Wall clock time and date at job start Mon Mar 30 2020 01:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46782 * 2 1 4 4 C 1.52999 * 109.46984 * 240.00402 * 2 1 3 5 5 C 1.52997 * 109.47439 * 120.00016 * 2 1 3 6 6 C 1.50696 * 109.47274 * 59.99956 * 5 2 1 7 7 O 1.21286 * 119.99957 * 0.02562 * 6 5 2 8 8 N 1.34777 * 120.00404 * 179.97438 * 6 5 2 9 9 C 1.46496 * 120.00369 * 180.02562 * 8 6 5 10 10 C 1.53000 * 110.77884 * 56.75982 * 9 8 6 11 11 C 1.55157 * 110.72370 * 180.02562 * 9 8 6 12 12 C 1.54901 * 101.58260 * 82.86166 * 11 9 8 13 13 N 1.47426 * 104.83400 * 37.01041 * 12 11 9 14 14 C 1.36940 * 125.64992 * 155.83232 * 13 12 11 15 15 H 1.07997 * 120.00181 * 180.02562 * 14 13 12 16 16 C 1.38809 * 119.99910 * 0.03099 * 14 13 12 17 17 N 1.31620 * 120.00075 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00178 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46921 * 89.99681 * 18 16 14 20 20 H 1.48498 * 109.47476 * 209.99822 * 18 16 14 21 21 H 1.48502 * 109.46961 * 330.00141 * 18 16 14 22 22 C 1.47019 * 108.70376 * 335.87327 * 13 12 11 23 23 H 1.08995 * 109.47116 * 299.99667 * 1 2 3 24 24 H 1.08994 * 109.47319 * 60.00065 * 1 2 3 25 25 H 1.09009 * 109.46844 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46548 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47150 * 300.00052 * 3 2 1 28 28 H 1.08995 * 109.47023 * 60.00276 * 3 2 1 29 29 H 1.09009 * 109.46803 * 299.99380 * 4 2 1 30 30 H 1.08994 * 109.47474 * 59.99628 * 4 2 1 31 31 H 1.09004 * 109.46787 * 179.97438 * 4 2 1 32 32 H 1.09008 * 109.46999 * 300.00439 * 5 2 1 33 33 H 1.08994 * 109.47596 * 180.02562 * 5 2 1 34 34 H 0.96998 * 119.99443 * 0.02562 * 8 6 5 35 35 H 1.09003 * 109.47456 * 183.23569 * 10 9 8 36 36 H 1.09001 * 109.47438 * 303.24112 * 10 9 8 37 37 H 1.09004 * 109.46958 * 63.24497 * 10 9 8 38 38 H 1.09002 * 111.00633 * 200.94063 * 11 9 8 39 39 H 1.09002 * 110.99939 * 324.74842 * 11 9 8 40 40 H 1.09004 * 110.36831 * 155.84850 * 12 11 9 41 41 H 1.08999 * 110.37045 * 278.17261 * 12 11 9 42 42 H 0.97000 * 120.00003 * 179.97438 * 17 16 14 43 43 H 1.09000 * 109.88042 * 241.64152 * 22 13 12 44 44 H 1.08996 * 109.88551 * 120.47294 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7212 1.2492 6 6 1.5378 -2.1420 1.2492 7 8 0.8409 -2.5389 0.3394 8 7 1.8639 -2.9721 2.2598 9 6 1.3761 -4.3534 2.2595 10 6 1.8024 -5.0794 0.9820 11 6 1.8772 -5.1129 3.5163 12 6 0.8381 -4.6758 4.5787 13 7 -0.4409 -4.6047 3.8488 14 6 -1.6860 -4.7197 4.4072 15 1 -2.5655 -4.6536 3.7840 16 6 -1.8176 -4.9211 5.7743 17 7 -0.7457 -5.0021 6.5338 18 14 -3.5160 -5.0773 6.5362 19 1 -3.9286 -6.5039 6.5375 20 1 -3.4811 -4.5709 7.9317 21 1 -4.4885 -4.2815 5.7449 22 6 -0.1582 -4.3908 2.4220 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0278 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6767 -1.7489 -1.2493 30 1 1.6766 -0.2074 -2.1392 31 1 3.1300 -0.7207 -1.2495 32 1 1.6767 -0.2074 2.1392 33 1 3.1300 -0.7208 1.2494 34 1 2.4216 -2.6548 2.9872 35 1 1.3809 -6.0846 0.9774 36 1 1.4401 -4.5295 0.1134 37 1 2.8900 -5.1414 0.9451 38 1 1.8459 -6.1911 3.3596 39 1 2.8804 -4.7895 3.7940 40 1 0.7783 -5.4150 5.3776 41 1 1.0983 -3.6980 4.9841 42 1 -0.8376 -5.1425 7.4892 43 1 -0.5886 -3.4436 2.0968 44 1 -0.5733 -5.2100 1.8350 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500182065.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:47 Heat of formation + Delta-G solvation = -23.399444 kcal Electronic energy + Delta-G solvation = -22030.329375 eV Core-core repulsion = 18983.018203 eV Total energy + Delta-G solvation = -3047.311172 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.17946 -37.96866 -36.04042 -33.92255 -31.96590 -30.15621 -28.69771 -27.82706 -27.15389 -27.05771 -25.64007 -23.61737 -21.09401 -20.29769 -18.98684 -18.71441 -17.05050 -16.54211 -15.52718 -15.16664 -14.70776 -14.40830 -14.26447 -14.18744 -13.69151 -13.24865 -12.83350 -12.63426 -12.40942 -12.16892 -12.05273 -11.88440 -11.70927 -11.64601 -11.53903 -11.17771 -10.94830 -10.91469 -10.83902 -10.67907 -10.58326 -10.31727 -10.29445 -10.06887 -9.83952 -9.61434 -8.92668 -8.63761 -8.51485 -6.79399 -5.63752 -3.04028 2.99263 3.41440 3.46618 3.48587 3.54564 4.51286 4.71710 4.87584 4.88680 5.15753 5.36221 5.42598 5.49121 5.52463 5.56214 5.60654 5.61891 5.65199 5.77129 5.83019 5.91009 5.96081 6.06979 6.15549 6.19978 6.21328 6.25162 6.29884 6.40301 6.47575 6.53328 6.59985 6.71882 6.78057 6.86142 7.21332 7.46741 7.65290 7.83042 7.95522 8.37082 8.65304 9.24847 9.85714 10.50692 11.40552 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023815 B = 0.005070 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.447868 B = 5521.529842 C = 6065.087506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.049 4.049 3 C -0.142 4.142 4 C -0.152 4.152 5 C -0.134 4.134 6 C 0.516 3.484 7 O -0.531 6.531 8 N -0.710 5.710 9 C 0.159 3.841 10 C -0.151 4.151 11 C -0.147 4.147 12 C 0.153 3.847 13 N -0.604 5.604 14 C -0.217 4.217 15 H 0.076 0.924 16 C -0.013 4.013 17 N -0.925 5.925 18 Si 0.913 3.087 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.282 1.282 22 C 0.138 3.862 23 H 0.045 0.955 24 H 0.046 0.954 25 H 0.087 0.913 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.042 0.958 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.396 0.604 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.047 0.953 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.107 0.893 41 H 0.010 0.990 42 H 0.251 0.749 43 H 0.030 0.970 44 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.605 7.840 -10.574 16.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.049 4.049 3 C -0.199 4.199 4 C -0.209 4.209 5 C -0.174 4.174 6 C 0.303 3.697 7 O -0.410 6.410 8 N -0.360 5.360 9 C 0.073 3.927 10 C -0.209 4.209 11 C -0.186 4.186 12 C 0.028 3.972 13 N -0.330 5.330 14 C -0.346 4.346 15 H 0.094 0.906 16 C -0.208 4.208 17 N -0.574 5.574 18 Si 0.744 3.256 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.208 1.208 22 C 0.012 3.988 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.106 0.894 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.230 0.770 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.125 0.875 41 H 0.028 0.972 42 H 0.062 0.938 43 H 0.048 0.952 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 8.988 7.522 -11.016 16.084 hybrid contribution -0.529 0.262 0.935 1.105 sum 8.459 7.785 -10.081 15.290 Atomic orbital electron populations 1.22109 0.93987 1.04491 1.00488 1.20230 0.96487 0.94134 0.94091 1.21905 1.00595 0.95694 1.01720 1.22103 0.99613 1.03149 0.96036 1.21790 1.01892 0.93379 1.00357 1.20497 0.80136 0.87293 0.81810 1.90512 1.37688 1.76901 1.35868 1.46057 1.53152 1.12075 1.24739 1.21310 0.95240 0.80482 0.95625 1.22064 1.00219 1.00304 0.98353 1.23352 0.99454 0.99860 0.95958 1.21923 0.82164 0.99774 0.93325 1.44504 1.02536 1.84890 1.01079 1.19097 0.83158 1.41238 0.91067 0.90585 1.24751 0.97435 1.02591 0.95982 1.69779 1.26001 1.57145 1.04506 0.86079 0.83290 0.77750 0.78465 1.21610 1.21698 1.20782 1.21597 0.91399 0.98410 0.87421 0.93602 0.93460 0.89386 0.92914 0.92611 0.92750 0.89487 0.93432 0.93875 0.89171 0.89468 0.76983 0.92012 0.90425 0.93395 0.90683 0.91996 0.87512 0.97238 0.93838 0.95157 0.95370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.18 37.16 0.30 -1.73 16 2 C -0.05 -0.57 0.77 -154.51 -0.12 -0.68 16 3 C -0.14 -1.34 8.47 37.16 0.31 -1.02 16 4 C -0.15 -1.79 8.18 37.16 0.30 -1.49 16 5 C -0.13 -1.56 4.77 -27.89 -0.13 -1.70 16 6 C 0.52 7.78 6.46 -10.99 -0.07 7.71 16 7 O -0.53 -9.25 8.32 5.55 0.05 -9.21 16 8 N -0.71 -10.97 5.15 -45.91 -0.24 -11.20 16 9 C 0.16 2.83 0.81 -129.98 -0.11 2.73 16 10 C -0.15 -2.39 8.43 37.16 0.31 -2.07 16 11 C -0.15 -2.68 6.07 -24.59 -0.15 -2.83 16 12 C 0.15 3.63 5.87 -2.53 -0.01 3.61 16 13 N -0.60 -15.68 3.39 -170.08 -0.58 -16.26 16 14 C -0.22 -6.18 10.27 -15.06 -0.15 -6.34 16 15 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 16 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 17 N -0.93 -26.88 10.09 55.49 0.56 -26.32 16 18 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 C 0.14 3.09 6.19 -3.06 -0.02 3.07 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.09 1.42 5.51 -51.92 -0.29 1.13 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.09 1.23 5.51 -51.92 -0.29 0.94 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 1.01 8.14 -51.92 -0.42 0.59 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.40 5.35 8.49 -40.82 -0.35 5.00 16 35 H 0.06 0.96 8.06 -51.93 -0.42 0.54 16 36 H 0.08 1.30 5.97 -51.93 -0.31 0.99 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.07 1.36 8.05 -51.93 -0.42 0.94 16 39 H 0.06 0.95 8.07 -51.93 -0.42 0.54 16 40 H 0.11 2.87 5.87 -51.93 -0.30 2.56 16 41 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.03 0.73 6.90 -51.93 -0.36 0.37 16 44 H 0.03 0.65 7.76 -51.93 -0.40 0.24 16 LS Contribution 333.69 15.07 5.03 5.03 Total: -1.00 -30.61 333.69 -7.58 -38.18 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -7.75 Total: 3.64 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: 0.37 Total: -1.19 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: -0.25 Total: -53.78 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.05 Total: -9.21 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.61 -7.58 -38.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500182065.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.783 kcal (2) G-P(sol) polarization free energy of solvation -30.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds