Wall clock time and date at job start Mon Mar 30 2020 01:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53007 * 109.46669 * 2 1 4 4 C 1.53003 * 109.47179 * 240.00399 * 2 1 3 5 5 C 1.52999 * 109.47345 * 120.00074 * 2 1 3 6 6 C 1.50693 * 109.47058 * 60.00077 * 5 2 1 7 7 O 1.21282 * 120.00098 * 0.02562 * 6 5 2 8 8 N 1.34774 * 120.00004 * 179.97438 * 6 5 2 9 9 C 1.46506 * 120.00322 * 179.97438 * 8 6 5 10 10 C 1.52994 * 110.64012 * 303.14651 * 9 8 6 11 11 C 1.55153 * 110.72444 * 179.97438 * 9 8 6 12 12 C 1.54913 * 101.58439 * 276.96560 * 11 9 8 13 13 N 1.47427 * 104.82892 * 322.98978 * 12 11 9 14 14 C 1.36931 * 125.64401 * 204.08931 * 13 12 11 15 15 H 1.07996 * 120.00365 * 210.12216 * 14 13 12 16 16 C 1.38814 * 120.00174 * 30.12940 * 14 13 12 17 17 N 1.31624 * 120.00255 * 196.24190 * 16 14 13 18 18 Si 1.86802 * 120.00150 * 16.23445 * 16 14 13 19 19 H 1.48499 * 109.47271 * 273.58634 * 18 16 14 20 20 H 1.48503 * 109.46795 * 33.58480 * 18 16 14 21 21 H 1.48498 * 109.47316 * 153.58437 * 18 16 14 22 22 C 1.47024 * 108.70353 * 24.35553 * 13 12 11 23 23 H 1.08995 * 109.46766 * 299.99604 * 1 2 3 24 24 H 1.08998 * 109.47014 * 60.00332 * 1 2 3 25 25 H 1.09000 * 109.46626 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46476 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47131 * 299.99596 * 3 2 1 28 28 H 1.08998 * 109.46813 * 60.00004 * 3 2 1 29 29 H 1.08997 * 109.46969 * 299.99536 * 4 2 1 30 30 H 1.09002 * 109.47036 * 59.99619 * 4 2 1 31 31 H 1.08997 * 109.46678 * 179.97438 * 4 2 1 32 32 H 1.08997 * 109.46954 * 300.00059 * 5 2 1 33 33 H 1.08998 * 109.46861 * 180.02562 * 5 2 1 34 34 H 0.97002 * 120.00096 * 0.02562 * 8 6 5 35 35 H 1.08994 * 109.47072 * 296.85272 * 10 9 8 36 36 H 1.09004 * 109.47492 * 56.85418 * 10 9 8 37 37 H 1.09005 * 109.47023 * 176.85582 * 10 9 8 38 38 H 1.08992 * 111.00635 * 158.88433 * 11 9 8 39 39 H 1.09005 * 111.00187 * 35.03635 * 11 9 8 40 40 H 1.08995 * 110.36407 * 204.14705 * 12 11 9 41 41 H 1.09004 * 110.36323 * 81.82765 * 12 11 9 42 42 H 0.96994 * 119.99954 * 179.97438 * 17 16 14 43 43 H 1.09001 * 109.87590 * 118.13236 * 22 13 12 44 44 H 1.08994 * 109.87693 * 239.29172 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 6 1.5378 -2.1420 1.2492 7 8 0.8409 -2.5388 0.3393 8 7 1.8639 -2.9720 2.2597 9 6 1.3752 -4.3532 2.2600 10 6 -0.1525 -4.3847 2.1826 11 6 1.8775 -5.1130 3.5160 12 6 3.2953 -5.5491 3.0695 13 7 3.1549 -5.8825 1.6403 14 6 3.9688 -6.7278 0.9345 15 1 4.1284 -6.5671 -0.1215 16 6 4.5886 -7.7913 1.5761 17 7 5.6018 -8.4056 1.0030 18 14 3.9848 -8.3506 3.2530 19 1 4.6497 -7.5487 4.3113 20 1 2.5145 -8.1606 3.3383 21 1 4.3102 -9.7871 3.4425 22 6 2.0002 -5.1524 1.0970 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 3.1300 1.4426 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6768 -1.7488 -1.2493 30 1 1.6767 -0.2073 -2.1393 31 1 3.1301 -0.7207 -1.2495 32 1 1.6768 -0.2074 2.1392 33 1 3.1301 -0.7208 1.2494 34 1 2.4216 -2.6548 2.9872 35 1 -0.5711 -3.9114 3.0707 36 1 -0.4825 -3.8462 1.2941 37 1 -0.4923 -5.4190 2.1277 38 1 1.2501 -5.9793 3.7255 39 1 1.9266 -4.4502 4.3800 40 1 3.6182 -6.4241 3.6334 41 1 4.0028 -4.7301 3.2003 42 1 6.0351 -9.1484 1.4515 43 1 2.3284 -4.4720 0.3112 44 1 1.2700 -5.8570 0.6992 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500182064.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:43 Heat of formation + Delta-G solvation = -16.332286 kcal Electronic energy + Delta-G solvation = -22091.211907 eV Core-core repulsion = 19044.207190 eV Total energy + Delta-G solvation = -3047.004717 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.33560 -38.23745 -36.19340 -34.05955 -32.12932 -30.69950 -29.04490 -27.93952 -27.20550 -27.10464 -26.14325 -23.50694 -21.21380 -20.86653 -19.13969 -18.82251 -17.15689 -16.74156 -15.71929 -15.52080 -15.24313 -14.50705 -14.33131 -14.26604 -13.60438 -13.41663 -13.21518 -12.75107 -12.65525 -12.46523 -12.23398 -12.09800 -11.92401 -11.73913 -11.51654 -11.50519 -11.23384 -11.05786 -10.98963 -10.77830 -10.67966 -10.64329 -10.55944 -10.40530 -9.80584 -9.42177 -9.04902 -8.72023 -8.51511 -6.88240 -5.94448 -3.33435 2.87725 3.27936 3.38287 3.44021 3.48756 4.52035 4.64562 4.74735 4.81981 4.91958 4.99700 5.26057 5.29837 5.36301 5.40255 5.43860 5.48961 5.53735 5.59953 5.77493 5.82494 5.86619 5.89403 5.92183 5.97583 6.03986 6.11515 6.15371 6.21113 6.25999 6.34405 6.43000 6.53857 6.54863 6.67409 6.71758 6.81055 7.05368 7.77774 7.86835 8.35572 8.52511 8.87196 9.68887 10.23336 11.22417 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029802 B = 0.005114 C = 0.004769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.320821 B = 5473.496097 C = 5869.869609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.049 4.049 3 C -0.142 4.142 4 C -0.154 4.154 5 C -0.134 4.134 6 C 0.516 3.484 7 O -0.527 6.527 8 N -0.714 5.714 9 C 0.160 3.840 10 C -0.152 4.152 11 C -0.137 4.137 12 C 0.113 3.887 13 N -0.610 5.610 14 C -0.241 4.241 15 H 0.086 0.914 16 C 0.025 3.975 17 N -0.912 5.912 18 Si 0.897 3.103 19 H -0.286 1.286 20 H -0.274 1.274 21 H -0.305 1.305 22 C 0.137 3.863 23 H 0.042 0.958 24 H 0.047 0.953 25 H 0.086 0.914 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.088 0.912 30 H 0.047 0.953 31 H 0.045 0.955 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.396 0.604 35 H 0.049 0.951 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.045 0.955 41 H 0.030 0.970 42 H 0.263 0.737 43 H 0.041 0.959 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.521 17.340 4.297 20.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.050 4.050 3 C -0.199 4.199 4 C -0.211 4.211 5 C -0.174 4.174 6 C 0.304 3.696 7 O -0.405 6.405 8 N -0.365 5.365 9 C 0.074 3.926 10 C -0.210 4.210 11 C -0.176 4.176 12 C -0.011 4.011 13 N -0.338 5.338 14 C -0.368 4.368 15 H 0.104 0.896 16 C -0.175 4.175 17 N -0.555 5.555 18 Si 0.731 3.269 19 H -0.215 1.215 20 H -0.200 1.200 21 H -0.233 1.233 22 C 0.012 3.988 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.105 0.895 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.106 0.894 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.230 0.770 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.062 0.938 41 H 0.047 0.953 42 H 0.073 0.927 43 H 0.059 0.941 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -9.854 16.845 3.573 19.840 hybrid contribution 0.247 -0.211 1.440 1.476 sum -9.607 16.634 5.012 19.852 Atomic orbital electron populations 1.22104 0.94237 1.04208 1.00373 1.20241 0.96240 0.94210 0.94284 1.21904 1.00887 0.95564 1.01569 1.22114 1.00113 1.03122 0.95773 1.21790 1.02447 0.93023 1.00105 1.20518 0.80157 0.87376 0.81591 1.90530 1.37826 1.77153 1.34964 1.46074 1.53317 1.11795 1.25289 1.21302 0.93739 0.80611 0.96923 1.22068 0.93640 1.02527 1.02800 1.23118 0.98761 0.99911 0.95811 1.21978 0.93544 0.97901 0.87681 1.44671 1.30667 1.52612 1.05802 1.18610 1.20040 1.03315 0.94863 0.89640 1.25250 0.97594 0.96340 0.98269 1.69780 1.21619 1.24550 1.39539 0.86686 0.79620 0.76103 0.84512 1.21456 1.19995 1.23337 1.21738 0.89487 0.93704 0.93911 0.93875 0.93356 0.89524 0.92731 0.92547 0.92930 0.89376 0.93385 0.93543 0.89432 0.89100 0.77025 0.93207 0.90033 0.91817 0.89945 0.91032 0.93753 0.95255 0.92669 0.94147 0.94392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.18 37.16 0.30 -1.39 16 2 C -0.05 -0.53 0.77 -154.50 -0.12 -0.65 16 3 C -0.14 -1.25 8.47 37.16 0.31 -0.93 16 4 C -0.15 -1.94 8.18 37.16 0.30 -1.64 16 5 C -0.13 -1.41 4.77 -27.89 -0.13 -1.54 16 6 C 0.52 7.15 6.46 -10.99 -0.07 7.08 16 7 O -0.53 -8.64 8.32 5.56 0.05 -8.59 16 8 N -0.71 -9.86 5.14 -45.91 -0.24 -10.10 16 9 C 0.16 2.63 0.81 -129.98 -0.11 2.52 16 10 C -0.15 -2.23 8.43 37.15 0.31 -1.92 16 11 C -0.14 -2.27 6.08 -24.58 -0.15 -2.42 16 12 C 0.11 2.41 6.20 -2.53 -0.02 2.40 16 13 N -0.61 -15.04 3.06 -170.06 -0.52 -15.56 16 14 C -0.24 -7.01 10.56 -15.06 -0.16 -7.17 16 15 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 16 C 0.02 0.73 5.47 -17.43 -0.10 0.63 16 17 N -0.91 -28.46 13.97 55.49 0.78 -27.69 16 18 Si 0.90 22.84 24.74 -169.99 -4.21 18.63 16 19 H -0.29 -6.97 6.61 56.52 0.37 -6.59 16 20 H -0.27 -6.76 7.10 56.52 0.40 -6.36 16 21 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 22 C 0.14 2.92 6.19 -3.06 -0.02 2.90 16 23 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.09 1.16 5.51 -51.93 -0.29 0.88 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 1.36 5.51 -51.93 -0.29 1.07 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.40 4.51 8.49 -40.82 -0.35 4.16 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 1.28 5.97 -51.93 -0.31 0.97 16 37 H 0.06 0.93 8.07 -51.93 -0.42 0.51 16 38 H 0.08 1.39 8.05 -51.93 -0.42 0.97 16 39 H 0.07 0.93 8.07 -51.93 -0.42 0.51 16 40 H 0.05 1.03 2.33 -51.93 -0.12 0.91 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 43 H 0.04 0.92 6.90 -51.93 -0.36 0.56 16 44 H 0.04 0.84 7.77 -51.93 -0.40 0.44 16 LS Contribution 329.19 15.07 4.96 4.96 Total: -1.00 -32.14 329.19 -6.41 -38.55 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -7.60 Total: 1.91 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: 0.37 Total: -2.13 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: 0.02 Total: -53.34 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.05 Total: -8.59 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.21 Total: 18.63 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.14 -6.41 -38.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500182064.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.222 kcal (2) G-P(sol) polarization free energy of solvation -32.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds