Wall clock time and date at job start Mon Mar 30 2020 01:39:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 C 1.53007 * 109.46669 * 2 1
4 4 C 1.53003 * 109.47179 * 240.00399 * 2 1 3
5 5 C 1.52999 * 109.47345 * 120.00074 * 2 1 3
6 6 C 1.50693 * 109.47058 * 60.00077 * 5 2 1
7 7 O 1.21282 * 120.00098 * 0.02562 * 6 5 2
8 8 N 1.34774 * 120.00004 * 179.97438 * 6 5 2
9 9 C 1.46506 * 120.00322 * 179.97438 * 8 6 5
10 10 C 1.52994 * 110.64012 * 303.14651 * 9 8 6
11 11 C 1.55153 * 110.72444 * 179.97438 * 9 8 6
12 12 C 1.54913 * 101.58439 * 276.96560 * 11 9 8
13 13 N 1.47427 * 104.82892 * 322.98978 * 12 11 9
14 14 C 1.36931 * 125.64401 * 204.08931 * 13 12 11
15 15 H 1.07996 * 120.00365 * 210.12216 * 14 13 12
16 16 C 1.38814 * 120.00174 * 30.12940 * 14 13 12
17 17 N 1.31624 * 120.00255 * 196.24190 * 16 14 13
18 18 Si 1.86802 * 120.00150 * 16.23445 * 16 14 13
19 19 H 1.48499 * 109.47271 * 273.58634 * 18 16 14
20 20 H 1.48503 * 109.46795 * 33.58480 * 18 16 14
21 21 H 1.48498 * 109.47316 * 153.58437 * 18 16 14
22 22 C 1.47024 * 108.70353 * 24.35553 * 13 12 11
23 23 H 1.08995 * 109.46766 * 299.99604 * 1 2 3
24 24 H 1.08998 * 109.47014 * 60.00332 * 1 2 3
25 25 H 1.09000 * 109.46626 * 179.97438 * 1 2 3
26 26 H 1.08999 * 109.46476 * 179.97438 * 3 2 1
27 27 H 1.08998 * 109.47131 * 299.99596 * 3 2 1
28 28 H 1.08998 * 109.46813 * 60.00004 * 3 2 1
29 29 H 1.08997 * 109.46969 * 299.99536 * 4 2 1
30 30 H 1.09002 * 109.47036 * 59.99619 * 4 2 1
31 31 H 1.08997 * 109.46678 * 179.97438 * 4 2 1
32 32 H 1.08997 * 109.46954 * 300.00059 * 5 2 1
33 33 H 1.08998 * 109.46861 * 180.02562 * 5 2 1
34 34 H 0.97002 * 120.00096 * 0.02562 * 8 6 5
35 35 H 1.08994 * 109.47072 * 296.85272 * 10 9 8
36 36 H 1.09004 * 109.47492 * 56.85418 * 10 9 8
37 37 H 1.09005 * 109.47023 * 176.85582 * 10 9 8
38 38 H 1.08992 * 111.00635 * 158.88433 * 11 9 8
39 39 H 1.09005 * 111.00187 * 35.03635 * 11 9 8
40 40 H 1.08995 * 110.36407 * 204.14705 * 12 11 9
41 41 H 1.09004 * 110.36323 * 81.82765 * 12 11 9
42 42 H 0.96994 * 119.99954 * 179.97438 * 17 16 14
43 43 H 1.09001 * 109.87590 * 118.13236 * 22 13 12
44 44 H 1.08994 * 109.87693 * 239.29172 * 22 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 2.0401 -0.7212 -1.2493
5 6 2.0401 -0.7213 1.2492
6 6 1.5378 -2.1420 1.2492
7 8 0.8409 -2.5388 0.3393
8 7 1.8639 -2.9720 2.2597
9 6 1.3752 -4.3532 2.2600
10 6 -0.1525 -4.3847 2.1826
11 6 1.8775 -5.1130 3.5160
12 6 3.2953 -5.5491 3.0695
13 7 3.1549 -5.8825 1.6403
14 6 3.9688 -6.7278 0.9345
15 1 4.1284 -6.5671 -0.1215
16 6 4.5886 -7.7913 1.5761
17 7 5.6018 -8.4056 1.0030
18 14 3.9848 -8.3506 3.2530
19 1 4.6497 -7.5487 4.3113
20 1 2.5145 -8.1606 3.3383
21 1 4.3102 -9.7871 3.4425
22 6 2.0002 -5.1524 1.0970
23 1 -0.3633 0.5138 0.8900
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3632 -1.0277 -0.0005
26 1 3.1300 1.4426 0.0005
27 1 1.6767 1.9564 -0.8900
28 1 1.6766 1.9563 0.8900
29 1 1.6768 -1.7488 -1.2493
30 1 1.6767 -0.2073 -2.1393
31 1 3.1301 -0.7207 -1.2495
32 1 1.6768 -0.2074 2.1392
33 1 3.1301 -0.7208 1.2494
34 1 2.4216 -2.6548 2.9872
35 1 -0.5711 -3.9114 3.0707
36 1 -0.4825 -3.8462 1.2941
37 1 -0.4923 -5.4190 2.1277
38 1 1.2501 -5.9793 3.7255
39 1 1.9266 -4.4502 4.3800
40 1 3.6182 -6.4241 3.6334
41 1 4.0028 -4.7301 3.2003
42 1 6.0351 -9.1484 1.4515
43 1 2.3284 -4.4720 0.3112
44 1 1.2700 -5.8570 0.6992
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001500182064.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:39:43
Heat of formation + Delta-G solvation = -38.521555 kcal
Electronic energy + Delta-G solvation = -22092.174106 eV
Core-core repulsion = 19044.207190 eV
Total energy + Delta-G solvation = -3047.966916 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.189 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-41.50003 -39.57738 -37.28429 -35.63035 -33.96584 -32.24484 -30.62558 -28.87228
-28.07812 -27.97064 -27.91245 -25.20480 -22.72070 -22.33630 -20.42781 -19.78877
-19.04256 -17.95615 -17.54915 -16.97651 -16.28675 -15.61085 -15.39217 -15.35476
-15.22089 -14.98008 -14.87577 -14.34708 -13.92623 -13.72383 -13.51137 -13.17751
-13.10633 -12.93513 -12.85766 -12.77416 -12.61255 -12.55700 -12.25256 -12.09870
-11.97262 -11.84785 -11.73798 -11.57120 -11.47998 -11.31895 -10.67164 -10.17703
-9.90290 -8.93363 -8.22729 -5.60206 1.25189 1.38146 1.50378 1.81903
2.30804 2.37820 3.02571 3.28520 3.55230 3.79246 3.82707 3.93496
3.99361 4.01993 4.34771 4.41920 4.50680 4.63066 4.66480 4.71131
4.72236 4.79359 4.83802 4.87766 4.89916 4.91407 4.99000 5.01898
5.05950 5.12926 5.19546 5.22750 5.30270 5.35552 5.42255 5.58754
5.63699 5.71882 5.84103 6.07659 6.72953 6.77761 7.46221 7.50206
8.09238 8.98378
Molecular weight = 268.19amu
Principal moments of inertia in cm(-1)
A = 0.029802 B = 0.005114 C = 0.004769
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 939.320821 B = 5473.496097 C = 5869.869609
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.050 4.050
3 C -0.136 4.136
4 C -0.153 4.153
5 C -0.127 4.127
6 C 0.508 3.492
7 O -0.556 6.556
8 N -0.709 5.709
9 C 0.173 3.827
10 C -0.144 4.144
11 C -0.123 4.123
12 C 0.103 3.897
13 N -0.626 5.626
14 C -0.246 4.246
15 H 0.036 0.964
16 C -0.034 4.034
17 N -0.960 5.960
18 Si 0.970 3.030
19 H -0.262 1.262
20 H -0.259 1.259
21 H -0.310 1.310
22 C 0.136 3.864
23 H 0.060 0.940
24 H 0.049 0.951
25 H 0.059 0.941
26 H 0.058 0.942
27 H 0.057 0.943
28 H 0.070 0.930
29 H 0.054 0.946
30 H 0.052 0.948
31 H 0.043 0.957
32 H 0.120 0.880
33 H 0.100 0.900
34 H 0.411 0.589
35 H 0.080 0.920
36 H 0.066 0.934
37 H 0.060 0.940
38 H 0.085 0.915
39 H 0.121 0.879
40 H 0.032 0.968
41 H 0.041 0.959
42 H 0.265 0.735
43 H 0.014 0.986
44 H 0.020 0.980
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.828 19.657 7.789 23.755
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.050 4.050
3 C -0.194 4.194
4 C -0.210 4.210
5 C -0.167 4.167
6 C 0.297 3.703
7 O -0.435 6.435
8 N -0.362 5.362
9 C 0.086 3.914
10 C -0.202 4.202
11 C -0.161 4.161
12 C -0.021 4.021
13 N -0.353 5.353
14 C -0.375 4.375
15 H 0.054 0.946
16 C -0.229 4.229
17 N -0.606 5.606
18 Si 0.800 3.200
19 H -0.189 1.189
20 H -0.184 1.184
21 H -0.239 1.239
22 C 0.010 3.990
23 H 0.079 0.921
24 H 0.068 0.932
25 H 0.078 0.922
26 H 0.077 0.923
27 H 0.076 0.924
28 H 0.089 0.911
29 H 0.073 0.927
30 H 0.071 0.929
31 H 0.062 0.938
32 H 0.139 0.861
33 H 0.118 0.882
34 H 0.248 0.752
35 H 0.099 0.901
36 H 0.084 0.916
37 H 0.079 0.921
38 H 0.103 0.897
39 H 0.139 0.861
40 H 0.049 0.951
41 H 0.059 0.941
42 H 0.074 0.926
43 H 0.032 0.968
44 H 0.038 0.962
Dipole moment (debyes) X Y Z Total
from point charges -11.171 19.216 7.090 23.330
hybrid contribution 0.693 -0.886 0.163 1.136
sum -10.478 18.330 7.253 22.324
Atomic orbital electron populations
1.22031 0.94447 1.02712 1.01332 1.20264 0.96059 0.95407 0.93282
1.21847 1.01127 0.93810 1.02574 1.22072 0.99869 1.01518 0.97561
1.21831 1.02879 0.90685 1.01276 1.21205 0.79574 0.88639 0.80900
1.90551 1.39096 1.77935 1.35966 1.45983 1.53614 1.10548 1.26024
1.21045 0.94506 0.81366 0.94468 1.21987 0.92097 1.02553 1.03567
1.23109 0.95069 1.00874 0.97031 1.22204 0.97137 0.97715 0.85014
1.44741 1.31036 1.52066 1.07500 1.18438 1.20778 1.04687 0.93555
0.94575 1.26000 0.97397 0.96260 1.03220 1.69937 1.23178 1.25431
1.42038 0.85518 0.79769 0.75156 0.79565 1.18940 1.18425 1.23935
1.21789 0.88303 0.93207 0.95661 0.92105 0.93199 0.92170 0.92330
0.92397 0.91128 0.92735 0.92911 0.93784 0.86144 0.88218 0.75194
0.90107 0.91552 0.92063 0.89673 0.86073 0.95062 0.94112 0.92606
0.96786 0.96189
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.05 8.18 71.98 0.59 -2.46 16
2 C -0.05 -0.98 0.77 -52.18 -0.04 -1.02 16
3 C -0.14 -1.98 8.47 71.98 0.61 -1.37 16
4 C -0.15 -3.88 8.18 71.98 0.59 -3.29 16
5 C -0.13 -2.32 4.77 29.85 0.14 -2.18 16
6 C 0.51 13.30 6.46 87.66 0.57 13.86 16
7 O -0.56 -18.40 8.32 -3.04 -0.03 -18.43 16
8 N -0.71 -17.67 5.14 -417.56 -2.15 -19.82 16
9 C 0.17 5.29 0.81 4.79 0.00 5.30 16
10 C -0.14 -3.88 8.43 71.98 0.61 -3.27 16
11 C -0.12 -3.52 6.08 31.99 0.19 -3.33 16
12 C 0.10 4.11 6.20 86.86 0.54 4.65 16
13 N -0.63 -31.15 3.06 -691.96 -2.12 -33.26 16
14 C -0.25 -14.94 10.56 84.03 0.89 -14.05 16
15 H 0.04 2.48 8.06 -2.91 -0.02 2.45 16
16 C -0.03 -2.04 5.47 84.86 0.46 -1.58 16
17 N -0.96 -62.13 13.97 21.65 0.30 -61.83 16
18 Si 0.97 47.14 24.74 68.60 1.70 48.83 16
19 H -0.26 -11.68 6.61 99.48 0.66 -11.02 16
20 H -0.26 -11.86 7.10 99.48 0.71 -11.15 16
21 H -0.31 -15.23 7.11 99.48 0.71 -14.53 16
22 C 0.14 5.89 6.19 86.73 0.54 6.43 16
23 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16
24 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16
25 H 0.06 1.59 5.51 -2.39 -0.01 1.58 16
26 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16
27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16
28 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16
29 H 0.05 1.77 5.51 -2.39 -0.01 1.75 16
30 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16
31 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16
32 H 0.12 1.45 8.14 -2.39 -0.02 1.44 16
33 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16
34 H 0.41 7.65 8.49 -92.71 -0.79 6.87 16
35 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16
36 H 0.07 2.03 5.97 -2.39 -0.01 2.01 16
37 H 0.06 1.67 8.07 -2.38 -0.02 1.65 16
38 H 0.08 2.47 8.05 -2.39 -0.02 2.45 16
39 H 0.12 2.35 8.07 -2.38 -0.02 2.34 16
40 H 0.03 1.36 2.33 -2.39 -0.01 1.35 16
41 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16
42 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16
43 H 0.01 0.67 6.90 -2.39 -0.02 0.66 16
44 H 0.02 0.92 7.77 -2.39 -0.02 0.90 16
Total: -1.00 -74.75 329.19 3.53 -71.22
By element:
Atomic # 1 Polarization: 15.44 SS G_CDS: 0.14 Total: 15.58 kcal
Atomic # 6 Polarization: -7.98 SS G_CDS: 5.69 Total: -2.29 kcal
Atomic # 7 Polarization: -110.94 SS G_CDS: -3.96 Total: -114.91 kcal
Atomic # 8 Polarization: -18.40 SS G_CDS: -0.03 Total: -18.43 kcal
Atomic # 14 Polarization: 47.14 SS G_CDS: 1.70 Total: 48.83 kcal
Total: -74.75 3.53 -71.22 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001500182064.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 32.693 kcal
(2) G-P(sol) polarization free energy of solvation -74.750 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.056 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.535 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.215 kcal
(6) G-S(sol) free energy of system = (1) + (5) -38.522 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds