Wall clock time and date at job start Mon Mar 30 2020 01:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46782 * 2 1 4 4 C 1.52999 * 109.46984 * 240.00402 * 2 1 3 5 5 C 1.52997 * 109.47439 * 120.00016 * 2 1 3 6 6 C 1.50696 * 109.47274 * 59.99956 * 5 2 1 7 7 O 1.21286 * 119.99957 * 0.02562 * 6 5 2 8 8 N 1.34777 * 120.00404 * 179.97438 * 6 5 2 9 9 C 1.46496 * 120.00369 * 180.02562 * 8 6 5 10 10 C 1.53000 * 110.77884 * 56.75982 * 9 8 6 11 11 C 1.55157 * 110.72370 * 180.02562 * 9 8 6 12 12 C 1.54901 * 101.58260 * 82.86166 * 11 9 8 13 13 N 1.47426 * 104.83400 * 37.01041 * 12 11 9 14 14 C 1.36940 * 125.64992 * 155.83232 * 13 12 11 15 15 H 1.07997 * 120.00181 * 180.02562 * 14 13 12 16 16 C 1.38809 * 119.99910 * 0.03099 * 14 13 12 17 17 N 1.31620 * 120.00075 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00178 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46921 * 89.99681 * 18 16 14 20 20 H 1.48498 * 109.47476 * 209.99822 * 18 16 14 21 21 H 1.48502 * 109.46961 * 330.00141 * 18 16 14 22 22 C 1.47019 * 108.70376 * 335.87327 * 13 12 11 23 23 H 1.08995 * 109.47116 * 299.99667 * 1 2 3 24 24 H 1.08994 * 109.47319 * 60.00065 * 1 2 3 25 25 H 1.09009 * 109.46844 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46548 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47150 * 300.00052 * 3 2 1 28 28 H 1.08995 * 109.47023 * 60.00276 * 3 2 1 29 29 H 1.09009 * 109.46803 * 299.99380 * 4 2 1 30 30 H 1.08994 * 109.47474 * 59.99628 * 4 2 1 31 31 H 1.09004 * 109.46787 * 179.97438 * 4 2 1 32 32 H 1.09008 * 109.46999 * 300.00439 * 5 2 1 33 33 H 1.08994 * 109.47596 * 180.02562 * 5 2 1 34 34 H 0.96998 * 119.99443 * 0.02562 * 8 6 5 35 35 H 1.09003 * 109.47456 * 183.23569 * 10 9 8 36 36 H 1.09001 * 109.47438 * 303.24112 * 10 9 8 37 37 H 1.09004 * 109.46958 * 63.24497 * 10 9 8 38 38 H 1.09002 * 111.00633 * 200.94063 * 11 9 8 39 39 H 1.09002 * 110.99939 * 324.74842 * 11 9 8 40 40 H 1.09004 * 110.36831 * 155.84850 * 12 11 9 41 41 H 1.08999 * 110.37045 * 278.17261 * 12 11 9 42 42 H 0.97000 * 120.00003 * 179.97438 * 17 16 14 43 43 H 1.09000 * 109.88042 * 241.64152 * 22 13 12 44 44 H 1.08996 * 109.88551 * 120.47294 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7212 1.2492 6 6 1.5378 -2.1420 1.2492 7 8 0.8409 -2.5389 0.3394 8 7 1.8639 -2.9721 2.2598 9 6 1.3761 -4.3534 2.2595 10 6 1.8024 -5.0794 0.9820 11 6 1.8772 -5.1129 3.5163 12 6 0.8381 -4.6758 4.5787 13 7 -0.4409 -4.6047 3.8488 14 6 -1.6860 -4.7197 4.4072 15 1 -2.5655 -4.6536 3.7840 16 6 -1.8176 -4.9211 5.7743 17 7 -0.7457 -5.0021 6.5338 18 14 -3.5160 -5.0773 6.5362 19 1 -3.9286 -6.5039 6.5375 20 1 -3.4811 -4.5709 7.9317 21 1 -4.4885 -4.2815 5.7449 22 6 -0.1582 -4.3908 2.4220 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0278 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6767 -1.7489 -1.2493 30 1 1.6766 -0.2074 -2.1392 31 1 3.1300 -0.7207 -1.2495 32 1 1.6767 -0.2074 2.1392 33 1 3.1300 -0.7208 1.2494 34 1 2.4216 -2.6548 2.9872 35 1 1.3809 -6.0846 0.9774 36 1 1.4401 -4.5295 0.1134 37 1 2.8900 -5.1414 0.9451 38 1 1.8459 -6.1911 3.3596 39 1 2.8804 -4.7895 3.7940 40 1 0.7783 -5.4150 5.3776 41 1 1.0983 -3.6980 4.9841 42 1 -0.8376 -5.1425 7.4892 43 1 -0.5886 -3.4436 2.0968 44 1 -0.5733 -5.2100 1.8350 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500182065.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:46 Heat of formation + Delta-G solvation = -42.422960 kcal Electronic energy + Delta-G solvation = -22031.154296 eV Core-core repulsion = 18983.018203 eV Total energy + Delta-G solvation = -3048.136094 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.43390 -39.39840 -37.22899 -35.59525 -33.66070 -31.83817 -30.40386 -28.85877 -28.06230 -27.97099 -27.53077 -25.38215 -22.46942 -22.06471 -20.36934 -19.76481 -18.91424 -17.84509 -17.09102 -16.68805 -16.28613 -15.63941 -15.52332 -15.30928 -15.20073 -14.75840 -14.36210 -14.03296 -13.71099 -13.65576 -13.29445 -13.18647 -12.94469 -12.85583 -12.78751 -12.78162 -12.61238 -12.24550 -12.07102 -12.03593 -11.95669 -11.87167 -11.65020 -11.58143 -11.48221 -11.41255 -10.75533 -10.15687 -9.85767 -8.88771 -7.79446 -5.22887 1.44538 1.46038 1.54834 1.82411 2.34609 2.48033 3.29991 3.63001 3.72199 3.80338 3.95243 3.98789 4.05727 4.20552 4.35774 4.63680 4.64951 4.67916 4.70324 4.70724 4.85179 4.87644 4.89438 4.91256 4.92988 5.01662 5.03687 5.11485 5.12898 5.22483 5.30653 5.36441 5.41567 5.42530 5.59025 5.61788 5.66443 5.78488 5.87045 6.30559 6.76694 7.10781 7.48473 7.77041 8.40514 9.21861 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023815 B = 0.005070 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.447868 B = 5521.529842 C = 6065.087506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.049 4.049 3 C -0.136 4.136 4 C -0.148 4.148 5 C -0.128 4.128 6 C 0.508 3.492 7 O -0.557 6.557 8 N -0.709 5.709 9 C 0.172 3.828 10 C -0.141 4.141 11 C -0.129 4.129 12 C 0.156 3.844 13 N -0.623 5.623 14 C -0.243 4.243 15 H 0.069 0.931 16 C -0.059 4.059 17 N -0.944 5.944 18 Si 0.977 3.023 19 H -0.283 1.283 20 H -0.289 1.289 21 H -0.277 1.277 22 C 0.138 3.862 23 H 0.042 0.958 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.118 0.882 34 H 0.408 0.592 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.074 0.926 41 H -0.006 1.006 42 H 0.249 0.751 43 H 0.007 0.993 44 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.308 8.762 -11.001 18.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.050 4.050 3 C -0.193 4.193 4 C -0.205 4.205 5 C -0.168 4.168 6 C 0.297 3.703 7 O -0.436 6.436 8 N -0.361 5.361 9 C 0.085 3.915 10 C -0.199 4.199 11 C -0.167 4.167 12 C 0.031 3.969 13 N -0.349 5.349 14 C -0.372 4.372 15 H 0.087 0.913 16 C -0.252 4.252 17 N -0.593 5.593 18 Si 0.805 3.195 19 H -0.210 1.210 20 H -0.215 1.215 21 H -0.202 1.202 22 C 0.012 3.988 23 H 0.062 0.938 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.115 0.885 33 H 0.136 0.864 34 H 0.243 0.757 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.118 0.882 40 H 0.092 0.908 41 H 0.011 0.989 42 H 0.058 0.942 43 H 0.025 0.975 44 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 10.713 8.458 -11.457 17.820 hybrid contribution -1.122 -0.011 1.041 1.530 sum 9.591 8.447 -10.416 16.487 Atomic orbital electron populations 1.22062 0.95814 1.02287 1.00760 1.20260 0.94984 0.95734 0.93988 1.21847 1.01612 0.93715 1.02164 1.22030 1.00555 1.01528 0.96386 1.21837 1.03677 0.90596 1.00654 1.21187 0.79539 0.88499 0.81084 1.90529 1.38616 1.77608 1.36855 1.46017 1.53331 1.11286 1.25453 1.21076 0.91746 0.82216 0.96480 1.21968 1.01872 0.99678 0.96416 1.23195 0.99524 1.00181 0.93842 1.21739 0.83018 0.97994 0.94133 1.44782 1.02610 1.84808 1.02720 1.19368 0.84339 1.41842 0.91678 0.91341 1.25530 1.01045 1.02398 0.96258 1.70014 1.27596 1.57356 1.04381 0.85101 0.79216 0.77774 0.77361 1.21001 1.21486 1.20215 1.21678 0.95126 0.96576 0.85423 0.93840 0.92682 0.92718 0.91227 0.92184 0.92388 0.92172 0.92977 0.92227 0.88511 0.86386 0.75652 0.91995 0.91588 0.90634 0.90259 0.88189 0.90775 0.98852 0.94169 0.97498 0.96484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.98 8.18 71.98 0.59 -3.39 16 2 C -0.05 -1.04 0.77 -52.18 -0.04 -1.08 16 3 C -0.14 -2.15 8.47 71.98 0.61 -1.54 16 4 C -0.15 -3.23 8.18 71.98 0.59 -2.64 16 5 C -0.13 -2.68 4.77 29.85 0.14 -2.54 16 6 C 0.51 14.82 6.46 87.66 0.57 15.38 16 7 O -0.56 -19.53 8.32 -3.05 -0.03 -19.56 16 8 N -0.71 -20.86 5.15 -417.56 -2.15 -23.01 16 9 C 0.17 5.93 0.81 4.80 0.00 5.94 16 10 C -0.14 -4.22 8.43 71.98 0.61 -3.61 16 11 C -0.13 -4.48 6.07 31.98 0.19 -4.29 16 12 C 0.16 7.47 5.87 86.85 0.51 7.98 16 13 N -0.62 -33.19 3.39 -692.00 -2.35 -35.54 16 14 C -0.24 -14.24 10.27 84.03 0.86 -13.37 16 15 H 0.07 3.98 7.83 -2.91 -0.02 3.95 16 16 C -0.06 -3.42 5.49 84.86 0.47 -2.95 16 17 N -0.94 -55.81 10.09 21.65 0.22 -55.59 16 18 Si 0.98 46.49 29.55 68.60 2.03 48.52 16 19 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 20 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 22 C 0.14 6.32 6.19 86.73 0.54 6.86 16 23 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.05 1.82 5.51 -2.38 -0.01 1.80 16 26 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 1.67 5.51 -2.38 -0.01 1.66 16 30 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 33 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.41 10.07 8.49 -92.71 -0.79 9.28 16 35 H 0.06 1.84 8.06 -2.39 -0.02 1.82 16 36 H 0.07 2.16 5.97 -2.39 -0.01 2.15 16 37 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.08 2.72 8.05 -2.39 -0.02 2.70 16 39 H 0.10 2.75 8.07 -2.39 -0.02 2.73 16 40 H 0.07 4.07 5.87 -2.38 -0.01 4.05 16 41 H -0.01 -0.33 8.14 -2.39 -0.02 -0.34 16 42 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 43 H 0.01 0.35 6.90 -2.39 -0.02 0.33 16 44 H 0.02 0.81 7.76 -2.39 -0.02 0.79 16 Total: -1.00 -68.41 333.69 3.54 -64.87 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.18 Total: 19.57 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: 5.64 Total: 0.74 kcal Atomic # 7 Polarization: -109.86 SS G_CDS: -4.28 Total: -114.14 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.03 Total: -19.56 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -68.41 3.54 -64.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500182065.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.448 kcal (2) G-P(sol) polarization free energy of solvation -68.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds