Wall clock time and date at job start Mon Mar 30 2020 01:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36935 * 120.00281 * 2 1 4 4 H 1.07996 * 120.00695 * 214.05440 * 3 2 1 5 5 C 1.38821 * 119.99791 * 34.05433 * 3 2 1 6 6 N 1.31624 * 119.99732 * 5.36642 * 5 3 2 7 7 Si 1.86799 * 120.00157 * 185.36266 * 5 3 2 8 8 H 1.48508 * 109.46817 * 89.99986 * 7 5 3 9 9 H 1.48502 * 109.47190 * 209.99946 * 7 5 3 10 10 H 1.48499 * 109.46910 * 330.00303 * 7 5 3 11 11 C 1.46503 * 119.99966 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.46975 * 89.99732 * 11 2 1 13 13 C 1.53003 * 109.46769 * 179.97438 * 12 11 2 14 14 N 1.46497 * 109.47142 * 180.02562 * 13 12 11 15 15 C 1.46507 * 120.00039 * 269.99671 * 14 13 12 16 16 C 1.34775 * 120.00015 * 90.00150 * 14 13 12 17 17 O 1.21275 * 120.00403 * 5.71091 * 16 14 13 18 18 C 1.50707 * 120.00029 * 185.70857 * 16 14 13 19 19 C 1.52998 * 112.84975 * 294.36380 * 18 16 14 20 20 C 1.53780 * 113.61070 * 65.55950 * 18 16 14 21 21 C 1.53775 * 87.08155 * 89.20016 * 20 18 16 22 22 C 1.53779 * 87.17476 * 25.38910 * 21 20 18 23 23 H 1.09001 * 109.47359 * 274.89220 * 1 2 3 24 24 H 1.09003 * 109.46827 * 34.88982 * 1 2 3 25 25 H 1.08996 * 109.47359 * 154.88583 * 1 2 3 26 26 H 0.97000 * 119.99770 * 179.97438 * 6 5 3 27 27 H 1.08996 * 109.46810 * 329.99838 * 11 2 1 28 28 H 1.09000 * 109.46670 * 209.99916 * 11 2 1 29 29 H 1.08996 * 109.47265 * 60.00384 * 12 11 2 30 30 H 1.09000 * 109.47571 * 299.99631 * 12 11 2 31 31 H 1.09007 * 109.47281 * 59.99875 * 13 12 11 32 32 H 1.08998 * 109.47528 * 300.00001 * 13 12 11 33 33 H 1.08996 * 109.47610 * 264.99753 * 15 14 13 34 34 H 1.08999 * 109.46590 * 24.99908 * 15 14 13 35 35 H 1.09002 * 109.46872 * 144.99576 * 15 14 13 36 36 H 1.09000 * 109.46933 * 186.34340 * 19 18 16 37 37 H 1.08995 * 109.47067 * 306.34227 * 19 18 16 38 38 H 1.09000 * 109.47277 * 66.34209 * 19 18 16 39 39 H 1.09003 * 113.61860 * 334.64448 * 20 18 16 40 40 H 1.09007 * 113.61143 * 203.75061 * 20 18 16 41 41 H 1.09006 * 113.61446 * 139.98302 * 21 20 18 42 42 H 1.09000 * 113.61527 * 270.79271 * 21 20 18 43 43 H 1.09005 * 113.61555 * 89.15453 * 22 21 20 44 44 H 1.08994 * 113.61438 * 220.06156 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0908 1.2661 -0.5237 5 6 1.6342 2.2850 0.6732 6 7 0.5429 2.1601 1.3985 7 14 2.4892 3.9412 0.5500 8 1 1.9361 4.6994 -0.6010 9 1 2.2652 4.7083 1.8017 10 1 3.9460 3.7326 0.3513 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7098 -1.4433 13 6 3.2180 -3.0345 -1.4438 14 7 3.4626 -3.4566 -2.8251 15 6 2.4865 -4.3025 -3.5165 16 6 4.5857 -3.0667 -3.4600 17 8 5.4417 -2.4545 -2.8573 18 6 4.7781 -3.3917 -4.9190 19 6 4.9030 -4.8937 -5.1817 20 6 3.7734 -2.6858 -5.8449 21 6 4.7777 -1.5237 -5.9186 22 6 5.8753 -2.5521 -5.5983 23 1 -0.3634 0.0876 1.0239 24 1 -0.3633 0.8430 -0.5878 25 1 -0.3634 -0.9305 -0.4361 26 1 0.1828 2.9280 1.8692 27 1 1.6084 -2.0286 0.5129 28 1 3.1499 -1.1386 0.5133 29 1 3.0415 -0.9500 -1.9568 30 1 1.5000 -1.8400 -1.9572 31 1 2.6293 -3.7946 -0.9301 32 1 4.1704 -2.9040 -0.9301 33 1 2.7790 -5.3481 -3.4202 34 1 1.5017 -4.1583 -3.0721 35 1 2.4525 -4.0304 -4.5714 36 1 5.1515 -5.0598 -6.2299 37 1 5.6897 -5.3085 -4.5516 38 1 3.9567 -5.3829 -4.9507 39 1 2.8367 -2.4230 -5.3534 40 1 3.6245 -3.1954 -6.7969 41 1 4.8664 -1.0856 -6.9128 42 1 4.6385 -0.7760 -5.1377 43 1 6.3021 -3.0250 -6.4828 44 1 6.6329 -2.1814 -4.9081 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502363166.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:54 Heat of formation + Delta-G solvation = -18.244716 kcal Electronic energy + Delta-G solvation = -21440.027833 eV Core-core repulsion = 18392.940186 eV Total energy + Delta-G solvation = -3047.087646 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.87730 -38.80796 -37.79913 -36.73728 -34.12753 -32.25431 -30.77956 -28.14020 -27.87749 -27.16680 -26.54435 -24.81251 -23.57231 -22.12209 -21.58210 -19.45203 -18.73311 -17.54257 -17.24691 -16.84502 -16.74186 -15.96320 -15.66174 -15.53931 -15.04181 -14.68411 -14.62001 -14.47341 -14.19748 -13.79282 -13.38218 -13.35990 -13.22440 -13.06774 -12.88186 -12.78272 -12.55386 -12.53679 -12.28616 -12.20978 -12.16054 -11.91907 -11.86206 -11.43845 -11.24819 -11.16478 -10.72771 -10.62644 -9.67573 -8.64534 -7.86501 -5.48925 1.40562 1.41290 1.51531 1.58590 2.03667 2.45799 3.24539 3.39580 3.52139 3.59322 3.70676 3.88128 3.98215 4.11065 4.30231 4.36091 4.49529 4.50866 4.59182 4.68788 4.71835 4.75073 4.79942 4.80892 4.82719 4.85571 4.91633 4.93771 5.00285 5.14437 5.19308 5.19763 5.25089 5.30922 5.45300 5.46273 5.59189 5.60921 5.67859 6.35541 6.42313 7.14119 7.18077 7.83209 8.30409 9.13131 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023207 B = 0.004470 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.217955 B = 6263.002490 C = 6909.093934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.172 3.828 2 N -0.620 5.620 3 C -0.272 4.272 4 H 0.049 0.951 5 C -0.040 4.040 6 N -0.931 5.931 7 Si 0.965 3.035 8 H -0.281 1.281 9 H -0.285 1.285 10 H -0.275 1.275 11 C 0.153 3.847 12 C -0.126 4.126 13 C 0.122 3.878 14 N -0.611 5.611 15 C 0.063 3.937 16 C 0.524 3.476 17 O -0.592 6.592 18 C -0.110 4.110 19 C -0.132 4.132 20 C -0.113 4.113 21 C -0.152 4.152 22 C -0.119 4.119 23 H 0.010 0.990 24 H 0.007 0.993 25 H 0.037 0.963 26 H 0.252 0.748 27 H 0.060 0.940 28 H 0.030 0.970 29 H 0.019 0.981 30 H 0.061 0.939 31 H 0.107 0.893 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.047 0.953 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.129 0.871 41 H 0.090 0.910 42 H 0.042 0.958 43 H 0.119 0.881 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.828 -17.966 -16.894 24.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.344 5.344 3 C -0.403 4.403 4 H 0.067 0.933 5 C -0.236 4.236 6 N -0.576 5.576 7 Si 0.792 3.208 8 H -0.208 1.208 9 H -0.211 1.211 10 H -0.200 1.200 11 C 0.027 3.973 12 C -0.167 4.167 13 C -0.002 4.002 14 N -0.343 5.343 15 C -0.078 4.078 16 C 0.313 3.687 17 O -0.472 6.472 18 C -0.113 4.113 19 C -0.189 4.189 20 C -0.150 4.150 21 C -0.190 4.190 22 C -0.157 4.157 23 H 0.028 0.972 24 H 0.026 0.974 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.079 0.921 28 H 0.049 0.951 29 H 0.038 0.962 30 H 0.080 0.920 31 H 0.126 0.874 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.066 0.934 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.147 0.853 41 H 0.109 0.891 42 H 0.060 0.940 43 H 0.138 0.862 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.142 -17.559 -16.455 24.418 hybrid contribution 0.399 1.568 0.593 1.723 sum 4.540 -15.990 -15.863 22.977 Atomic orbital electron populations 1.20587 0.82857 0.96027 0.97761 1.44024 1.02077 1.01567 1.86736 1.19269 1.05002 0.89869 1.26132 0.93304 1.26010 0.98604 1.02461 0.96509 1.70145 1.23511 1.30201 1.33768 0.85322 0.78494 0.79879 0.77078 1.20788 1.21085 1.20014 1.20798 0.95286 0.87283 0.93976 1.22255 0.99217 0.95980 0.99265 1.21403 1.00156 0.96089 0.82505 1.47942 1.21057 1.51018 1.14246 1.22357 0.92127 0.94513 0.98792 1.20806 0.80830 0.77441 0.89605 1.90666 1.44369 1.43062 1.69094 1.21959 1.00736 0.99117 0.89465 1.21848 1.03281 0.90161 1.03582 1.23096 0.95966 0.95847 1.00080 1.22831 0.97476 0.96780 1.01878 1.22973 0.95813 0.96448 1.00437 0.97171 0.97438 0.94438 0.93928 0.92140 0.95110 0.96236 0.92014 0.87440 0.92375 0.90139 0.89891 0.89097 0.88904 0.93358 0.89779 0.91586 0.85299 0.89092 0.93952 0.86241 0.93377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.76 9.03 127.77 1.15 9.91 16 2 N -0.62 -33.24 2.89 -726.94 -2.10 -35.34 16 3 C -0.27 -16.19 9.55 84.04 0.80 -15.39 16 4 H 0.05 2.97 7.83 -2.91 -0.02 2.95 16 5 C -0.04 -2.34 5.26 84.86 0.45 -1.89 16 6 N -0.93 -56.98 11.02 21.65 0.24 -56.74 16 7 Si 0.96 47.46 29.56 68.60 2.03 49.49 16 8 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 9 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 10 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 11 C 0.15 6.63 5.65 86.38 0.49 7.12 16 12 C -0.13 -4.70 5.86 30.59 0.18 -4.52 16 13 C 0.12 3.62 5.43 86.38 0.47 4.09 16 14 N -0.61 -15.73 2.87 -846.74 -2.43 -18.17 16 15 C 0.06 0.96 8.79 127.77 1.12 2.08 16 16 C 0.52 15.77 6.38 87.66 0.56 16.33 16 17 O -0.59 -24.27 15.50 -3.01 -0.05 -24.32 16 18 C -0.11 -2.22 0.71 -52.34 -0.04 -2.26 16 19 C -0.13 -1.69 8.77 71.98 0.63 -1.06 16 20 C -0.11 -1.87 5.95 31.12 0.19 -1.68 16 21 C -0.15 -3.31 7.80 31.12 0.24 -3.07 16 22 C -0.12 -2.51 7.11 31.18 0.22 -2.29 16 23 H 0.01 0.56 7.17 -2.39 -0.02 0.54 16 24 H 0.01 0.38 7.84 -2.39 -0.02 0.36 16 25 H 0.04 1.56 8.03 -2.39 -0.02 1.55 16 26 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 27 H 0.06 2.29 8.07 -2.39 -0.02 2.27 16 28 H 0.03 1.42 8.04 -2.39 -0.02 1.40 16 29 H 0.02 0.86 8.14 -2.39 -0.02 0.85 16 30 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.11 2.45 8.07 -2.38 -0.02 2.43 16 32 H 0.06 2.02 7.35 -2.39 -0.02 2.00 16 33 H 0.08 0.85 7.25 -2.39 -0.02 0.84 16 34 H 0.08 1.14 8.03 -2.39 -0.02 1.13 16 35 H 0.09 1.12 4.35 -2.39 -0.01 1.11 16 36 H 0.09 0.74 8.05 -2.39 -0.02 0.72 16 37 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.08 0.78 5.36 -2.39 -0.01 0.77 16 39 H 0.07 1.24 6.82 -2.39 -0.02 1.22 16 40 H 0.13 1.20 8.10 -2.38 -0.02 1.18 16 41 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 42 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.12 1.68 8.04 -2.38 -0.02 1.66 16 44 H 0.05 1.35 7.35 -2.39 -0.02 1.33 16 Total: -1.00 -77.24 344.26 5.10 -72.14 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: 0.95 Total: 5.57 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: 6.47 Total: 7.37 kcal Atomic # 7 Polarization: -105.95 SS G_CDS: -4.29 Total: -110.25 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.05 Total: -24.32 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Total: -77.24 5.10 -72.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502363166.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.892 kcal (2) G-P(sol) polarization free energy of solvation -77.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds