Wall clock time and date at job start Mon Mar 30 2020 00:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46493 * 109.47394 * 2 1 4 4 C 1.36739 * 127.13710 * 90.93458 * 3 2 1 5 5 C 1.50692 * 126.34815 * 359.97438 * 4 3 2 6 6 C 1.53001 * 109.47321 * 89.99631 * 5 4 3 7 7 O 1.42907 * 109.47165 * 179.97438 * 6 5 4 8 8 N 1.30303 * 107.30427 * 180.24371 * 4 3 2 9 9 N 1.28531 * 110.04859 * 359.56193 * 8 4 3 10 10 C 1.31209 * 109.86290 * 0.44988 * 9 8 4 11 11 N 1.38588 * 126.47118 * 179.68985 * 10 9 8 12 12 C 1.46896 * 110.99962 * 306.64348 * 11 10 9 13 13 C 1.46905 * 110.99621 * 70.59854 * 11 10 9 14 14 H 1.09000 * 109.46897 * 54.99528 * 13 11 10 15 15 C 1.52998 * 109.46964 * 294.99774 * 13 11 10 16 16 C 1.50701 * 109.46897 * 174.99733 * 13 11 10 17 17 H 1.08001 * 119.99949 * 0.02562 * 16 13 11 18 18 C 1.37871 * 119.99775 * 179.97438 * 16 13 11 19 19 N 1.31512 * 120.00322 * 0.02562 * 18 16 13 20 20 Si 1.86805 * 119.99838 * 179.97438 * 18 16 13 21 21 H 1.48494 * 109.47244 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46617 * 120.00363 * 20 18 16 23 23 H 1.48493 * 109.47428 * 240.00168 * 20 18 16 24 24 H 1.09001 * 109.46750 * 295.55583 * 1 2 3 25 25 H 1.08996 * 109.46748 * 55.55566 * 1 2 3 26 26 H 1.08993 * 109.47047 * 175.55635 * 1 2 3 27 27 H 1.09008 * 109.46817 * 239.99505 * 2 1 3 28 28 H 1.08998 * 109.46958 * 120.00151 * 2 1 3 29 29 H 1.09000 * 109.47115 * 329.99538 * 5 4 3 30 30 H 1.08998 * 109.47271 * 209.99461 * 5 4 3 31 31 H 1.09000 * 109.47102 * 59.99899 * 6 5 4 32 32 H 1.08998 * 109.46808 * 300.00113 * 6 5 4 33 33 H 0.96692 * 114.00009 * 179.97438 * 7 6 5 34 34 H 1.08996 * 109.47486 * 54.87680 * 12 11 10 35 35 H 1.09007 * 109.46628 * 174.87654 * 12 11 10 36 36 H 1.08995 * 109.47255 * 294.86636 * 12 11 10 37 37 H 1.09004 * 109.46840 * 180.02562 * 15 13 11 38 38 H 1.09000 * 109.46983 * 300.00162 * 15 13 11 39 39 H 1.09004 * 109.47243 * 60.00335 * 15 13 11 40 40 H 0.97000 * 120.00462 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3104 2.1535 1.0899 5 6 2.1893 1.7420 2.5345 6 6 3.5079 1.1213 3.0003 7 8 3.3932 0.7316 4.3704 8 7 2.7073 3.3133 0.6480 9 7 2.6947 3.3229 -0.6372 10 6 2.2767 2.1636 -1.0877 11 7 2.1253 1.8023 -2.4170 12 6 1.2886 2.7735 -3.1344 13 6 3.4309 1.6467 -3.0722 14 1 4.0370 0.9363 -2.5101 15 6 4.1429 3.0001 -3.1183 16 6 3.2308 1.1362 -4.4759 17 1 2.2335 0.9468 -4.8446 18 6 4.3208 0.9121 -5.2898 19 7 5.5352 1.1432 -4.8411 20 14 4.0728 0.2786 -7.0296 21 1 2.6217 0.1002 -7.2893 22 1 4.6317 1.2571 -7.9969 23 1 4.7680 -1.0242 -7.1859 24 1 -0.3633 0.4433 0.9271 25 1 -0.3633 0.5812 -0.8475 26 1 -0.3633 -1.0245 -0.0796 27 1 1.8934 -0.5140 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.3872 1.0113 2.6381 30 1 1.9645 2.6172 3.1440 31 1 4.3101 1.8520 2.8967 32 1 3.7328 0.2461 2.3908 33 1 4.1941 0.3290 4.7331 34 1 1.7071 3.7727 -3.0140 35 1 1.2606 2.5165 -4.1934 36 1 0.2773 2.7517 -2.7285 37 1 5.1115 2.8847 -3.6049 38 1 3.5367 3.7106 -3.6803 39 1 4.2876 3.3693 -2.1030 40 1 6.3021 0.9851 -5.4136 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520757142.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:51 Heat of formation + Delta-G solvation = 38.570100 kcal Electronic energy + Delta-G solvation = -21515.128936 eV Core-core repulsion = 18366.964622 eV Total energy + Delta-G solvation = -3148.164314 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.55474 -37.44539 -37.02245 -35.41186 -33.07026 -32.24467 -30.32515 -28.94508 -27.97384 -25.37195 -25.20753 -24.05989 -23.24742 -21.42550 -20.29248 -19.43477 -17.67122 -16.54641 -16.43283 -15.85701 -15.56101 -15.12215 -14.64153 -14.46449 -14.08609 -13.59592 -13.48996 -13.23874 -12.75534 -12.43783 -12.27272 -12.12035 -11.57186 -11.51400 -11.33150 -11.27174 -11.10873 -10.95120 -10.79858 -10.56097 -10.24243 -10.17220 -10.13834 -9.90467 -9.72066 -8.92610 -8.52173 -8.46294 -7.71918 -6.10623 -4.17009 2.12000 2.66173 3.24326 3.26656 3.32797 3.36313 3.96505 4.30890 4.62187 4.68451 4.74041 4.82571 5.03721 5.07918 5.21575 5.23821 5.31069 5.46322 5.61687 5.67749 5.76270 5.83190 5.99412 6.08429 6.21830 6.37244 6.48293 6.60631 6.82449 7.01972 7.05175 7.14205 7.37495 7.50548 7.62098 7.73139 7.89359 8.22861 8.43767 8.86678 9.22594 9.48080 10.96177 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.025043 B = 0.005081 C = 0.004984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.821098 B = 5509.810180 C = 5616.087687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.108 3.892 3 N -0.467 5.467 4 C 0.153 3.847 5 C -0.022 4.022 6 C 0.081 3.919 7 O -0.574 6.574 8 N -0.287 5.287 9 N -0.315 5.315 10 C 0.381 3.619 11 N -0.470 5.470 12 C 0.046 3.954 13 C 0.224 3.776 14 H 0.035 0.965 15 C -0.173 4.173 16 C -0.507 4.507 17 H 0.067 0.933 18 C 0.062 3.938 19 N -0.889 5.889 20 Si 0.900 3.100 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.056 0.944 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.106 0.894 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.057 0.943 32 H 0.046 0.954 33 H 0.383 0.617 34 H 0.040 0.960 35 H 0.091 0.909 36 H 0.043 0.957 37 H 0.086 0.914 38 H 0.032 0.968 39 H 0.033 0.967 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.865 -3.834 12.264 14.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.015 4.015 3 N -0.161 5.161 4 C -0.114 4.114 5 C -0.062 4.062 6 C 0.002 3.998 7 O -0.380 6.380 8 N -0.128 5.128 9 N -0.158 5.158 10 C 0.025 3.975 11 N -0.196 5.196 12 C -0.102 4.102 13 C 0.119 3.881 14 H 0.053 0.947 15 C -0.232 4.232 16 C -0.546 4.546 17 H 0.085 0.915 18 C -0.140 4.140 19 N -0.527 5.527 20 Si 0.728 3.272 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.095 0.905 27 H 0.124 0.876 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.121 0.879 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.230 0.770 34 H 0.059 0.941 35 H 0.109 0.891 36 H 0.062 0.938 37 H 0.104 0.896 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.026 -2.661 12.081 14.227 hybrid contribution 0.531 -1.267 -1.002 1.701 sum -6.495 -3.928 11.079 13.430 Atomic orbital electron populations 1.22087 0.94065 1.03128 1.02812 1.21793 0.95669 0.79270 1.04782 1.46425 1.49754 1.13723 1.06155 1.24173 1.06417 0.89955 0.90848 1.19641 0.97894 1.02438 0.86191 1.22087 0.97226 0.98310 0.82168 1.86398 1.42085 1.83306 1.26200 1.73952 1.17542 1.17117 1.04226 1.74754 1.19866 1.18920 1.02287 1.22924 0.98036 0.86858 0.89692 1.59432 1.20202 1.45780 0.94214 1.22239 0.94267 0.93829 0.99865 1.19406 0.80912 0.94025 0.93708 0.94703 1.22437 1.03700 0.97778 0.99303 1.21042 0.93403 1.43973 0.96176 0.91514 1.24914 0.95018 0.95408 0.98660 1.69917 0.97929 1.48319 1.36550 0.86404 0.78322 0.78424 0.84043 1.19634 1.20987 1.21031 0.92518 0.91309 0.90548 0.87591 0.89609 0.89675 0.87918 0.92505 0.93577 0.76992 0.94098 0.89086 0.93802 0.89556 0.94908 0.94841 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 10.24 37.16 0.38 -1.40 16 2 C 0.11 1.40 6.62 -4.04 -0.03 1.37 16 3 N -0.47 -7.92 2.81 -114.08 -0.32 -8.24 16 4 C 0.15 2.53 7.32 -154.01 -1.13 1.40 16 5 C -0.02 -0.26 5.78 -27.89 -0.16 -0.42 16 6 C 0.08 0.89 7.03 37.16 0.26 1.15 16 7 O -0.57 -5.63 13.66 -35.23 -0.48 -6.11 16 8 N -0.29 -5.81 12.18 32.99 0.40 -5.40 16 9 N -0.31 -7.00 9.73 30.31 0.29 -6.70 16 10 C 0.38 7.89 6.21 -318.87 -1.98 5.91 16 11 N -0.47 -10.13 4.77 -176.08 -0.84 -10.98 16 12 C 0.05 0.91 8.66 60.06 0.52 1.43 16 13 C 0.22 5.61 2.32 -68.86 -0.16 5.45 16 14 H 0.04 0.97 8.11 -51.93 -0.42 0.55 16 15 C -0.17 -4.40 8.20 37.16 0.30 -4.10 16 16 C -0.51 -13.28 7.81 -34.44 -0.27 -13.55 16 17 H 0.07 1.71 6.81 -52.49 -0.36 1.36 16 18 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 19 N -0.89 -24.87 11.32 55.43 0.63 -24.24 16 20 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.11 1.52 8.14 -51.92 -0.42 1.10 16 28 H 0.09 0.88 7.83 -51.93 -0.41 0.47 16 29 H 0.08 0.88 7.89 -51.93 -0.41 0.47 16 30 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.38 2.04 9.12 45.56 0.42 2.46 16 34 H 0.04 0.85 6.53 -51.93 -0.34 0.51 16 35 H 0.09 1.83 6.30 -51.93 -0.33 1.51 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 38 H 0.03 0.81 6.59 -51.93 -0.34 0.46 16 39 H 0.03 0.84 5.95 -51.93 -0.31 0.53 16 40 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 325.45 15.07 4.90 4.90 Total: -1.00 -31.74 325.45 -8.12 -39.86 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -5.33 Total: 2.55 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -2.35 Total: -1.20 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: 0.16 Total: -55.56 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.48 Total: -6.11 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.74 -8.12 -39.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520757142.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.426 kcal (2) G-P(sol) polarization free energy of solvation -31.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds