Wall clock time and date at job start Mon Mar 30 2020 01:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 120.00164 * 2 1 4 4 C 1.52990 * 109.47714 * 270.00650 * 3 2 1 5 5 C 1.53000 * 109.47095 * 299.99753 * 4 3 2 6 6 C 1.53004 * 109.47326 * 59.99473 * 4 3 2 7 7 C 1.53002 * 109.47377 * 179.97438 * 4 3 2 8 8 N 1.46497 * 109.47089 * 180.02562 * 7 4 3 9 9 C 1.36938 * 119.99893 * 180.02562 * 8 7 4 10 10 H 1.08003 * 120.00008 * 359.97438 * 9 8 7 11 11 C 1.38818 * 119.99983 * 180.02562 * 9 8 7 12 12 N 1.31621 * 120.00001 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99841 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46621 * 59.99945 * 13 11 9 15 15 H 1.48494 * 109.46765 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.46992 * 300.00004 * 13 11 9 17 17 C 1.34778 * 120.00375 * 180.02562 * 2 1 3 18 18 O 1.21277 * 120.00220 * 175.79501 * 17 2 1 19 19 C 1.50703 * 119.99675 * 355.79265 * 17 2 1 20 20 C 1.53003 * 115.54745 * 67.10304 * 19 17 2 21 21 C 1.53001 * 117.50285 * 281.43542 * 19 17 2 22 22 C 1.52992 * 117.50051 * 212.77369 * 19 17 2 23 23 H 1.08996 * 109.47380 * 95.32181 * 1 2 3 24 24 H 1.09004 * 109.47072 * 215.32327 * 1 2 3 25 25 H 1.09000 * 109.47100 * 335.32343 * 1 2 3 26 26 H 1.09000 * 109.47351 * 149.99990 * 3 2 1 27 27 H 1.09006 * 109.46543 * 30.00702 * 3 2 1 28 28 H 1.09004 * 109.47082 * 60.00124 * 5 4 3 29 29 H 1.09003 * 109.47291 * 179.97438 * 5 4 3 30 30 H 1.08995 * 109.47050 * 300.00146 * 5 4 3 31 31 H 1.09006 * 109.46837 * 60.00006 * 6 4 3 32 32 H 1.09002 * 109.47054 * 179.97438 * 6 4 3 33 33 H 1.08995 * 109.47248 * 300.00394 * 6 4 3 34 34 H 1.09006 * 109.46800 * 300.00003 * 7 4 3 35 35 H 1.08995 * 109.47023 * 59.99698 * 7 4 3 36 36 H 0.96996 * 120.00262 * 359.97438 * 8 7 4 37 37 H 0.96995 * 119.99769 * 180.02562 * 12 11 9 38 38 H 1.08996 * 109.47263 * 62.57800 * 20 19 17 39 39 H 1.09010 * 109.47027 * 182.58159 * 20 19 17 40 40 H 1.09005 * 109.47364 * 302.57554 * 20 19 17 41 41 H 1.09003 * 117.49216 * 359.97438 * 21 19 17 42 42 H 1.08994 * 117.50090 * 145.01757 * 21 19 17 43 43 H 1.09009 * 117.49853 * 214.98006 * 22 19 17 44 44 H 1.08996 * 117.49993 * 0.02562 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7106 -1.4424 5 6 3.2793 0.6444 -2.1638 6 6 1.1155 1.8935 -2.1636 7 6 3.2169 3.0359 -1.4423 8 7 3.4605 3.4592 -2.8234 9 6 4.1336 4.6253 -3.0736 10 1 4.4845 5.2330 -2.2526 11 6 4.3639 5.0267 -4.3823 12 7 3.9357 4.2863 -5.3828 13 14 5.2814 6.6177 -4.7235 14 1 6.6392 6.5437 -4.1266 15 1 5.3963 6.8180 -6.1904 16 1 4.5387 7.7556 -4.1246 17 6 2.1389 -1.1672 -0.0005 18 8 3.3493 -1.1685 -0.0775 19 6 1.3885 -2.4706 0.0947 20 6 0.5146 -2.8185 -1.1121 21 6 0.8884 -2.8988 1.4758 22 6 2.0702 -3.6262 0.8298 23 1 -0.3634 -0.0953 -1.0232 24 1 -0.3633 -0.8385 0.5942 25 1 -0.3633 0.9338 0.4290 26 1 3.1499 1.1384 0.5138 27 1 1.6084 2.0283 0.5140 28 1 2.7343 -0.2996 -2.1639 29 1 3.4606 0.9589 -3.1916 30 1 4.2317 0.5140 -1.6500 31 1 0.5264 2.6531 -1.6496 32 1 1.2972 2.2088 -3.1911 33 1 0.5706 0.9496 -2.1637 34 1 2.6274 3.7953 -0.9284 35 1 4.1693 2.9059 -0.9284 36 1 3.1456 2.9133 -3.5607 37 1 4.0970 4.5667 -6.2972 38 1 1.1432 -2.9324 -1.9952 39 1 -0.0151 -3.7517 -0.9202 40 1 -0.2072 -2.0192 -1.2806 41 1 1.1027 -2.2378 2.3157 42 1 -0.0628 -3.4286 1.5247 43 1 1.8958 -4.6345 0.4540 44 1 3.0613 -3.4437 1.2450 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505813235.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:33 Heat of formation + Delta-G solvation = -22.136214 kcal Electronic energy + Delta-G solvation = -21753.439664 eV Core-core repulsion = 18706.183269 eV Total energy + Delta-G solvation = -3047.256394 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.55995 -39.12093 -37.51308 -36.41727 -34.80009 -32.20206 -29.83518 -28.72389 -28.13415 -27.31836 -27.00175 -24.76041 -23.34942 -22.95788 -20.04369 -19.59615 -19.10244 -17.66303 -17.27519 -16.87622 -16.54924 -16.01675 -15.49869 -15.31070 -15.19596 -14.66853 -14.40941 -14.18034 -13.97181 -13.81610 -13.70476 -13.28238 -13.20190 -12.99427 -12.96063 -12.76697 -12.55339 -12.43946 -12.38594 -12.23584 -12.16407 -11.69183 -11.63831 -11.49361 -11.44013 -10.93269 -10.92243 -10.57071 -9.56464 -8.98183 -7.94664 -5.22881 1.45571 1.49494 1.55436 1.60903 2.03771 2.56367 2.77478 3.38178 3.53043 3.74614 3.83176 3.90907 3.93379 3.96192 4.10371 4.26768 4.42914 4.46531 4.53358 4.65945 4.72009 4.73730 4.79841 4.84006 4.85652 4.88993 4.92222 4.94268 4.99583 5.01313 5.13816 5.16474 5.22176 5.23321 5.29497 5.42947 5.47802 5.53606 5.61896 6.27447 6.46347 7.24395 7.33812 8.10836 8.35046 9.28999 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.041023 B = 0.003925 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.381324 B = 7131.773436 C = 7172.865953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.601 5.601 3 C 0.135 3.865 4 C -0.076 4.076 5 C -0.105 4.105 6 C -0.125 4.125 7 C 0.163 3.837 8 N -0.739 5.739 9 C -0.248 4.248 10 H 0.074 0.926 11 C -0.075 4.075 12 N -0.970 5.970 13 Si 0.975 3.025 14 H -0.281 1.281 15 H -0.294 1.294 16 H -0.275 1.275 17 C 0.537 3.463 18 O -0.579 6.579 19 C -0.170 4.170 20 C -0.111 4.111 21 C -0.133 4.133 22 C -0.158 4.158 23 H 0.064 0.936 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.061 0.939 27 H 0.105 0.895 28 H 0.047 0.953 29 H 0.026 0.974 30 H 0.032 0.968 31 H 0.065 0.935 32 H 0.029 0.971 33 H 0.072 0.928 34 H 0.030 0.970 35 H 0.007 0.993 36 H 0.375 0.625 37 H 0.251 0.749 38 H 0.044 0.956 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.134 0.866 43 H 0.120 0.880 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.812 -15.227 15.050 25.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.332 5.332 3 C 0.011 3.989 4 C -0.078 4.078 5 C -0.163 4.163 6 C -0.183 4.183 7 C 0.036 3.964 8 N -0.383 5.383 9 C -0.380 4.380 10 H 0.092 0.908 11 C -0.268 4.268 12 N -0.621 5.621 13 Si 0.804 3.196 14 H -0.207 1.207 15 H -0.221 1.221 16 H -0.201 1.201 17 C 0.327 3.673 18 O -0.459 6.459 19 C -0.173 4.173 20 C -0.168 4.168 21 C -0.170 4.170 22 C -0.195 4.195 23 H 0.083 0.917 24 H 0.111 0.889 25 H 0.108 0.892 26 H 0.080 0.920 27 H 0.123 0.877 28 H 0.066 0.934 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.049 0.951 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.025 0.975 36 H 0.209 0.791 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.110 0.890 40 H 0.097 0.903 41 H 0.112 0.888 42 H 0.152 0.848 43 H 0.138 0.862 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.120 -15.055 15.073 25.020 hybrid contribution 1.057 0.866 -1.019 1.704 sum -12.063 -14.190 14.054 23.332 Atomic orbital electron populations 1.22268 0.77149 1.04996 1.02852 1.47769 1.08370 1.04762 1.72263 1.21400 0.97534 0.85321 0.94606 1.21012 0.96134 0.94123 0.96483 1.21537 0.98811 0.97364 0.98582 1.21785 0.95303 1.01760 0.99410 1.20738 0.95842 0.93541 0.86292 1.42571 1.67910 1.25069 1.02725 1.19640 1.27305 0.98922 0.92086 0.90785 1.25569 1.03267 1.02502 0.95418 1.69822 1.53293 1.40804 0.98212 0.85186 0.78547 0.79615 0.76255 1.20713 1.22055 1.20066 1.20202 0.86880 0.85425 0.74841 1.90703 1.16381 1.87790 1.51000 1.21405 1.04710 0.93185 0.98016 1.21401 0.98090 1.03517 0.93803 1.23214 0.99711 1.01980 0.92100 1.23076 0.97547 0.96480 1.02436 0.91720 0.88887 0.89181 0.92011 0.87678 0.93359 0.95464 0.94844 0.91607 0.95138 0.90973 0.95176 0.97519 0.79114 0.94031 0.93682 0.89007 0.90308 0.88777 0.84779 0.86170 0.90336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.95 7.95 127.77 1.02 1.96 16 2 N -0.60 -13.74 2.40 -846.77 -2.03 -15.77 16 3 C 0.13 3.70 4.62 86.38 0.40 4.10 16 4 C -0.08 -2.63 0.60 -52.18 -0.03 -2.66 16 5 C -0.11 -4.22 6.91 71.98 0.50 -3.72 16 6 C -0.13 -3.93 7.71 71.98 0.55 -3.38 16 7 C 0.16 6.95 5.15 86.38 0.44 7.39 16 8 N -0.74 -39.54 5.00 -343.44 -1.72 -41.26 16 9 C -0.25 -14.45 9.99 84.03 0.84 -13.61 16 10 H 0.07 4.14 7.83 -2.91 -0.02 4.11 16 11 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 12 N -0.97 -61.34 13.06 21.65 0.28 -61.06 16 13 Si 0.98 47.56 29.55 68.60 2.03 49.59 16 14 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 15 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 16 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 17 C 0.54 14.49 5.49 87.66 0.48 14.97 16 18 O -0.58 -21.39 14.20 -3.02 -0.04 -21.44 16 19 C -0.17 -3.13 1.39 -52.93 -0.07 -3.20 16 20 C -0.11 -1.61 9.46 71.98 0.68 -0.93 16 21 C -0.13 -1.62 9.01 30.62 0.28 -1.34 16 22 C -0.16 -2.70 9.78 30.62 0.30 -2.40 16 23 H 0.06 0.87 5.54 -2.39 -0.01 0.85 16 24 H 0.09 0.88 6.07 -2.39 -0.01 0.87 16 25 H 0.09 0.97 7.83 -2.39 -0.02 0.96 16 26 H 0.06 1.96 7.48 -2.39 -0.02 1.94 16 27 H 0.11 2.28 7.86 -2.38 -0.02 2.26 16 28 H 0.05 1.80 6.08 -2.38 -0.01 1.78 16 29 H 0.03 1.22 6.86 -2.39 -0.02 1.20 16 30 H 0.03 1.45 7.65 -2.39 -0.02 1.43 16 31 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 32 H 0.03 1.17 6.86 -2.39 -0.02 1.16 16 33 H 0.07 1.86 5.44 -2.39 -0.01 1.85 16 34 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 36 H 0.38 21.35 5.36 -92.71 -0.50 20.85 16 37 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 38 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.09 0.85 8.11 -2.38 -0.02 0.83 16 40 H 0.08 0.96 5.67 -2.38 -0.01 0.95 16 41 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.12 1.55 8.14 -2.38 -0.02 1.53 16 44 H 0.08 1.72 8.02 -2.39 -0.02 1.70 16 Total: -1.00 -74.96 337.04 4.85 -70.11 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: 0.48 Total: 26.67 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: 5.85 Total: -6.84 kcal Atomic # 7 Polarization: -114.62 SS G_CDS: -3.47 Total: -118.09 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.04 Total: -21.44 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Total: -74.96 4.85 -70.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505813235.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.976 kcal (2) G-P(sol) polarization free energy of solvation -74.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds