Wall clock time and date at job start Mon Mar 30 2020 01:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 120.00164 * 2 1 4 4 C 1.52990 * 109.47714 * 270.00650 * 3 2 1 5 5 C 1.53000 * 109.47095 * 299.99753 * 4 3 2 6 6 C 1.53004 * 109.47326 * 59.99473 * 4 3 2 7 7 C 1.53002 * 109.47377 * 179.97438 * 4 3 2 8 8 N 1.46497 * 109.47089 * 180.02562 * 7 4 3 9 9 C 1.36938 * 119.99893 * 180.02562 * 8 7 4 10 10 H 1.08003 * 120.00008 * 359.97438 * 9 8 7 11 11 C 1.38818 * 119.99983 * 180.02562 * 9 8 7 12 12 N 1.31621 * 120.00001 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99841 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46621 * 59.99945 * 13 11 9 15 15 H 1.48494 * 109.46765 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.46992 * 300.00004 * 13 11 9 17 17 C 1.34778 * 120.00375 * 180.02562 * 2 1 3 18 18 O 1.21277 * 120.00220 * 175.79501 * 17 2 1 19 19 C 1.50703 * 119.99675 * 355.79265 * 17 2 1 20 20 C 1.53003 * 115.54745 * 67.10304 * 19 17 2 21 21 C 1.53001 * 117.50285 * 281.43542 * 19 17 2 22 22 C 1.52992 * 117.50051 * 212.77369 * 19 17 2 23 23 H 1.08996 * 109.47380 * 95.32181 * 1 2 3 24 24 H 1.09004 * 109.47072 * 215.32327 * 1 2 3 25 25 H 1.09000 * 109.47100 * 335.32343 * 1 2 3 26 26 H 1.09000 * 109.47351 * 149.99990 * 3 2 1 27 27 H 1.09006 * 109.46543 * 30.00702 * 3 2 1 28 28 H 1.09004 * 109.47082 * 60.00124 * 5 4 3 29 29 H 1.09003 * 109.47291 * 179.97438 * 5 4 3 30 30 H 1.08995 * 109.47050 * 300.00146 * 5 4 3 31 31 H 1.09006 * 109.46837 * 60.00006 * 6 4 3 32 32 H 1.09002 * 109.47054 * 179.97438 * 6 4 3 33 33 H 1.08995 * 109.47248 * 300.00394 * 6 4 3 34 34 H 1.09006 * 109.46800 * 300.00003 * 7 4 3 35 35 H 1.08995 * 109.47023 * 59.99698 * 7 4 3 36 36 H 0.96996 * 120.00262 * 359.97438 * 8 7 4 37 37 H 0.96995 * 119.99769 * 180.02562 * 12 11 9 38 38 H 1.08996 * 109.47263 * 62.57800 * 20 19 17 39 39 H 1.09010 * 109.47027 * 182.58159 * 20 19 17 40 40 H 1.09005 * 109.47364 * 302.57554 * 20 19 17 41 41 H 1.09003 * 117.49216 * 359.97438 * 21 19 17 42 42 H 1.08994 * 117.50090 * 145.01757 * 21 19 17 43 43 H 1.09009 * 117.49853 * 214.98006 * 22 19 17 44 44 H 1.08996 * 117.49993 * 0.02562 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7106 -1.4424 5 6 3.2793 0.6444 -2.1638 6 6 1.1155 1.8935 -2.1636 7 6 3.2169 3.0359 -1.4423 8 7 3.4605 3.4592 -2.8234 9 6 4.1336 4.6253 -3.0736 10 1 4.4845 5.2330 -2.2526 11 6 4.3639 5.0267 -4.3823 12 7 3.9357 4.2863 -5.3828 13 14 5.2814 6.6177 -4.7235 14 1 6.6392 6.5437 -4.1266 15 1 5.3963 6.8180 -6.1904 16 1 4.5387 7.7556 -4.1246 17 6 2.1389 -1.1672 -0.0005 18 8 3.3493 -1.1685 -0.0775 19 6 1.3885 -2.4706 0.0947 20 6 0.5146 -2.8185 -1.1121 21 6 0.8884 -2.8988 1.4758 22 6 2.0702 -3.6262 0.8298 23 1 -0.3634 -0.0953 -1.0232 24 1 -0.3633 -0.8385 0.5942 25 1 -0.3633 0.9338 0.4290 26 1 3.1499 1.1384 0.5138 27 1 1.6084 2.0283 0.5140 28 1 2.7343 -0.2996 -2.1639 29 1 3.4606 0.9589 -3.1916 30 1 4.2317 0.5140 -1.6500 31 1 0.5264 2.6531 -1.6496 32 1 1.2972 2.2088 -3.1911 33 1 0.5706 0.9496 -2.1637 34 1 2.6274 3.7953 -0.9284 35 1 4.1693 2.9059 -0.9284 36 1 3.1456 2.9133 -3.5607 37 1 4.0970 4.5667 -6.2972 38 1 1.1432 -2.9324 -1.9952 39 1 -0.0151 -3.7517 -0.9202 40 1 -0.2072 -2.0192 -1.2806 41 1 1.1027 -2.2378 2.3157 42 1 -0.0628 -3.4286 1.5247 43 1 1.8958 -4.6345 0.4540 44 1 3.0613 -3.4437 1.2450 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505813235.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:34 Heat of formation + Delta-G solvation = -1.188660 kcal Electronic energy + Delta-G solvation = -21752.531309 eV Core-core repulsion = 18706.183269 eV Total energy + Delta-G solvation = -3046.348040 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.53293 -37.88990 -36.45049 -35.03463 -32.98286 -30.19260 -29.07699 -27.71025 -26.70876 -25.99427 -25.38977 -23.04234 -22.70595 -21.73722 -18.80701 -18.25915 -17.17794 -16.75784 -16.17489 -15.66488 -15.09622 -14.58662 -14.13739 -13.91238 -13.66576 -13.56950 -13.11965 -12.93217 -12.69472 -12.55486 -12.43109 -12.39762 -12.17174 -11.99336 -11.77869 -11.17152 -11.06177 -10.94191 -10.75513 -10.71951 -10.63995 -10.22130 -10.20692 -10.17833 -9.89310 -9.62103 -9.50441 -8.79598 -8.47720 -6.82569 -5.69605 -2.96899 2.61526 2.99219 3.48510 3.49774 3.52570 3.53829 4.33396 4.47493 4.59474 4.65992 4.77748 5.03643 5.19858 5.21607 5.32829 5.37861 5.41307 5.46290 5.50181 5.56501 5.63356 5.64625 5.65847 5.80736 5.87198 5.93082 6.00361 6.03079 6.18554 6.25494 6.37443 6.52746 6.61455 6.70791 6.81175 6.85738 7.01917 7.07319 7.43859 7.75977 8.27051 8.50079 9.60928 10.20792 10.55726 11.53558 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.041023 B = 0.003925 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.381324 B = 7131.773436 C = 7172.865953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.604 5.604 3 C 0.128 3.872 4 C -0.085 4.085 5 C -0.121 4.121 6 C -0.135 4.135 7 C 0.165 3.835 8 N -0.727 5.727 9 C -0.237 4.237 10 H 0.069 0.931 11 C -0.015 4.015 12 N -0.935 5.935 13 Si 0.907 3.093 14 H -0.287 1.287 15 H -0.292 1.292 16 H -0.287 1.287 17 C 0.547 3.453 18 O -0.526 6.526 19 C -0.156 4.156 20 C -0.115 4.115 21 C -0.162 4.162 22 C -0.146 4.146 23 H 0.060 0.940 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.038 0.962 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.047 0.953 32 H 0.065 0.935 33 H 0.045 0.955 34 H 0.017 0.983 35 H 0.019 0.981 36 H 0.385 0.615 37 H 0.255 0.745 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.434 -14.942 13.398 23.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.336 5.336 3 C 0.005 3.995 4 C -0.087 4.087 5 C -0.179 4.179 6 C -0.193 4.193 7 C 0.037 3.963 8 N -0.373 5.373 9 C -0.368 4.368 10 H 0.087 0.913 11 C -0.211 4.211 12 N -0.584 5.584 13 Si 0.738 3.262 14 H -0.213 1.213 15 H -0.218 1.218 16 H -0.214 1.214 17 C 0.334 3.666 18 O -0.402 6.402 19 C -0.160 4.160 20 C -0.172 4.172 21 C -0.200 4.200 22 C -0.183 4.183 23 H 0.078 0.922 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.034 0.966 35 H 0.036 0.964 36 H 0.220 0.780 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.114 0.886 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.700 -14.771 13.372 22.616 hybrid contribution 0.304 0.825 -0.568 1.047 sum -10.396 -13.946 12.805 21.599 Atomic orbital electron populations 1.21976 0.79869 1.02888 1.01853 1.47683 1.06793 1.05950 1.73217 1.21602 0.97207 0.83477 0.97203 1.21106 0.96423 0.96907 0.94241 1.21713 0.99282 0.96240 1.00642 1.21878 0.95752 0.99911 1.01714 1.20584 0.95655 0.91237 0.88829 1.42380 1.68147 1.25727 1.01003 1.19210 1.27697 0.98173 0.91722 0.91344 1.24714 1.01825 0.98958 0.95567 1.69650 1.51688 1.38954 0.98118 0.86270 0.79731 0.83430 0.76784 1.21340 1.21753 1.21369 1.19442 0.87195 0.83906 0.76011 1.90726 1.13916 1.86918 1.48601 1.21415 1.03807 0.94964 0.95778 1.21383 0.98502 1.01803 0.95495 1.23100 0.99271 1.03417 0.94182 1.23012 0.97806 0.95692 1.01839 0.92207 0.91241 0.90956 0.90058 0.90658 0.94303 0.92352 0.92582 0.93351 0.91568 0.93595 0.96564 0.96365 0.78001 0.93567 0.91580 0.91653 0.91299 0.88569 0.87981 0.88056 0.87927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.68 7.95 59.85 0.48 1.16 16 2 N -0.60 -7.48 2.40 -181.58 -0.44 -7.91 16 3 C 0.13 1.83 4.62 -4.05 -0.02 1.81 16 4 C -0.09 -1.48 0.60 -154.51 -0.09 -1.57 16 5 C -0.12 -2.33 6.91 37.16 0.26 -2.07 16 6 C -0.14 -2.20 7.71 37.16 0.29 -1.91 16 7 C 0.17 3.49 5.15 -4.04 -0.02 3.47 16 8 N -0.73 -19.00 5.00 -59.91 -0.30 -19.30 16 9 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 10 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 11 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 12 N -0.94 -28.90 13.06 55.49 0.72 -28.17 16 13 Si 0.91 22.96 29.55 -169.99 -5.02 17.93 16 14 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 15 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 16 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 17 C 0.55 7.56 5.49 -10.98 -0.06 7.50 16 18 O -0.53 -9.39 14.20 5.56 0.08 -9.31 16 19 C -0.16 -1.60 1.39 -155.66 -0.22 -1.81 16 20 C -0.11 -0.99 9.46 37.16 0.35 -0.63 16 21 C -0.16 -1.26 9.01 -26.69 -0.24 -1.51 16 22 C -0.15 -1.36 9.78 -26.70 -0.26 -1.62 16 23 H 0.06 0.52 5.54 -51.93 -0.29 0.23 16 24 H 0.07 0.49 6.07 -51.93 -0.32 0.18 16 25 H 0.07 0.56 7.83 -51.93 -0.41 0.15 16 26 H 0.08 1.28 7.48 -51.93 -0.39 0.89 16 27 H 0.08 0.93 7.86 -51.93 -0.41 0.52 16 28 H 0.04 0.70 6.08 -51.93 -0.32 0.38 16 29 H 0.06 1.25 6.86 -51.93 -0.36 0.89 16 30 H 0.06 1.15 7.65 -51.93 -0.40 0.75 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.28 6.86 -51.93 -0.36 0.92 16 33 H 0.05 0.64 5.44 -51.93 -0.28 0.36 16 34 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.38 10.52 5.36 -40.82 -0.22 10.30 16 37 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.43 8.11 -51.92 -0.42 0.01 16 40 H 0.07 0.54 5.67 -51.93 -0.29 0.25 16 41 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 44 H 0.10 1.10 8.02 -51.93 -0.42 0.68 16 LS Contribution 337.04 15.07 5.08 5.08 Total: -1.00 -33.21 337.04 -7.03 -40.25 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -7.37 Total: 6.13 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: 0.21 Total: -4.70 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -0.01 Total: -55.38 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.08 Total: -9.31 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.21 -7.03 -40.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505813235.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.058 kcal (2) G-P(sol) polarization free energy of solvation -33.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds