Wall clock time and date at job start Mon Mar 30 2020 01:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53007 * 109.46669 * 2 1 4 4 C 1.53003 * 109.47179 * 240.00399 * 2 1 3 5 5 C 1.52999 * 109.47345 * 120.00074 * 2 1 3 6 6 C 1.50693 * 109.47058 * 60.00077 * 5 2 1 7 7 O 1.21282 * 120.00098 * 0.02562 * 6 5 2 8 8 N 1.34774 * 120.00004 * 179.97438 * 6 5 2 9 9 C 1.46506 * 120.00322 * 179.97438 * 8 6 5 10 10 C 1.52994 * 110.64012 * 303.14651 * 9 8 6 11 11 C 1.55153 * 110.72444 * 179.97438 * 9 8 6 12 12 C 1.54913 * 101.58439 * 276.96560 * 11 9 8 13 13 N 1.47427 * 104.82892 * 322.98978 * 12 11 9 14 14 C 1.36931 * 125.64401 * 204.08931 * 13 12 11 15 15 H 1.07996 * 120.00365 * 210.12216 * 14 13 12 16 16 C 1.38814 * 120.00174 * 30.12940 * 14 13 12 17 17 N 1.31624 * 120.00255 * 196.24190 * 16 14 13 18 18 Si 1.86802 * 120.00150 * 16.23445 * 16 14 13 19 19 H 1.48499 * 109.47271 * 273.58634 * 18 16 14 20 20 H 1.48503 * 109.46795 * 33.58480 * 18 16 14 21 21 H 1.48498 * 109.47316 * 153.58437 * 18 16 14 22 22 C 1.47024 * 108.70353 * 24.35553 * 13 12 11 23 23 H 1.08995 * 109.46766 * 299.99604 * 1 2 3 24 24 H 1.08998 * 109.47014 * 60.00332 * 1 2 3 25 25 H 1.09000 * 109.46626 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46476 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47131 * 299.99596 * 3 2 1 28 28 H 1.08998 * 109.46813 * 60.00004 * 3 2 1 29 29 H 1.08997 * 109.46969 * 299.99536 * 4 2 1 30 30 H 1.09002 * 109.47036 * 59.99619 * 4 2 1 31 31 H 1.08997 * 109.46678 * 179.97438 * 4 2 1 32 32 H 1.08997 * 109.46954 * 300.00059 * 5 2 1 33 33 H 1.08998 * 109.46861 * 180.02562 * 5 2 1 34 34 H 0.97002 * 120.00096 * 0.02562 * 8 6 5 35 35 H 1.08994 * 109.47072 * 296.85272 * 10 9 8 36 36 H 1.09004 * 109.47492 * 56.85418 * 10 9 8 37 37 H 1.09005 * 109.47023 * 176.85582 * 10 9 8 38 38 H 1.08992 * 111.00635 * 158.88433 * 11 9 8 39 39 H 1.09005 * 111.00187 * 35.03635 * 11 9 8 40 40 H 1.08995 * 110.36407 * 204.14705 * 12 11 9 41 41 H 1.09004 * 110.36323 * 81.82765 * 12 11 9 42 42 H 0.96994 * 119.99954 * 179.97438 * 17 16 14 43 43 H 1.09001 * 109.87590 * 118.13236 * 22 13 12 44 44 H 1.08994 * 109.87693 * 239.29172 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 6 1.5378 -2.1420 1.2492 7 8 0.8409 -2.5388 0.3393 8 7 1.8639 -2.9720 2.2597 9 6 1.3752 -4.3532 2.2600 10 6 -0.1525 -4.3847 2.1826 11 6 1.8775 -5.1130 3.5160 12 6 3.2953 -5.5491 3.0695 13 7 3.1549 -5.8825 1.6403 14 6 3.9688 -6.7278 0.9345 15 1 4.1284 -6.5671 -0.1215 16 6 4.5886 -7.7913 1.5761 17 7 5.6018 -8.4056 1.0030 18 14 3.9848 -8.3506 3.2530 19 1 4.6497 -7.5487 4.3113 20 1 2.5145 -8.1606 3.3383 21 1 4.3102 -9.7871 3.4425 22 6 2.0002 -5.1524 1.0970 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 3.1300 1.4426 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6768 -1.7488 -1.2493 30 1 1.6767 -0.2073 -2.1393 31 1 3.1301 -0.7207 -1.2495 32 1 1.6768 -0.2074 2.1392 33 1 3.1301 -0.7208 1.2494 34 1 2.4216 -2.6548 2.9872 35 1 -0.5711 -3.9114 3.0707 36 1 -0.4825 -3.8462 1.2941 37 1 -0.4923 -5.4190 2.1277 38 1 1.2501 -5.9793 3.7255 39 1 1.9266 -4.4502 4.3800 40 1 3.6182 -6.4241 3.6334 41 1 4.0028 -4.7301 3.2003 42 1 6.0351 -9.1484 1.4515 43 1 2.3284 -4.4720 0.3112 44 1 1.2700 -5.8570 0.6992 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500182064.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:43 Heat of formation + Delta-G solvation = -38.521555 kcal Electronic energy + Delta-G solvation = -22092.174106 eV Core-core repulsion = 19044.207190 eV Total energy + Delta-G solvation = -3047.966916 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.50003 -39.57738 -37.28429 -35.63035 -33.96584 -32.24484 -30.62558 -28.87228 -28.07812 -27.97064 -27.91245 -25.20480 -22.72070 -22.33630 -20.42781 -19.78877 -19.04256 -17.95615 -17.54915 -16.97651 -16.28675 -15.61085 -15.39217 -15.35476 -15.22089 -14.98008 -14.87577 -14.34708 -13.92623 -13.72383 -13.51137 -13.17751 -13.10633 -12.93513 -12.85766 -12.77416 -12.61255 -12.55700 -12.25256 -12.09870 -11.97262 -11.84785 -11.73798 -11.57120 -11.47998 -11.31895 -10.67164 -10.17703 -9.90290 -8.93363 -8.22729 -5.60206 1.25189 1.38146 1.50378 1.81903 2.30804 2.37820 3.02571 3.28520 3.55230 3.79246 3.82707 3.93496 3.99361 4.01993 4.34771 4.41920 4.50680 4.63066 4.66480 4.71131 4.72236 4.79359 4.83802 4.87766 4.89916 4.91407 4.99000 5.01898 5.05950 5.12926 5.19546 5.22750 5.30270 5.35552 5.42255 5.58754 5.63699 5.71882 5.84103 6.07659 6.72953 6.77761 7.46221 7.50206 8.09238 8.98378 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029802 B = 0.005114 C = 0.004769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.320821 B = 5473.496097 C = 5869.869609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.050 4.050 3 C -0.136 4.136 4 C -0.153 4.153 5 C -0.127 4.127 6 C 0.508 3.492 7 O -0.556 6.556 8 N -0.709 5.709 9 C 0.173 3.827 10 C -0.144 4.144 11 C -0.123 4.123 12 C 0.103 3.897 13 N -0.626 5.626 14 C -0.246 4.246 15 H 0.036 0.964 16 C -0.034 4.034 17 N -0.960 5.960 18 Si 0.970 3.030 19 H -0.262 1.262 20 H -0.259 1.259 21 H -0.310 1.310 22 C 0.136 3.864 23 H 0.060 0.940 24 H 0.049 0.951 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.043 0.957 32 H 0.120 0.880 33 H 0.100 0.900 34 H 0.411 0.589 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.085 0.915 39 H 0.121 0.879 40 H 0.032 0.968 41 H 0.041 0.959 42 H 0.265 0.735 43 H 0.014 0.986 44 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.828 19.657 7.789 23.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.050 4.050 3 C -0.194 4.194 4 C -0.210 4.210 5 C -0.167 4.167 6 C 0.297 3.703 7 O -0.435 6.435 8 N -0.362 5.362 9 C 0.086 3.914 10 C -0.202 4.202 11 C -0.161 4.161 12 C -0.021 4.021 13 N -0.353 5.353 14 C -0.375 4.375 15 H 0.054 0.946 16 C -0.229 4.229 17 N -0.606 5.606 18 Si 0.800 3.200 19 H -0.189 1.189 20 H -0.184 1.184 21 H -0.239 1.239 22 C 0.010 3.990 23 H 0.079 0.921 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.139 0.861 33 H 0.118 0.882 34 H 0.248 0.752 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.103 0.897 39 H 0.139 0.861 40 H 0.049 0.951 41 H 0.059 0.941 42 H 0.074 0.926 43 H 0.032 0.968 44 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -11.171 19.216 7.090 23.330 hybrid contribution 0.693 -0.886 0.163 1.136 sum -10.478 18.330 7.253 22.324 Atomic orbital electron populations 1.22031 0.94447 1.02712 1.01332 1.20264 0.96059 0.95407 0.93282 1.21847 1.01127 0.93810 1.02574 1.22072 0.99869 1.01518 0.97561 1.21831 1.02879 0.90685 1.01276 1.21205 0.79574 0.88639 0.80900 1.90551 1.39096 1.77935 1.35966 1.45983 1.53614 1.10548 1.26024 1.21045 0.94506 0.81366 0.94468 1.21987 0.92097 1.02553 1.03567 1.23109 0.95069 1.00874 0.97031 1.22204 0.97137 0.97715 0.85014 1.44741 1.31036 1.52066 1.07500 1.18438 1.20778 1.04687 0.93555 0.94575 1.26000 0.97397 0.96260 1.03220 1.69937 1.23178 1.25431 1.42038 0.85518 0.79769 0.75156 0.79565 1.18940 1.18425 1.23935 1.21789 0.88303 0.93207 0.95661 0.92105 0.93199 0.92170 0.92330 0.92397 0.91128 0.92735 0.92911 0.93784 0.86144 0.88218 0.75194 0.90107 0.91552 0.92063 0.89673 0.86073 0.95062 0.94112 0.92606 0.96786 0.96189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 8.18 71.98 0.59 -2.46 16 2 C -0.05 -0.98 0.77 -52.18 -0.04 -1.02 16 3 C -0.14 -1.98 8.47 71.98 0.61 -1.37 16 4 C -0.15 -3.88 8.18 71.98 0.59 -3.29 16 5 C -0.13 -2.32 4.77 29.85 0.14 -2.18 16 6 C 0.51 13.30 6.46 87.66 0.57 13.86 16 7 O -0.56 -18.40 8.32 -3.04 -0.03 -18.43 16 8 N -0.71 -17.67 5.14 -417.56 -2.15 -19.82 16 9 C 0.17 5.29 0.81 4.79 0.00 5.30 16 10 C -0.14 -3.88 8.43 71.98 0.61 -3.27 16 11 C -0.12 -3.52 6.08 31.99 0.19 -3.33 16 12 C 0.10 4.11 6.20 86.86 0.54 4.65 16 13 N -0.63 -31.15 3.06 -691.96 -2.12 -33.26 16 14 C -0.25 -14.94 10.56 84.03 0.89 -14.05 16 15 H 0.04 2.48 8.06 -2.91 -0.02 2.45 16 16 C -0.03 -2.04 5.47 84.86 0.46 -1.58 16 17 N -0.96 -62.13 13.97 21.65 0.30 -61.83 16 18 Si 0.97 47.14 24.74 68.60 1.70 48.83 16 19 H -0.26 -11.68 6.61 99.48 0.66 -11.02 16 20 H -0.26 -11.86 7.10 99.48 0.71 -11.15 16 21 H -0.31 -15.23 7.11 99.48 0.71 -14.53 16 22 C 0.14 5.89 6.19 86.73 0.54 6.43 16 23 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.06 1.59 5.51 -2.39 -0.01 1.58 16 26 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.05 1.77 5.51 -2.39 -0.01 1.75 16 30 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.12 1.45 8.14 -2.39 -0.02 1.44 16 33 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.41 7.65 8.49 -92.71 -0.79 6.87 16 35 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.07 2.03 5.97 -2.39 -0.01 2.01 16 37 H 0.06 1.67 8.07 -2.38 -0.02 1.65 16 38 H 0.08 2.47 8.05 -2.39 -0.02 2.45 16 39 H 0.12 2.35 8.07 -2.38 -0.02 2.34 16 40 H 0.03 1.36 2.33 -2.39 -0.01 1.35 16 41 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 42 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 43 H 0.01 0.67 6.90 -2.39 -0.02 0.66 16 44 H 0.02 0.92 7.77 -2.39 -0.02 0.90 16 Total: -1.00 -74.75 329.19 3.53 -71.22 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.14 Total: 15.58 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: 5.69 Total: -2.29 kcal Atomic # 7 Polarization: -110.94 SS G_CDS: -3.96 Total: -114.91 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.03 Total: -18.43 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 1.70 Total: 48.83 kcal Total: -74.75 3.53 -71.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500182064.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.693 kcal (2) G-P(sol) polarization free energy of solvation -74.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds