
5.45832 5.56302 5.58008 6.20931 6.44951 7.23079 7.26941 7.98053
8.24032 9.22974
Molecular weight = 268.19amu
Principal moments of inertia in cm(-1)
A = 0.036685 B = 0.003763 C = 0.003656
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 763.064696 B = 7438.969732 C = 7656.960059
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.069 3.931
2 N -0.611 5.611
3 C 0.124 3.876
4 C 0.150 3.850
5 N -0.743 5.743
6 C -0.252 4.252
7 H 0.072 0.928
8 C -0.072 4.072
9 N -0.968 5.968
10 Si 0.979 3.021
11 H -0.267 1.267
12 H -0.292 1.292
13 H -0.286 1.286
14 C 0.517 3.483
15 O -0.589 6.589
16 C -0.102 4.102
17 H 0.120 0.880
18 C -0.122 4.122
19 C -0.113 4.113
20 C -0.115 4.115
21 C -0.048 4.048
22 C -0.136 4.136
23 C -0.152 4.152
24 H 0.080 0.920
25 H 0.092 0.908
26 H 0.079 0.921
27 H 0.094 0.906
28 H 0.054 0.946
29 H -0.004 1.004
30 H 0.030 0.970
31 H 0.375 0.625
32 H 0.254 0.746
33 H 0.050 0.950
34 H 0.076 0.924
35 H 0.091 0.909
36 H 0.070 0.930
37 H 0.090 0.910
38 H 0.048 0.952
39 H 0.065 0.935
40 H 0.067 0.933
41 H 0.074 0.926
42 H 0.026 0.974
43 H 0.072 0.928
44 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.209 -21.254 -8.051 27.347
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 N -0.343 5.343
3 C 0.000 4.000
4 C 0.022 3.978
5 N -0.387 5.387
6 C -0.384 4.384
7 H 0.090 0.910
8 C -0.265 4.265
9 N -0.618 5.618
10 Si 0.807 3.193
11 H -0.192 1.192
12 H -0.219 1.219
13 H -0.212 1.212
14 C 0.307 3.693
15 O -0.469 6.469
16 C -0.123 4.123
17 H 0.138 0.862
18 C -0.160 4.160
19 C -0.150 4.150
20 C -0.153 4.153
21 C -0.049 4.049
22 C -0.193 4.193
23 C -0.209 4.209
24 H 0.098 0.902
25 H 0.110 0.890
26 H 0.098 0.902
27 H 0.113 0.887
28 H 0.072 0.928
29 H 0.014 0.986
30 H 0.048 0.952
31 H 0.207 0.793
32 H 0.063 0.937
33 H 0.069 0.931
34 H 0.094 0.906
35 H 0.109 0.891
36 H 0.088 0.912
37 H 0.109 0.891
38 H 0.067 0.933
39 H 0.084 0.916
40 H 0.086 0.914
41 H 0.093 0.907
42 H 0.046 0.954
43 H 0.091 0.909
44 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -14.617 -21.240 -7.822 26.944
hybrid contribution 1.101 1.193 0.572 1.721
sum -13.516 -20.047 -7.249 25.241
Atomic orbital electron populations
1.22210 0.76872 1.04617 1.03568 1.47927 1.08543 1.04776 1.73083
1.21294 0.97115 0.85572 0.96010 1.20942 0.94176 0.86667 0.95988
1.42411 1.67518 1.23120 1.05614 1.19630 1.28995 1.02877 0.86902
0.90990 1.25638 1.01478 0.98789 1.00574 1.69828 1.45762 1.20091
1.26115 0.85004 0.77212 0.78107 0.78982 1.19159 1.21899 1.21219
1.21231 0.87609 0.86500 0.73958 1.90685 1.16944 1.87750 1.51529
1.22273 1.00322 0.90473 0.99192 0.86227 1.22403 0.99615 0.94311
0.99642 1.22447 1.02780 0.96063 0.93750 1.22506 0.99929 0.94952
0.97874 1.21064 0.97923 0.95211 0.90669 1.21966 0.91751 1.02978
1.02627 1.22093 0.99393 0.98849 1.00565 0.90161 0.89005 0.90217
0.88738 0.92772 0.98602 0.95218 0.79279 0.93727 0.93147 0.90568
0.89082 0.91172 0.89142 0.93284 0.91570 0.91401 0.90749 0.95436
0.90934 0.92470
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 1.20 9.59 127.77 1.23 2.42 16
2 N -0.61 -17.31 2.18 -846.75 -1.85 -19.16 16
3 C 0.12 4.50 5.46 86.38 0.47 4.97 16
4 C 0.15 6.73 6.58 86.38 0.57 7.30 16
5 N -0.74 -40.88 5.60 -343.47 -1.92 -42.80 16
6 C -0.25 -15.01 9.99 84.03 0.84 -14.17 16
7 H 0.07 4.15 7.83 -2.91 -0.02 4.13 16
8 C -0.07 -4.32 5.50 84.86 0.47 -3.86 16
9 N -0.97 -61.06 13.06 21.65 0.28 -60.77 16
10 Si 0.98 47.61 29.55 68.60 2.03 49.64 16
11 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16
12 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16
13 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16
14 C 0.52 15.98 4.60 87.66 0.40 16.38 16
15 O -0.59 -24.75 14.70 -3.05 -0.04 -24.80 16
16 C -0.10 -2.11 2.34 -10.81 -0.03 -2.14 16
17 H 0.12 1.81 5.61 -2.39 -0.01 1.79 16
18 C -0.12 -2.63 6.30 31.67 0.20 -2.43 16
19 C -0.11 -1.70 6.91 31.89 0.22 -1.48 16
20 C -0.12 -1.82 5.90 31.67 0.19 -1.63 16
21 C -0.05 -0.81 0.94 -51.46 -0.05 -0.86 16
22 C -0.14 -1.38 8.14 71.98 0.59 -0.79 16
23 C -0.15 -3.27 7.20 71.98 0.52 -2.76 16
24 H 0.08 1.04 6.52 -2.39 -0.02 1.02 16
25 H 0.09 1.17 6.20 -2.39 -0.01 1.15 16
26 H 0.08 1.39 8.03 -2.39 -0.02 1.37 16
27 H 0.09 3.05 8.07 -2.39 -0.02 3.03 16
28 H 0.05 2.27 7.50 -2.39 -0.02 2.25 16
29 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16
30 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16
31 H 0.38 21.53 7.67 -92.71 -0.71 20.82 16
32 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16
33 H 0.05 1.48 6.81 -2.39 -0.02 1.46 16
34 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16
35 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16
36 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16
37 H 0.09 1.02 7.84 -2.39 -0.02 1.00 16
38 H 0.05 0.97 7.85 -2.39 -0.02 0.95 16
39 H 0.07 0.59 6.77 -2.39 -0.02 0.57 16
40 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16
41 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16
42 H 0.03 0.79 7.05 -2.39 -0.02 0.77 16
43 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16
44 H 0.06 1.25 6.24 -2.39 -0.01 1.24 16
Total: -1.00 -76.26 339.30 4.37 -71.89
By element:
Atomic # 1 Polarization: 24.78 SS G_CDS: 0.26 Total: 25.03 kcal
Atomic # 6 Polarization: -4.64 SS G_CDS: 5.61 Total: 0.97 kcal
Atomic # 7 Polarization: -119.25 SS G_CDS: -3.49 Total: -122.74 kcal
Atomic # 8 Polarization: -24.75 SS G_CDS: -0.04 Total: -24.80 kcal
Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.64 kcal
Total: -76.26 4.37 -71.89 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001493657143.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 12.388 kcal
(2) G-P(sol) polarization free energy of solvation -76.258 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.870 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.368 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.891 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.502 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds